Wall clock time and date at job start Tue Mar 31 2020 07:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.29147 * 2 1 4 4 C 1.54370 * 110.32450 * 122.12826 * 2 1 3 5 5 C 1.54472 * 103.04634 * 136.71279 * 4 2 1 6 6 C 1.53000 * 110.40314 * 119.27637 * 5 4 2 7 7 N 1.46901 * 110.40545 * 241.58576 * 5 4 2 8 8 C 1.46898 * 110.99938 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46845 * 179.97438 * 8 7 5 10 10 C 1.38642 * 119.74869 * 90.00120 * 9 8 7 11 11 C 1.37614 * 120.24522 * 179.97438 * 10 9 8 12 12 C 1.40711 * 119.74615 * 359.97438 * 11 10 9 13 13 C 1.41401 * 120.24291 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99707 * 335.39771 * 13 12 11 15 15 C 1.39942 * 120.00035 * 155.40458 * 13 12 11 16 16 N 1.30821 * 119.99873 * 342.72591 * 15 13 12 17 17 Si 1.86797 * 119.99901 * 162.72812 * 15 13 12 18 18 H 1.48497 * 109.47622 * 87.71691 * 17 15 13 19 19 H 1.48499 * 109.47361 * 327.71597 * 17 15 13 20 20 H 1.48509 * 109.47038 * 207.71635 * 17 15 13 21 21 C 1.40710 * 119.51502 * 0.28206 * 12 11 10 22 22 C 1.37624 * 119.74216 * 359.41830 * 21 12 11 23 23 C 1.51502 * 104.62860 * 0.37469 * 5 4 2 24 24 O 1.20830 * 125.94740 * 159.59622 * 23 5 4 25 25 O 1.34570 * 108.11361 * 339.61630 * 23 5 4 26 26 H 1.09006 * 109.46772 * 297.87833 * 1 2 3 27 27 H 1.09003 * 109.47521 * 57.87085 * 1 2 3 28 28 H 1.08994 * 109.47710 * 177.87683 * 1 2 3 29 29 H 1.08999 * 109.47591 * 182.12418 * 3 2 1 30 30 H 1.08999 * 109.47182 * 302.12930 * 3 2 1 31 31 H 1.09000 * 109.46969 * 62.12424 * 3 2 1 32 32 H 1.09002 * 110.69792 * 18.32180 * 4 2 1 33 33 H 1.09003 * 110.84635 * 255.17541 * 4 2 1 34 34 H 1.08998 * 109.46972 * 181.62966 * 6 5 4 35 35 H 1.08996 * 109.47370 * 301.63361 * 6 5 4 36 36 H 1.09008 * 109.46833 * 61.63518 * 6 5 4 37 37 H 1.00901 * 110.99943 * 303.96127 * 7 5 4 38 38 H 1.08992 * 109.47144 * 59.99800 * 8 7 5 39 39 H 1.09002 * 109.47082 * 300.00123 * 8 7 5 40 40 H 1.08000 * 119.87421 * 0.02562 * 10 9 8 41 41 H 1.08002 * 120.12578 * 180.02562 * 11 10 9 42 42 H 0.97003 * 119.99973 * 180.02562 * 16 15 13 43 43 H 1.07995 * 120.13004 * 179.70079 * 21 12 11 44 44 H 1.07997 * 119.87414 * 180.32008 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 6 2.0662 -0.7699 1.2259 5 6 3.2145 -1.6152 0.6319 6 6 4.5445 -1.2477 1.2929 7 7 2.9374 -3.0477 0.8028 8 6 4.0224 -3.8643 0.2425 9 6 3.7037 -5.3244 0.4366 10 6 2.9951 -6.0094 -0.5385 11 6 2.6990 -7.3429 -0.3720 12 6 3.1188 -8.0112 0.7930 13 6 2.8207 -9.3814 0.9746 14 1 1.9746 -9.8217 0.4680 15 6 3.6220 -10.1669 1.8108 16 7 4.8145 -9.7516 2.1529 17 14 2.9890 -11.8085 2.4384 18 1 3.3169 -12.8736 1.4570 19 1 1.5165 -11.7359 2.6164 20 1 3.6303 -12.1211 3.7409 21 6 3.8326 -7.3045 1.7784 22 6 4.1230 -5.9728 1.5880 23 6 3.2350 -1.2529 -0.8391 24 8 4.1654 -1.4065 -1.5945 25 8 2.0367 -0.7299 -1.1578 26 1 -0.3633 0.4806 0.9085 27 1 -0.3634 0.5465 -0.8703 28 1 -0.3634 -1.0269 -0.0381 29 1 3.1498 1.4198 -0.0381 30 1 1.6740 1.9654 -0.8703 31 1 1.7359 1.9425 0.9084 32 1 1.2923 -1.4122 1.6461 33 1 2.4453 -0.0812 1.9810 34 1 5.3474 -1.8315 0.8429 35 1 4.7416 -0.1857 1.1468 36 1 4.4919 -1.4641 2.3599 37 1 2.7805 -3.2723 1.7739 38 1 4.9564 -3.6259 0.7512 39 1 4.1240 -3.6525 -0.8219 40 1 2.6750 -5.4946 -1.4323 41 1 2.1472 -7.8748 -1.1330 42 1 5.3701 -10.2963 2.7322 43 1 4.1554 -7.8064 2.6785 44 1 4.6752 -5.4297 2.3405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930871443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:21 Heat of formation + Delta-G solvation = -68.754409 kcal Electronic energy + Delta-G solvation = -24768.173911 eV Core-core repulsion = 21263.810395 eV Total energy + Delta-G solvation = -3504.363516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 6.41 seconds Orbital eigenvalues (eV) -41.47745 -37.94985 -37.68149 -36.30174 -33.98425 -33.53773 -31.50747 -29.38393 -29.08145 -27.85386 -27.34889 -26.03153 -24.01443 -23.16363 -21.47428 -20.95887 -19.94489 -19.30595 -17.28283 -16.86027 -16.78833 -16.03289 -15.43805 -15.16330 -14.85272 -14.44814 -14.03073 -13.94926 -13.76021 -13.65462 -13.32779 -13.02101 -12.85657 -12.69332 -12.45702 -12.28813 -12.10597 -11.96635 -11.92560 -11.76588 -11.61942 -11.40432 -11.13119 -11.00342 -10.89633 -10.67622 -10.55864 -10.34581 -9.98903 -9.56092 -9.38749 -9.12426 -8.29560 -7.44265 -7.28869 -6.76050 -4.34674 1.92091 2.73720 3.06287 3.08873 3.10432 3.14195 3.20999 3.85620 3.92983 4.06579 4.20946 4.38056 4.55232 4.65829 4.72840 4.86305 5.15345 5.30128 5.32867 5.37557 5.42005 5.47963 5.48786 5.62834 5.72661 5.74652 5.78213 5.88005 5.90865 6.03086 6.32094 6.40695 6.44457 6.69235 6.95437 7.07771 7.13639 7.26837 7.38826 7.47854 7.52988 7.63364 7.89498 8.06304 8.14764 8.31543 8.64606 8.90356 8.98640 10.18477 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029701 B = 0.002916 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.489501 B = 9598.699302 C = 9753.799933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.107 3.893 3 C -0.166 4.166 4 C -0.139 4.139 5 C 0.051 3.949 6 C -0.174 4.174 7 N -0.655 5.655 8 C 0.114 3.886 9 C -0.214 4.214 10 C -0.067 4.067 11 C -0.227 4.227 12 C 0.114 3.886 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.261 1.261 20 H -0.276 1.276 21 C -0.166 4.166 22 C -0.094 4.094 23 C 0.505 3.495 24 O -0.446 6.446 25 O -0.339 6.339 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.352 0.648 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.280 0.720 43 H 0.117 0.883 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 18.614 2.706 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.070 3.930 3 C -0.223 4.223 4 C -0.177 4.177 5 C -0.042 4.042 6 C -0.233 4.233 7 N -0.290 5.290 8 C -0.013 4.013 9 C -0.216 4.216 10 C -0.086 4.086 11 C -0.247 4.247 12 C 0.111 3.889 13 C -0.492 4.492 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.185 1.185 20 H -0.201 1.201 21 C -0.185 4.185 22 C -0.113 4.113 23 C 0.343 3.657 24 O -0.326 6.326 25 O -0.257 6.257 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.172 0.828 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.752 18.423 1.695 19.101 hybrid contribution 0.633 -0.745 1.020 1.413 sum -4.119 17.678 2.715 18.353 Atomic orbital electron populations 1.21872 0.90896 1.04134 1.03032 1.22897 0.96143 0.91107 0.82804 1.22311 1.01780 0.94558 1.03699 1.23169 0.98398 0.98861 0.97280 1.22286 0.95694 0.92789 0.93474 1.22427 0.97279 1.02233 1.01342 1.60889 1.45022 0.98771 1.24279 1.20756 0.90303 0.91008 0.99217 1.18821 1.11010 0.92954 0.98792 1.20354 0.97241 0.94140 0.96837 1.20978 1.10230 0.94777 0.98708 1.17624 0.88926 0.92857 0.89487 1.19596 1.11545 0.94086 1.23958 0.90487 1.25912 0.93785 1.00141 0.94338 1.69828 1.06821 1.37894 1.27371 0.86343 0.80407 0.81428 0.78688 1.19466 1.18472 1.20148 1.21264 1.04543 0.92512 1.00220 1.20503 0.99782 0.95191 0.95785 1.22935 0.80220 0.73255 0.89258 1.90679 1.33136 1.50353 1.58412 1.87326 1.32845 1.65131 1.40412 0.90215 0.91357 0.90624 0.92055 0.90967 0.90062 0.87857 0.88871 0.90651 0.92035 0.91108 0.82777 0.95153 0.91360 0.89551 0.89074 0.90914 0.86538 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.82 37.16 0.33 -0.75 16 2 C 0.11 1.02 1.25 -89.90 -0.11 0.91 16 3 C -0.17 -1.20 8.70 37.16 0.32 -0.88 16 4 C -0.14 -1.27 5.70 -25.24 -0.14 -1.41 16 5 C 0.05 0.65 0.93 -131.59 -0.12 0.53 16 6 C -0.17 -1.95 7.99 37.16 0.30 -1.66 16 7 N -0.65 -10.07 6.03 -101.21 -0.61 -10.68 16 8 C 0.11 2.10 5.12 -4.98 -0.03 2.08 16 9 C -0.21 -4.70 5.41 -104.33 -0.56 -5.26 16 10 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 11 C -0.23 -5.72 9.80 -38.88 -0.38 -6.10 16 12 C 0.11 3.05 5.57 -106.83 -0.60 2.46 16 13 C -0.46 -12.35 9.06 -37.74 -0.34 -12.69 16 14 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 15 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 16 N -0.79 -20.56 10.95 55.55 0.61 -19.95 16 17 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.17 -4.29 8.69 -38.87 -0.34 -4.62 16 22 C -0.09 -2.15 9.67 -39.66 -0.38 -2.53 16 23 C 0.51 7.91 6.48 36.40 0.24 8.14 16 24 O -0.45 -8.30 16.78 -18.32 -0.31 -8.61 16 25 O -0.34 -4.87 10.60 -39.76 -0.42 -5.29 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.49 7.95 -51.93 -0.41 0.08 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.92 7.65 -51.93 -0.40 0.52 16 33 H 0.09 0.61 7.41 -51.93 -0.39 0.23 16 34 H 0.07 0.99 6.42 -51.93 -0.33 0.66 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.35 5.02 8.75 -39.29 -0.34 4.68 16 38 H 0.03 0.53 6.26 -51.93 -0.32 0.21 16 39 H 0.07 1.37 6.52 -51.93 -0.34 1.03 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.12 3.10 6.17 -52.49 -0.32 2.78 16 44 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -30.01 357.76 -9.30 -39.31 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.64 Total: 8.13 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.30 Total: -21.93 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.00 Total: -30.64 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.73 Total: -13.90 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.01 -9.30 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930871443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.446 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.41 seconds