Wall clock time and date at job start Tue Mar 31 2020 10:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00391 * 2 1 4 4 C 1.50704 * 119.99352 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47063 * 94.99931 * 4 2 1 6 6 H 1.09000 * 109.47154 * 54.99835 * 5 4 2 7 7 C 1.53005 * 109.47258 * 174.99632 * 5 4 2 8 8 O 1.42904 * 109.46853 * 54.99928 * 7 5 4 9 9 N 1.46503 * 109.47291 * 294.99524 * 5 4 2 10 10 C 1.34768 * 119.99956 * 155.00049 * 9 5 4 11 11 O 1.21283 * 120.00153 * 0.02562 * 10 9 5 12 12 C 1.50707 * 119.99792 * 180.02562 * 10 9 5 13 13 C 1.50701 * 109.46977 * 180.02562 * 12 10 9 14 14 C 1.37637 * 120.12547 * 264.99579 * 13 12 10 15 15 C 1.38619 * 120.24913 * 180.29699 * 14 13 12 16 16 C 1.38654 * 120.49499 * 359.44683 * 15 14 13 17 17 C 1.37593 * 120.25566 * 0.55737 * 16 15 14 18 18 C 1.40694 * 120.12727 * 85.02080 * 13 12 10 19 19 C 1.41388 * 120.24927 * 359.95455 * 18 13 12 20 20 H 1.08003 * 119.99773 * 334.07854 * 19 18 13 21 21 C 1.39940 * 120.00392 * 154.08554 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.62181 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.63284 * 21 19 18 24 24 H 1.48496 * 109.47262 * 59.99447 * 23 21 19 25 25 H 1.48504 * 109.47090 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46694 * 299.99081 * 23 21 19 27 27 H 1.08002 * 119.99717 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00608 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46705 * 240.00304 * 3 2 1 30 30 H 1.08994 * 109.47349 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47466 * 120.00217 * 3 2 1 32 32 H 1.09002 * 109.47331 * 334.99401 * 4 2 1 33 33 H 1.09002 * 109.46777 * 214.99500 * 4 2 1 34 34 H 1.08991 * 109.47405 * 174.99862 * 7 5 4 35 35 H 1.09004 * 109.46885 * 295.00270 * 7 5 4 36 36 H 0.96697 * 113.99725 * 180.02562 * 8 7 5 37 37 H 0.97001 * 119.99456 * 335.00674 * 9 5 4 38 38 H 1.08998 * 109.47152 * 59.99513 * 12 10 9 39 39 H 1.09000 * 109.46625 * 299.99942 * 12 10 9 40 40 H 1.08002 * 119.87664 * 0.02839 * 14 13 12 41 41 H 1.08000 * 119.74896 * 179.70344 * 15 14 13 42 42 H 1.08006 * 119.86868 * 180.29864 * 16 15 14 43 43 H 1.07991 * 120.13397 * 179.74834 * 17 16 15 44 44 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4272 -1.6834 -1.4378 6 1 2.9769 -0.8641 -1.9010 7 6 3.2982 -2.9413 -1.4292 8 8 2.6243 -3.9824 -0.7192 9 7 1.2028 -1.9424 -2.1995 10 6 1.1994 -1.7974 -3.5393 11 8 2.2101 -1.4529 -4.1146 12 6 -0.0602 -2.0632 -4.3228 13 6 0.2016 -1.8312 -5.7886 14 6 -0.0934 -0.6137 -6.3588 15 6 0.1406 -0.3995 -7.7082 16 6 0.6840 -1.4027 -8.4960 17 6 0.9866 -2.6277 -7.9474 18 6 0.7479 -2.8584 -6.5797 19 6 1.0553 -4.1131 -6.0049 20 1 1.2779 -4.1840 -4.9504 21 6 1.0714 -5.2630 -6.8022 22 7 0.5034 -5.2499 -7.9806 23 14 1.9035 -6.8169 -6.1838 24 1 1.2505 -7.2613 -4.9263 25 1 1.7819 -7.8849 -7.2084 26 1 3.3394 -6.5399 -5.9249 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 2.6902 1.3626 -0.8901 30 1 1.3554 2.1335 -0.0005 31 1 2.6903 1.3627 0.8900 32 1 1.4384 -2.0857 0.4335 33 1 2.9741 -1.1992 0.5889 34 1 3.4836 -3.2618 -2.4543 35 1 4.2472 -2.7229 -0.9395 36 1 3.1196 -4.8116 -0.6734 37 1 0.3947 -2.2182 -1.7393 38 1 -0.8481 -1.3910 -3.9831 39 1 -0.3725 -3.0961 -4.1689 40 1 -0.5128 0.1764 -5.7535 41 1 -0.0983 0.5575 -8.1482 42 1 0.8667 -1.2232 -9.5453 43 1 1.4060 -3.4090 -8.5637 44 1 0.5148 -6.0468 -8.5335 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882898789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:03 Heat of formation + Delta-G solvation = -87.137936 kcal Electronic energy + Delta-G solvation = -25092.494129 eV Core-core repulsion = 21587.333444 eV Total energy + Delta-G solvation = -3505.160686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96338 -39.39620 -38.29604 -36.91025 -35.49212 -34.83038 -33.45870 -31.42401 -31.17786 -28.34502 -28.19229 -27.03323 -26.81120 -23.05267 -22.78766 -21.58433 -20.99479 -19.49100 -19.03853 -18.40376 -17.65000 -17.30448 -17.05620 -16.32835 -16.23662 -15.67158 -15.55012 -15.31667 -15.11991 -14.80586 -14.62029 -14.39847 -14.36191 -13.75838 -13.53291 -13.36716 -13.16514 -12.91451 -12.81848 -12.74700 -12.64106 -12.48695 -12.45945 -12.13187 -12.11026 -11.74342 -11.31641 -11.20308 -11.02472 -11.02076 -10.65431 -9.96092 -9.83697 -9.21781 -9.14929 -8.58727 -6.28268 1.00915 1.14531 1.34572 1.38803 1.45301 1.53962 1.88992 2.19880 2.40935 2.79514 3.40241 3.75431 3.80784 4.01307 4.06777 4.19247 4.31726 4.41468 4.42380 4.46573 4.56731 4.62125 4.71289 4.74580 4.77072 4.81736 4.84864 4.89439 5.07013 5.08791 5.14028 5.20588 5.20846 5.37653 5.55755 5.64332 5.78431 5.80912 6.03564 6.04985 6.17753 6.22232 6.43372 6.70493 6.77413 6.83991 7.00435 7.12345 7.50005 8.37730 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.005082 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.801056 B = 5508.503515 C = 7125.874367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C -0.120 4.120 4 C -0.074 4.074 5 C 0.153 3.847 6 H 0.080 0.920 7 C 0.067 3.933 8 O -0.575 6.575 9 N -0.710 5.710 10 C 0.520 3.480 11 O -0.575 6.575 12 C -0.070 4.070 13 C -0.186 4.186 14 C -0.092 4.092 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.097 3.903 19 C -0.481 4.481 20 H 0.069 0.931 21 C 0.036 3.964 22 N -0.827 5.827 23 Si 0.971 3.029 24 H -0.254 1.254 25 H -0.267 1.267 26 H -0.270 1.270 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.020 0.980 35 H 0.076 0.924 36 H 0.393 0.607 37 H 0.408 0.592 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 4.159 17.266 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.137 4.137 3 C -0.176 4.176 4 C -0.112 4.112 5 C 0.048 3.952 6 H 0.098 0.902 7 C -0.012 4.012 8 O -0.383 6.383 9 N -0.362 5.362 10 C 0.308 3.692 11 O -0.454 6.454 12 C -0.110 4.110 13 C -0.188 4.188 14 C -0.110 4.110 15 C -0.261 4.261 16 C -0.136 4.136 17 C -0.213 4.213 18 C 0.094 3.906 19 C -0.511 4.511 20 H 0.087 0.913 21 C -0.178 4.178 22 N -0.453 5.453 23 Si 0.793 3.207 24 H -0.178 1.178 25 H -0.191 1.191 26 H -0.195 1.195 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.242 0.758 37 H 0.244 0.756 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.803 4.718 16.727 17.473 hybrid contribution 0.508 -1.314 -0.388 1.461 sum 2.311 3.404 16.339 16.849 Atomic orbital electron populations 1.23853 0.95209 1.02343 1.01724 1.21829 0.95824 0.95844 1.00197 1.20886 1.00391 0.94175 1.02190 1.20750 1.01904 0.94778 0.93755 1.20990 0.86176 0.95416 0.92657 0.90241 1.22552 0.95392 0.88559 0.94733 1.86379 1.49617 1.25017 1.77254 1.45868 1.14383 1.70103 1.05871 1.21006 0.90402 0.75359 0.82391 1.90644 1.36256 1.48025 1.70477 1.20261 0.95162 1.03755 0.91791 1.19538 1.08583 0.95887 0.94756 1.20723 0.99664 0.95651 0.94980 1.20704 1.11413 0.99330 0.94669 1.20941 1.00020 0.94052 0.98571 1.21293 1.06755 0.96432 0.96826 1.17719 0.88098 0.92794 0.91946 1.19563 1.43312 0.92023 0.96225 0.91287 1.26665 0.93134 1.03582 0.94447 1.69877 1.33084 1.31452 1.10889 0.85419 0.79244 0.76638 0.79442 1.17815 1.19112 1.19478 0.88051 0.88042 0.92661 0.91688 0.90282 0.89715 0.88561 0.96195 0.90552 0.75777 0.75594 0.87400 0.88979 0.86739 0.86716 0.87688 0.88553 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 13.49 67.78 0.91 -2.63 16 2 C -0.14 -2.60 5.08 -16.49 -0.08 -2.68 16 3 C -0.12 -2.06 10.12 71.23 0.72 -1.34 16 4 C -0.07 -1.41 4.64 29.85 0.14 -1.27 16 5 C 0.15 3.93 2.36 44.99 0.11 4.04 16 6 H 0.08 2.35 7.58 -2.39 -0.02 2.33 16 7 C 0.07 1.67 6.85 71.98 0.49 2.17 16 8 O -0.58 -12.89 12.83 -148.98 -1.91 -14.80 16 9 N -0.71 -20.80 4.57 -442.52 -2.02 -22.83 16 10 C 0.52 20.46 7.43 87.66 0.65 21.11 16 11 O -0.58 -28.03 15.70 -3.04 -0.05 -28.07 16 12 C -0.07 -2.79 5.18 29.10 0.15 -2.64 16 13 C -0.19 -9.18 4.43 -19.41 -0.09 -9.26 16 14 C -0.09 -4.26 9.66 22.22 0.21 -4.04 16 15 C -0.24 -11.26 10.05 22.46 0.23 -11.04 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.19 -10.91 8.68 22.73 0.20 -10.72 16 18 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 19 C -0.48 -26.49 8.14 23.46 0.19 -26.30 16 20 H 0.07 3.72 6.68 -2.91 -0.02 3.70 16 21 C 0.04 1.87 5.16 85.26 0.44 2.31 16 22 N -0.83 -44.49 10.97 21.82 0.24 -44.25 16 23 Si 0.97 39.55 29.59 68.60 2.03 41.58 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H 0.10 1.70 7.83 -2.91 -0.02 1.68 16 28 H 0.10 1.71 7.83 -2.91 -0.02 1.69 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.04 7.78 -2.39 -0.02 1.02 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.60 7.57 -2.39 -0.02 1.58 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.39 5.85 9.12 -74.06 -0.68 5.17 16 37 H 0.41 10.03 8.22 -92.71 -0.76 9.27 16 38 H 0.11 3.48 8.05 -2.39 -0.02 3.46 16 39 H 0.09 3.71 7.06 -2.39 -0.02 3.69 16 40 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 43 H 0.10 5.67 6.22 -2.92 -0.02 5.65 16 44 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -70.43 368.96 2.24 -68.19 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -0.43 Total: 42.86 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 4.38 Total: -42.68 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -1.78 Total: -67.08 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.96 Total: -42.87 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -70.43 2.24 -68.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882898789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.946 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds