Wall clock time and date at job start Tue Mar 31 2020 10:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 C 1.52998 * 109.47166 * 120.00033 * 2 1 3 5 5 C 1.53004 * 109.46830 * 65.94333 * 4 2 1 6 6 N 1.46493 * 115.55337 * 78.69275 * 5 4 2 7 7 C 1.34783 * 119.99828 * 40.76493 * 6 5 4 8 8 O 1.21590 * 120.00004 * 5.48993 * 7 6 5 9 9 C 1.47541 * 119.99593 * 185.49504 * 7 6 5 10 10 C 1.39657 * 120.19947 * 359.71893 * 9 7 6 11 11 C 1.37829 * 119.92161 * 179.72428 * 10 9 7 12 12 C 1.38578 * 120.31967 * 0.58182 * 11 10 9 13 13 C 1.38027 * 120.40137 * 359.69231 * 12 11 10 14 14 C 1.38831 * 120.07097 * 0.02562 * 13 12 11 15 15 O 1.35526 * 120.16167 * 179.97438 * 14 13 12 16 16 C 1.34814 * 117.00005 * 5.94664 * 15 14 13 17 17 H 1.08009 * 119.99482 * 5.40143 * 16 15 14 18 18 C 1.38686 * 120.00221 * 185.40708 * 16 15 14 19 19 N 1.31523 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00097 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47087 * 359.97438 * 20 18 16 22 22 H 1.48509 * 109.47150 * 119.99872 * 20 18 16 23 23 H 1.48503 * 109.47193 * 239.99639 * 20 18 16 24 24 C 1.53005 * 117.49589 * 293.02005 * 5 4 2 25 25 C 1.53004 * 60.02941 * 252.50250 * 24 5 4 26 26 H 1.09001 * 109.47090 * 51.73492 * 1 2 3 27 27 H 1.08996 * 109.47045 * 171.73831 * 1 2 3 28 28 H 1.09001 * 109.47028 * 291.73025 * 1 2 3 29 29 H 1.09000 * 109.46929 * 240.00751 * 2 1 3 30 30 H 1.08999 * 109.47030 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47003 * 300.00109 * 3 2 1 32 32 H 1.09000 * 109.46698 * 60.00609 * 3 2 1 33 33 H 1.08991 * 109.47596 * 305.93712 * 4 2 1 34 34 H 1.09002 * 109.47120 * 185.93413 * 4 2 1 35 35 H 0.96999 * 120.00571 * 220.76083 * 6 5 4 36 36 H 1.08001 * 120.04300 * 0.02562 * 10 9 7 37 37 H 1.07993 * 119.84511 * 180.31862 * 11 10 9 38 38 H 1.07996 * 119.80115 * 179.72134 * 12 11 10 39 39 H 1.08002 * 119.96474 * 180.02562 * 13 12 11 40 40 H 0.97003 * 119.99733 * 180.02562 * 19 18 16 41 41 H 1.08994 * 117.49558 * 0.02562 * 24 5 4 42 42 H 1.08995 * 117.49231 * 145.00115 * 24 5 4 43 43 H 1.09008 * 117.49684 * 107.50809 * 25 24 5 44 44 H 1.09001 * 117.49642 * 252.52073 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6556 -2.2004 1.1767 6 7 2.4979 -3.0306 0.3122 7 6 3.8339 -2.8529 0.3015 8 8 4.3500 -2.0747 1.0802 9 6 4.6701 -3.6028 -0.6553 10 6 4.0822 -4.5020 -1.5476 11 6 4.8681 -5.1952 -2.4429 12 6 6.2419 -5.0137 -2.4545 13 6 6.8375 -4.1326 -1.5746 14 6 6.0609 -3.4214 -0.6699 15 8 6.6439 -2.5562 0.1952 16 6 7.9658 -2.3383 0.0453 17 1 8.4938 -2.7750 -0.7896 18 6 8.6477 -1.5535 0.9632 19 7 8.0046 -1.0214 1.9797 20 14 10.4796 -1.2522 0.7560 21 1 10.9629 -1.9573 -0.4582 22 1 10.7288 0.2050 0.6149 23 1 11.2035 -1.7652 1.9468 24 6 0.1679 -2.5485 1.2586 25 6 1.0890 -2.8466 2.4434 26 1 -0.3633 0.6364 -0.8069 27 1 -0.3633 -1.0170 -0.1477 28 1 -0.3633 0.3805 0.9547 29 1 1.8933 -0.5137 -0.8901 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.5926 -0.2726 2.1360 34 1 3.1248 -0.6301 1.3039 35 1 2.0942 -3.7082 -0.2524 36 1 3.0125 -4.6504 -1.5396 37 1 4.4116 -5.8864 -3.1358 38 1 6.8502 -5.5645 -3.1565 39 1 7.9087 -3.9962 -1.5901 40 1 8.4816 -0.4722 2.6214 41 1 -0.5368 -1.7237 1.3637 42 1 -0.1839 -3.3952 0.6692 43 1 0.9900 -2.2179 3.3284 44 1 1.3432 -3.8894 2.6333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857673558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:04 Heat of formation + Delta-G solvation = -11.705789 kcal Electronic energy + Delta-G solvation = -25338.314778 eV Core-core repulsion = 21836.425076 eV Total energy + Delta-G solvation = -3501.889702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.92186 -38.85821 -37.06089 -36.29527 -34.78826 -32.46301 -32.28960 -30.15807 -28.92045 -27.40442 -26.96094 -25.38825 -23.40320 -22.29166 -21.64925 -20.52077 -20.19499 -18.96988 -18.01451 -17.57410 -16.22216 -15.79581 -15.19449 -14.74609 -14.55285 -14.22633 -14.10285 -14.09237 -13.80458 -13.53285 -13.21905 -13.19395 -12.70793 -12.50586 -12.11319 -12.01824 -11.71691 -11.65845 -11.39305 -11.31962 -11.25317 -11.07095 -10.91222 -10.87816 -10.74300 -10.44147 -10.41482 -10.01648 -9.96730 -9.51894 -8.87913 -8.57188 -8.33913 -8.21937 -7.30507 -6.44719 -4.04065 1.71700 2.32090 3.12109 3.12409 3.18362 3.55186 3.67340 3.93455 4.02956 4.65147 4.78966 4.97698 5.03026 5.10574 5.14337 5.18928 5.29440 5.35720 5.46582 5.53237 5.63238 5.71743 5.76337 5.85407 5.93873 5.96418 5.99800 6.00675 6.12339 6.13405 6.16098 6.22203 6.30879 6.49311 6.56305 6.60503 6.69329 6.79884 6.95088 7.06174 7.16760 7.24702 7.28974 7.69778 7.92510 8.17773 8.95434 9.14203 9.67816 10.69160 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.004965 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.303665 B = 5637.760833 C = 6919.947366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.129 3.871 6 N -0.712 5.712 7 C 0.559 3.441 8 O -0.492 6.492 9 C -0.227 4.227 10 C -0.039 4.039 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.237 4.237 14 C 0.189 3.811 15 O -0.123 6.123 16 C -0.402 4.402 17 H 0.093 0.907 18 C 0.045 3.955 19 N -0.832 5.832 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.189 4.189 25 C -0.191 4.191 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.392 0.608 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.271 0.729 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 -2.538 -4.710 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.140 4.140 5 C 0.042 3.958 6 N -0.366 5.366 7 C 0.349 3.651 8 O -0.366 6.366 9 C -0.232 4.232 10 C -0.058 4.058 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.021 6.021 16 C -0.478 4.478 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.463 5.463 20 Si 0.764 3.236 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.227 4.227 25 C -0.230 4.230 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.227 0.773 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.393 -1.611 -3.715 13.038 hybrid contribution 0.660 -0.469 -0.477 0.940 sum -11.733 -2.080 -4.192 12.632 Atomic orbital electron populations 1.22206 0.96148 1.01913 1.00954 1.21000 0.94953 0.95995 0.98837 1.21826 1.01788 0.95874 1.00906 1.21674 1.05890 0.89498 0.96961 1.20501 0.89439 0.91678 0.94231 1.45277 1.06383 1.39303 1.45646 1.18185 0.80803 0.82626 0.83491 1.90832 1.71876 1.35205 1.38646 1.18861 0.91238 1.07988 1.05097 1.20755 0.97975 0.93638 0.93411 1.20456 0.93952 1.06423 1.04162 1.20897 0.94553 0.95411 0.96133 1.21167 1.00771 1.02722 1.01010 1.19285 0.90774 0.87900 0.89087 1.84192 1.23833 1.49099 1.44970 1.21526 0.81853 1.32638 1.11784 0.88916 1.25368 1.00305 0.95872 0.94735 1.70135 1.36264 1.28486 1.11451 0.85679 0.80533 0.78660 0.78733 1.18985 1.20006 1.20038 1.23580 0.93054 1.03562 1.02467 1.23487 1.04022 1.02197 0.93264 0.93467 0.91577 0.93075 0.91406 0.92176 0.93209 0.93049 0.91759 0.86783 0.77278 0.87154 0.87327 0.87220 0.85092 0.91933 0.87187 0.88950 0.88549 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 7.71 37.16 0.29 -1.42 16 2 C -0.09 -1.25 2.91 -90.62 -0.26 -1.52 16 3 C -0.15 -2.02 9.19 37.16 0.34 -1.68 16 4 C -0.10 -1.65 4.52 -26.73 -0.12 -1.77 16 5 C 0.13 1.93 2.17 -131.78 -0.29 1.64 16 6 N -0.71 -11.63 5.51 -48.60 -0.27 -11.90 16 7 C 0.56 12.09 7.54 -12.46 -0.09 12.00 16 8 O -0.49 -12.98 12.56 -16.57 -0.21 -13.19 16 9 C -0.23 -4.89 5.89 -104.81 -0.62 -5.51 16 10 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 11 C -0.23 -3.78 10.03 -39.61 -0.40 -4.18 16 12 C -0.05 -0.91 10.03 -39.53 -0.40 -1.30 16 13 C -0.24 -5.10 9.12 -39.44 -0.36 -5.46 16 14 C 0.19 4.67 6.66 -38.60 -0.26 4.41 16 15 O -0.12 -3.59 7.84 -21.07 -0.17 -3.75 16 16 C -0.40 -11.31 9.44 30.90 0.29 -11.02 16 17 H 0.09 2.38 5.30 -52.48 -0.28 2.10 16 18 C 0.04 1.24 5.49 -17.52 -0.10 1.15 16 19 N -0.83 -24.87 13.67 55.48 0.76 -24.11 16 20 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 24 C -0.19 -2.09 8.13 -26.73 -0.22 -2.31 16 25 C -0.19 -2.54 10.11 -26.69 -0.27 -2.81 16 26 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.07 0.67 5.17 -51.93 -0.27 0.40 16 28 H 0.05 0.52 7.95 -51.93 -0.41 0.11 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 34 H 0.11 2.40 5.25 -51.93 -0.27 2.13 16 35 H 0.39 5.21 6.83 -40.82 -0.28 4.93 16 36 H 0.11 1.46 6.42 -52.49 -0.34 1.13 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.11 1.08 5.73 -51.93 -0.30 0.78 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.10 1.23 8.10 -51.92 -0.42 0.80 16 44 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -32.86 354.71 -8.61 -41.47 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.22 Total: 11.51 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -2.83 Total: -20.81 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.49 Total: -36.01 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.37 Total: -16.94 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.86 -8.61 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857673558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.761 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds