Wall clock time and date at job start Tue Mar 31 2020 10:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 C 1.52998 * 109.47166 * 120.00033 * 2 1 3 5 5 C 1.53004 * 109.46830 * 65.94333 * 4 2 1 6 6 N 1.46493 * 115.55337 * 78.69275 * 5 4 2 7 7 C 1.34783 * 119.99828 * 40.76493 * 6 5 4 8 8 O 1.21590 * 120.00004 * 5.48993 * 7 6 5 9 9 C 1.47541 * 119.99593 * 185.49504 * 7 6 5 10 10 C 1.39657 * 120.19947 * 359.71893 * 9 7 6 11 11 C 1.37829 * 119.92161 * 179.72428 * 10 9 7 12 12 C 1.38578 * 120.31967 * 0.58182 * 11 10 9 13 13 C 1.38027 * 120.40137 * 359.69231 * 12 11 10 14 14 C 1.38831 * 120.07097 * 0.02562 * 13 12 11 15 15 O 1.35526 * 120.16167 * 179.97438 * 14 13 12 16 16 C 1.34814 * 117.00005 * 5.94664 * 15 14 13 17 17 H 1.08009 * 119.99482 * 5.40143 * 16 15 14 18 18 C 1.38686 * 120.00221 * 185.40708 * 16 15 14 19 19 N 1.31523 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00097 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47087 * 359.97438 * 20 18 16 22 22 H 1.48509 * 109.47150 * 119.99872 * 20 18 16 23 23 H 1.48503 * 109.47193 * 239.99639 * 20 18 16 24 24 C 1.53005 * 117.49589 * 293.02005 * 5 4 2 25 25 C 1.53004 * 60.02941 * 252.50250 * 24 5 4 26 26 H 1.09001 * 109.47090 * 51.73492 * 1 2 3 27 27 H 1.08996 * 109.47045 * 171.73831 * 1 2 3 28 28 H 1.09001 * 109.47028 * 291.73025 * 1 2 3 29 29 H 1.09000 * 109.46929 * 240.00751 * 2 1 3 30 30 H 1.08999 * 109.47030 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47003 * 300.00109 * 3 2 1 32 32 H 1.09000 * 109.46698 * 60.00609 * 3 2 1 33 33 H 1.08991 * 109.47596 * 305.93712 * 4 2 1 34 34 H 1.09002 * 109.47120 * 185.93413 * 4 2 1 35 35 H 0.96999 * 120.00571 * 220.76083 * 6 5 4 36 36 H 1.08001 * 120.04300 * 0.02562 * 10 9 7 37 37 H 1.07993 * 119.84511 * 180.31862 * 11 10 9 38 38 H 1.07996 * 119.80115 * 179.72134 * 12 11 10 39 39 H 1.08002 * 119.96474 * 180.02562 * 13 12 11 40 40 H 0.97003 * 119.99733 * 180.02562 * 19 18 16 41 41 H 1.08994 * 117.49558 * 0.02562 * 24 5 4 42 42 H 1.08995 * 117.49231 * 145.00115 * 24 5 4 43 43 H 1.09008 * 117.49684 * 107.50809 * 25 24 5 44 44 H 1.09001 * 117.49642 * 252.52073 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6556 -2.2004 1.1767 6 7 2.4979 -3.0306 0.3122 7 6 3.8339 -2.8529 0.3015 8 8 4.3500 -2.0747 1.0802 9 6 4.6701 -3.6028 -0.6553 10 6 4.0822 -4.5020 -1.5476 11 6 4.8681 -5.1952 -2.4429 12 6 6.2419 -5.0137 -2.4545 13 6 6.8375 -4.1326 -1.5746 14 6 6.0609 -3.4214 -0.6699 15 8 6.6439 -2.5562 0.1952 16 6 7.9658 -2.3383 0.0453 17 1 8.4938 -2.7750 -0.7896 18 6 8.6477 -1.5535 0.9632 19 7 8.0046 -1.0214 1.9797 20 14 10.4796 -1.2522 0.7560 21 1 10.9629 -1.9573 -0.4582 22 1 10.7288 0.2050 0.6149 23 1 11.2035 -1.7652 1.9468 24 6 0.1679 -2.5485 1.2586 25 6 1.0890 -2.8466 2.4434 26 1 -0.3633 0.6364 -0.8069 27 1 -0.3633 -1.0170 -0.1477 28 1 -0.3633 0.3805 0.9547 29 1 1.8933 -0.5137 -0.8901 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.5926 -0.2726 2.1360 34 1 3.1248 -0.6301 1.3039 35 1 2.0942 -3.7082 -0.2524 36 1 3.0125 -4.6504 -1.5396 37 1 4.4116 -5.8864 -3.1358 38 1 6.8502 -5.5645 -3.1565 39 1 7.9087 -3.9962 -1.5901 40 1 8.4816 -0.4722 2.6214 41 1 -0.5368 -1.7237 1.3637 42 1 -0.1839 -3.3952 0.6692 43 1 0.9900 -2.2179 3.3284 44 1 1.3432 -3.8894 2.6333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857673558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:03 Heat of formation + Delta-G solvation = -32.813518 kcal Electronic energy + Delta-G solvation = -25339.230078 eV Core-core repulsion = 21836.425076 eV Total energy + Delta-G solvation = -3502.805002 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44635 -40.38267 -38.61340 -37.96182 -35.94572 -34.34482 -33.89026 -31.66774 -30.56529 -28.51131 -28.06203 -27.37555 -24.96200 -23.35378 -23.22039 -21.91355 -21.43789 -20.39465 -19.78673 -19.24247 -17.90306 -17.09528 -16.51109 -16.34461 -16.14153 -15.82948 -15.72484 -15.40034 -15.31220 -14.97604 -14.68966 -14.50896 -14.23860 -14.06214 -13.54731 -13.21492 -13.11421 -12.99598 -12.86373 -12.63931 -12.55003 -12.47780 -12.32922 -12.21393 -12.10719 -11.92430 -11.62288 -11.40508 -11.22975 -11.07139 -10.84212 -10.18042 -9.88559 -9.57997 -9.02603 -8.45014 -6.15318 0.13525 0.72717 1.31306 1.41816 1.50959 2.09403 2.14952 2.23414 2.83633 2.94926 3.25548 3.46019 3.65406 3.86610 3.96227 4.01223 4.07460 4.11663 4.25574 4.29553 4.34198 4.53313 4.58588 4.70347 4.75856 4.78590 4.81207 4.85973 4.97663 5.01223 5.03917 5.06926 5.08885 5.14006 5.22857 5.23578 5.35993 5.46106 5.49299 5.56531 5.61910 5.69449 5.81835 5.96104 6.17105 6.78661 6.94700 7.58037 7.80882 8.75642 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.004965 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.303665 B = 5637.760833 C = 6919.947366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.100 4.100 5 C 0.089 3.911 6 N -0.688 5.688 7 C 0.551 3.449 8 O -0.552 6.552 9 C -0.244 4.244 10 C -0.031 4.031 11 C -0.201 4.201 12 C -0.042 4.042 13 C -0.258 4.258 14 C 0.148 3.852 15 O -0.187 6.187 16 C -0.425 4.425 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.904 5.904 20 Si 1.020 2.980 21 H -0.246 1.246 22 H -0.270 1.270 23 H -0.268 1.268 24 C -0.140 4.140 25 C -0.201 4.201 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.020 0.980 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.410 0.590 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.121 0.879 40 H 0.270 0.730 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.062 -5.242 -7.797 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.204 4.204 4 C -0.138 4.138 5 C 0.002 3.998 6 N -0.342 5.342 7 C 0.341 3.659 8 O -0.430 6.430 9 C -0.249 4.249 10 C -0.050 4.050 11 C -0.219 4.219 12 C -0.060 4.060 13 C -0.277 4.277 14 C 0.093 3.907 15 O -0.089 6.089 16 C -0.501 4.501 17 H 0.122 0.878 18 C -0.221 4.221 19 N -0.540 5.540 20 Si 0.839 3.161 21 H -0.169 1.169 22 H -0.195 1.195 23 H -0.193 1.193 24 C -0.177 4.177 25 C -0.240 4.240 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.248 0.752 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.150 0.850 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.743 -4.390 -6.875 17.730 hybrid contribution 1.359 0.114 0.250 1.386 sum -14.384 -4.276 -6.626 16.403 Atomic orbital electron populations 1.22134 0.92663 1.03275 1.02222 1.20961 0.97679 0.95054 0.96715 1.21833 0.99356 0.96735 1.02443 1.21508 1.02187 0.91588 0.98533 1.20676 0.92320 0.90683 0.96090 1.44973 1.04643 1.39176 1.45361 1.18452 0.82526 0.81935 0.83024 1.90846 1.73451 1.37680 1.41062 1.19363 0.90457 1.08937 1.06141 1.21300 1.00582 0.91506 0.91593 1.21168 0.93181 1.04709 1.02846 1.21424 0.95995 0.93591 0.94987 1.21300 1.00470 1.04047 1.01924 1.20098 0.92639 0.88479 0.89487 1.84193 1.24247 1.52629 1.47870 1.22025 0.82340 1.33244 1.12488 0.87842 1.26718 1.05885 0.95354 0.94111 1.70328 1.38678 1.31395 1.13600 0.84526 0.73420 0.78716 0.79428 1.16915 1.19467 1.19295 1.23731 0.90051 1.04517 0.99408 1.23557 1.04983 1.01872 0.93563 0.92132 0.90105 0.91881 0.93456 0.96039 0.91214 0.91872 0.90867 0.92778 0.75160 0.82343 0.81885 0.82963 0.86078 0.92105 0.85041 0.86066 0.88475 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.71 71.98 0.56 -2.18 16 2 C -0.09 -2.41 2.91 -10.79 -0.03 -2.44 16 3 C -0.15 -4.23 9.19 71.98 0.66 -3.57 16 4 C -0.10 -3.39 4.52 30.59 0.14 -3.25 16 5 C 0.09 2.60 2.17 3.63 0.01 2.61 16 6 N -0.69 -22.05 5.51 -425.92 -2.35 -24.40 16 7 C 0.55 25.07 7.54 86.70 0.65 25.73 16 8 O -0.55 -32.25 12.56 16.90 0.21 -32.04 16 9 C -0.24 -10.71 5.89 -19.99 -0.12 -10.83 16 10 C -0.03 -0.96 9.53 22.52 0.21 -0.74 16 11 C -0.20 -5.43 10.03 22.25 0.22 -5.21 16 12 C -0.04 -1.33 10.03 22.30 0.22 -1.10 16 13 C -0.26 -11.23 9.12 22.36 0.20 -11.02 16 14 C 0.15 7.73 6.66 22.91 0.15 7.88 16 15 O -0.19 -12.00 7.84 0.77 0.01 -11.99 16 16 C -0.43 -26.00 9.44 67.93 0.64 -25.35 16 17 H 0.10 5.72 5.30 -2.91 -0.02 5.70 16 18 C -0.02 -1.29 5.49 84.85 0.47 -0.82 16 19 N -0.90 -59.59 13.67 21.62 0.30 -59.30 16 20 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 21 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 C -0.14 -2.52 8.13 30.60 0.25 -2.27 16 25 C -0.20 -5.07 10.11 30.62 0.31 -4.76 16 26 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 27 H 0.08 1.26 5.17 -2.39 -0.01 1.25 16 28 H 0.06 1.06 7.95 -2.39 -0.02 1.04 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.24 7.94 -2.39 -0.02 2.22 16 34 H 0.05 2.55 5.25 -2.39 -0.01 2.54 16 35 H 0.41 9.58 6.83 -92.71 -0.63 8.95 16 36 H 0.16 3.25 6.42 -2.91 -0.02 3.23 16 37 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.12 5.37 5.72 -2.91 -0.02 5.36 16 40 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 41 H 0.13 1.88 5.73 -2.39 -0.01 1.87 16 42 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 2.41 8.10 -2.38 -0.02 2.39 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -86.93 354.71 5.13 -81.80 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.39 Total: 36.40 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 4.55 Total: -37.32 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.05 Total: -83.70 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: 0.22 Total: -44.03 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -86.93 5.13 -81.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857673558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.986 kcal (2) G-P(sol) polarization free energy of solvation -86.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds