Wall clock time and date at job start Tue Mar 31 2020 07:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.29147 * 2 1 4 4 C 1.54370 * 110.32450 * 122.12826 * 2 1 3 5 5 C 1.54472 * 103.04634 * 136.71279 * 4 2 1 6 6 C 1.53000 * 110.40314 * 119.27637 * 5 4 2 7 7 N 1.46901 * 110.40545 * 241.58576 * 5 4 2 8 8 C 1.46898 * 110.99938 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46845 * 179.97438 * 8 7 5 10 10 C 1.38642 * 119.74869 * 90.00120 * 9 8 7 11 11 C 1.37614 * 120.24522 * 179.97438 * 10 9 8 12 12 C 1.40711 * 119.74615 * 359.97438 * 11 10 9 13 13 C 1.41401 * 120.24291 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99707 * 335.39771 * 13 12 11 15 15 C 1.39942 * 120.00035 * 155.40458 * 13 12 11 16 16 N 1.30821 * 119.99873 * 342.72591 * 15 13 12 17 17 Si 1.86797 * 119.99901 * 162.72812 * 15 13 12 18 18 H 1.48497 * 109.47622 * 87.71691 * 17 15 13 19 19 H 1.48499 * 109.47361 * 327.71597 * 17 15 13 20 20 H 1.48509 * 109.47038 * 207.71635 * 17 15 13 21 21 C 1.40710 * 119.51502 * 0.28206 * 12 11 10 22 22 C 1.37624 * 119.74216 * 359.41830 * 21 12 11 23 23 C 1.51502 * 104.62860 * 0.37469 * 5 4 2 24 24 O 1.20830 * 125.94740 * 159.59622 * 23 5 4 25 25 O 1.34570 * 108.11361 * 339.61630 * 23 5 4 26 26 H 1.09006 * 109.46772 * 297.87833 * 1 2 3 27 27 H 1.09003 * 109.47521 * 57.87085 * 1 2 3 28 28 H 1.08994 * 109.47710 * 177.87683 * 1 2 3 29 29 H 1.08999 * 109.47591 * 182.12418 * 3 2 1 30 30 H 1.08999 * 109.47182 * 302.12930 * 3 2 1 31 31 H 1.09000 * 109.46969 * 62.12424 * 3 2 1 32 32 H 1.09002 * 110.69792 * 18.32180 * 4 2 1 33 33 H 1.09003 * 110.84635 * 255.17541 * 4 2 1 34 34 H 1.08998 * 109.46972 * 181.62966 * 6 5 4 35 35 H 1.08996 * 109.47370 * 301.63361 * 6 5 4 36 36 H 1.09008 * 109.46833 * 61.63518 * 6 5 4 37 37 H 1.00901 * 110.99943 * 303.96127 * 7 5 4 38 38 H 1.08992 * 109.47144 * 59.99800 * 8 7 5 39 39 H 1.09002 * 109.47082 * 300.00123 * 8 7 5 40 40 H 1.08000 * 119.87421 * 0.02562 * 10 9 8 41 41 H 1.08002 * 120.12578 * 180.02562 * 11 10 9 42 42 H 0.97003 * 119.99973 * 180.02562 * 16 15 13 43 43 H 1.07995 * 120.13004 * 179.70079 * 21 12 11 44 44 H 1.07997 * 119.87414 * 180.32008 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 6 2.0662 -0.7699 1.2259 5 6 3.2145 -1.6152 0.6319 6 6 4.5445 -1.2477 1.2929 7 7 2.9374 -3.0477 0.8028 8 6 4.0224 -3.8643 0.2425 9 6 3.7037 -5.3244 0.4366 10 6 2.9951 -6.0094 -0.5385 11 6 2.6990 -7.3429 -0.3720 12 6 3.1188 -8.0112 0.7930 13 6 2.8207 -9.3814 0.9746 14 1 1.9746 -9.8217 0.4680 15 6 3.6220 -10.1669 1.8108 16 7 4.8145 -9.7516 2.1529 17 14 2.9890 -11.8085 2.4384 18 1 3.3169 -12.8736 1.4570 19 1 1.5165 -11.7359 2.6164 20 1 3.6303 -12.1211 3.7409 21 6 3.8326 -7.3045 1.7784 22 6 4.1230 -5.9728 1.5880 23 6 3.2350 -1.2529 -0.8391 24 8 4.1654 -1.4065 -1.5945 25 8 2.0367 -0.7299 -1.1578 26 1 -0.3633 0.4806 0.9085 27 1 -0.3634 0.5465 -0.8703 28 1 -0.3634 -1.0269 -0.0381 29 1 3.1498 1.4198 -0.0381 30 1 1.6740 1.9654 -0.8703 31 1 1.7359 1.9425 0.9084 32 1 1.2923 -1.4122 1.6461 33 1 2.4453 -0.0812 1.9810 34 1 5.3474 -1.8315 0.8429 35 1 4.7416 -0.1857 1.1468 36 1 4.4919 -1.4641 2.3599 37 1 2.7805 -3.2723 1.7739 38 1 4.9564 -3.6259 0.7512 39 1 4.1240 -3.6525 -0.8219 40 1 2.6750 -5.4946 -1.4323 41 1 2.1472 -7.8748 -1.1330 42 1 5.3701 -10.2963 2.7322 43 1 4.1554 -7.8064 2.6785 44 1 4.6752 -5.4297 2.3405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930871443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:11 Heat of formation + Delta-G solvation = -85.780362 kcal Electronic energy + Delta-G solvation = -24768.912211 eV Core-core repulsion = 21263.810395 eV Total energy + Delta-G solvation = -3505.101817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 5.05 seconds Orbital eigenvalues (eV) -42.49084 -39.62685 -38.93657 -37.61732 -35.65340 -34.55892 -32.95362 -31.21684 -30.71854 -28.51807 -28.14677 -27.64380 -25.06872 -24.81019 -22.90623 -22.33889 -21.70523 -20.34088 -19.22465 -17.98817 -17.91725 -17.17543 -17.00508 -16.38512 -16.07607 -15.85648 -15.66982 -15.10994 -14.97977 -14.72393 -14.61959 -14.32479 -14.09794 -13.81933 -13.58696 -13.39049 -13.35199 -13.14600 -13.01749 -12.90800 -12.79201 -12.66114 -12.59863 -12.45584 -12.36362 -12.08453 -11.81983 -11.52031 -11.36404 -11.28164 -11.10054 -10.99098 -9.57636 -9.34857 -9.20456 -8.64123 -6.34053 0.76598 0.94746 1.14204 1.38372 1.48224 1.54440 2.19852 2.21256 2.66885 2.87891 3.20174 3.31197 3.65538 3.75110 3.83902 3.94863 4.00563 4.18008 4.29890 4.52917 4.55254 4.56952 4.62501 4.65219 4.71334 4.76872 4.78424 4.83995 4.89974 4.97778 5.02052 5.11473 5.16278 5.20286 5.30987 5.35604 5.46414 5.69782 5.72845 5.83836 6.00719 6.09447 6.20089 6.31987 6.37382 6.40022 6.69283 6.94056 7.02967 8.33027 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029701 B = 0.002916 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.489501 B = 9598.699302 C = 9753.799933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.096 3.904 3 C -0.164 4.164 4 C -0.130 4.130 5 C 0.053 3.947 6 C -0.171 4.171 7 N -0.661 5.661 8 C 0.127 3.873 9 C -0.201 4.201 10 C -0.076 4.076 11 C -0.244 4.244 12 C 0.082 3.918 13 C -0.502 4.502 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 0.982 3.018 18 H -0.264 1.264 19 H -0.259 1.259 20 H -0.264 1.264 21 C -0.186 4.186 22 C -0.090 4.090 23 C 0.497 3.503 24 O -0.490 6.490 25 O -0.364 6.364 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.361 0.639 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.289 0.711 43 H 0.104 0.896 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 20.443 4.780 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.061 3.939 3 C -0.221 4.221 4 C -0.167 4.167 5 C -0.040 4.040 6 C -0.230 4.230 7 N -0.296 5.296 8 C -0.001 4.001 9 C -0.203 4.203 10 C -0.094 4.094 11 C -0.264 4.264 12 C 0.080 3.920 13 C -0.531 4.531 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.451 5.451 17 Si 0.803 3.197 18 H -0.188 1.188 19 H -0.183 1.183 20 H -0.188 1.188 21 C -0.205 4.205 22 C -0.109 4.109 23 C 0.338 3.662 24 O -0.374 6.374 25 O -0.283 6.283 26 H 0.131 0.869 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.183 0.817 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.491 20.283 3.781 21.351 hybrid contribution 0.824 -1.122 0.298 1.424 sum -4.668 19.161 4.080 20.139 Atomic orbital electron populations 1.21934 0.89477 1.03550 1.04804 1.23402 0.97286 0.91872 0.81382 1.22351 1.01171 0.93107 1.05451 1.23263 0.96992 0.98820 0.97610 1.22381 0.98298 0.91351 0.91937 1.22421 0.95276 1.03107 1.02198 1.60666 1.43780 1.00309 1.24884 1.20495 0.91873 0.89150 0.98585 1.19183 1.08679 0.94836 0.97554 1.20570 0.97452 0.93690 0.97721 1.21126 1.10902 0.95726 0.98637 1.17957 0.90044 0.93601 0.90384 1.19830 1.12452 0.94755 1.26070 0.90913 1.26752 0.93532 1.03829 0.93779 1.69870 1.07755 1.39647 1.27813 0.85212 0.79668 0.76418 0.78413 1.18829 1.18295 1.18808 1.21263 1.05651 0.93753 0.99859 1.20747 0.99221 0.94292 0.96644 1.23521 0.79976 0.72479 0.90236 1.90640 1.34856 1.52057 1.59821 1.87304 1.32216 1.65422 1.43315 0.86914 0.91266 0.92236 0.92910 0.91084 0.86637 0.87288 0.85226 0.93036 0.90114 0.88809 0.81657 0.93918 0.93258 0.88481 0.89024 0.90081 0.87849 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.82 71.98 0.63 -1.12 16 2 C 0.10 1.58 1.25 -10.33 -0.01 1.56 16 3 C -0.16 -1.84 8.70 71.98 0.63 -1.22 16 4 C -0.13 -1.88 5.70 31.56 0.18 -1.70 16 5 C 0.05 1.24 0.93 3.54 0.00 1.24 16 6 C -0.17 -3.38 7.99 71.98 0.58 -2.80 16 7 N -0.66 -19.20 6.03 -474.11 -2.86 -22.06 16 8 C 0.13 4.57 5.12 85.56 0.44 5.01 16 9 C -0.20 -8.75 5.41 -19.67 -0.11 -8.86 16 10 C -0.08 -3.58 9.67 22.22 0.21 -3.36 16 11 C -0.24 -12.71 9.80 22.73 0.22 -12.49 16 12 C 0.08 4.58 5.57 -21.29 -0.12 4.46 16 13 C -0.50 -27.74 9.06 23.46 0.21 -27.53 16 14 H 0.07 3.91 7.90 -2.91 -0.02 3.88 16 15 C 0.04 1.83 5.15 85.26 0.44 2.27 16 16 N -0.82 -43.48 10.95 21.83 0.24 -43.24 16 17 Si 0.98 38.50 29.59 68.60 2.03 40.53 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 C -0.19 -9.79 8.69 22.73 0.20 -9.59 16 22 C -0.09 -4.10 9.67 22.22 0.21 -3.88 16 23 C 0.50 15.37 6.48 71.49 0.46 15.83 16 24 O -0.49 -18.68 16.78 21.54 0.36 -18.32 16 25 O -0.36 -10.24 10.60 -55.16 -0.58 -10.82 16 26 H 0.11 0.66 8.14 -2.38 -0.02 0.65 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.70 7.95 -2.39 -0.02 0.68 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 1.52 7.65 -2.39 -0.02 1.50 16 33 H 0.13 0.99 7.41 -2.39 -0.02 0.97 16 34 H 0.05 1.28 6.42 -2.39 -0.02 1.26 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.36 9.39 8.75 -89.69 -0.78 8.60 16 38 H 0.04 1.44 6.26 -2.39 -0.01 1.43 16 39 H 0.05 1.99 6.52 -2.39 -0.02 1.97 16 40 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 43 H 0.10 5.65 6.17 -2.91 -0.02 5.64 16 44 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -68.84 357.76 3.59 -65.25 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.22 Total: 30.83 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 4.18 Total: -42.18 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -2.62 Total: -65.30 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.22 Total: -29.14 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -68.84 3.59 -65.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930871443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.528 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.05 seconds