Wall clock time and date at job start Tue Mar 31 2020 07:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.40069 * 2 1 4 4 O 1.21274 * 119.99979 * 120.10621 * 3 2 1 5 5 N 1.34780 * 119.99918 * 300.10938 * 3 2 1 6 6 C 1.46501 * 119.99956 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46952 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.46688 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46792 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99814 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99758 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99816 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00138 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47543 * 89.99929 * 13 11 9 15 15 H 1.48508 * 109.46864 * 209.99871 * 13 11 9 16 16 H 1.48499 * 109.47223 * 329.99477 * 13 11 9 17 17 C 1.53075 * 109.43801 * 119.89342 * 2 1 3 18 18 C 1.53406 * 108.29357 * 168.24933 * 17 2 1 19 19 O 1.42836 * 108.37202 * 295.26017 * 18 17 2 20 20 C 1.35847 * 117.85815 * 49.16502 * 19 18 17 21 21 C 1.39147 * 118.49505 * 162.99697 * 20 19 18 22 22 C 1.37963 * 120.21188 * 179.75491 * 21 20 19 23 23 C 1.38291 * 119.96265 * 359.97438 * 22 21 20 24 24 C 1.38106 * 119.97917 * 0.34123 * 23 22 21 25 25 C 1.38369 * 121.80888 * 342.88812 * 20 19 18 26 26 H 1.09007 * 109.47168 * 179.89118 * 1 2 3 27 27 H 1.09001 * 109.47323 * 299.88937 * 1 2 3 28 28 H 1.08999 * 109.47243 * 59.89365 * 1 2 3 29 29 H 0.97002 * 120.00336 * 359.97438 * 5 3 2 30 30 H 1.09001 * 109.46841 * 299.99471 * 6 5 3 31 31 H 1.09000 * 109.46993 * 60.00166 * 6 5 3 32 32 H 1.08991 * 109.47227 * 299.99611 * 7 6 5 33 33 H 1.09000 * 109.46833 * 60.00440 * 7 6 5 34 34 H 1.09001 * 109.47087 * 299.99831 * 8 7 6 35 35 H 1.08996 * 109.47264 * 60.00237 * 8 7 6 36 36 H 0.97003 * 119.99847 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.69608 * 287.94651 * 17 2 1 38 38 H 1.09003 * 109.69430 * 48.54717 * 17 2 1 39 39 H 1.09001 * 109.68751 * 54.98441 * 18 17 2 40 40 H 1.08999 * 109.68273 * 175.54518 * 18 17 2 41 41 H 1.07995 * 119.89231 * 359.72401 * 21 20 19 42 42 H 1.08002 * 120.02189 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.01243 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.84111 * 179.75515 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4214 0.0000 4 8 2.7289 1.8184 0.9086 5 7 1.7021 2.2516 -1.0097 6 6 2.1883 3.6335 -1.0095 7 6 1.6757 4.3547 -2.2578 8 6 2.1830 5.7982 -2.2571 9 6 1.6776 6.5087 -3.4863 10 1 1.0564 5.9834 -4.1966 11 6 2.0075 7.8297 -3.7034 12 7 1.5660 8.4500 -4.7759 13 14 3.0812 8.7385 -2.4744 14 1 4.5088 8.5786 -2.8509 15 1 2.7268 10.1807 -2.4788 16 1 2.8617 8.1790 -1.1165 17 6 2.0394 -0.7194 1.2514 18 6 3.5443 -0.9664 1.0859 19 8 3.7354 -1.8653 -0.0076 20 6 3.0964 -1.5904 -1.1745 21 6 3.5331 -2.2214 -2.3352 22 6 2.9065 -1.9721 -3.5387 23 6 1.8404 -1.0929 -3.5933 24 6 1.4085 -0.4599 -2.4444 25 6 2.0317 -0.7086 -1.2327 26 1 -0.3634 -1.0277 -0.0020 27 1 -0.3634 0.5121 0.8910 28 1 -0.3634 0.5155 -0.8890 29 1 1.1438 1.9340 -1.7367 30 1 1.8254 4.1461 -0.1186 31 1 3.2783 3.6352 -1.0112 32 1 2.0389 3.8421 -3.1484 33 1 0.5857 4.3530 -2.2565 34 1 1.8194 6.3107 -1.3664 35 1 3.2729 5.8003 -2.2581 36 1 1.7984 9.3792 -4.9288 37 1 1.8634 -0.0981 2.1295 38 1 1.5210 -1.6716 1.3644 39 1 4.0506 -0.0235 0.8789 40 1 3.9466 -1.4071 1.9980 41 1 4.3656 -2.9081 -2.2938 42 1 3.2482 -2.4633 -4.4378 43 1 1.3490 -0.8974 -4.5349 44 1 0.5783 0.2294 -2.4902 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931967610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:37 Heat of formation + Delta-G solvation = -67.557770 kcal Electronic energy + Delta-G solvation = -24976.223518 eV Core-core repulsion = 21471.911892 eV Total energy + Delta-G solvation = -3504.311626 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.58017 -39.28189 -37.73944 -35.76705 -35.31996 -33.34153 -31.54301 -30.78565 -30.49154 -28.95009 -27.29449 -24.76149 -24.10817 -23.10781 -22.12468 -21.36284 -20.57932 -19.25563 -18.04513 -17.44754 -16.80536 -16.65460 -15.82535 -15.68387 -15.45245 -15.13833 -14.51122 -14.40872 -14.24244 -13.96810 -13.70948 -13.54543 -13.24406 -12.83316 -12.72022 -12.53638 -12.29360 -12.12409 -11.99782 -11.92496 -11.83425 -11.25762 -11.11009 -10.93251 -10.86333 -10.60556 -10.24518 -10.01337 -9.82142 -9.66235 -9.25435 -9.01579 -8.87788 -8.57505 -8.36034 -6.08317 -4.07115 1.02812 1.22267 2.60403 3.10009 3.18937 3.29668 3.37272 3.41229 3.61591 4.13468 4.29048 4.42539 4.44522 4.55233 4.67465 4.88043 5.00313 5.07986 5.17236 5.20324 5.23689 5.25795 5.31324 5.40703 5.47702 5.54316 5.61304 5.69744 5.72157 5.75654 5.80150 5.97144 6.07850 6.19990 6.30102 6.31651 6.40555 6.55730 6.64510 6.75381 7.19572 7.24139 7.33209 7.54374 7.74051 8.21677 8.48137 8.95308 9.53948 11.04912 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.003366 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.630012 B = 8317.256411 C = 8964.358511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.037 4.037 3 C 0.522 3.478 4 O -0.541 6.541 5 N -0.719 5.719 6 C 0.113 3.887 7 C -0.113 4.113 8 C -0.011 4.011 9 C -0.522 4.522 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.879 3.121 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.265 1.265 17 C -0.134 4.134 18 C 0.058 3.942 19 O -0.318 6.318 20 C 0.143 3.857 21 C -0.151 4.151 22 C -0.082 4.082 23 C -0.149 4.149 24 C -0.081 4.081 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.398 0.602 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -24.028 8.407 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.040 4.040 3 C 0.307 3.693 4 O -0.419 6.419 5 N -0.370 5.370 6 C -0.010 4.010 7 C -0.151 4.151 8 C -0.048 4.048 9 C -0.560 4.560 10 H 0.090 0.910 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.707 3.293 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.172 4.172 18 C -0.017 4.017 19 O -0.232 6.232 20 C 0.097 3.903 21 C -0.170 4.170 22 C -0.100 4.100 23 C -0.167 4.167 24 C -0.099 4.099 25 C -0.156 4.156 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.029 -23.684 9.020 25.343 hybrid contribution 0.144 0.733 0.159 0.764 sum 0.115 -22.951 9.179 24.718 Atomic orbital electron populations 1.21903 0.91115 1.03352 1.03106 1.19671 0.97807 0.92245 0.94271 1.20267 0.80259 0.86709 0.82059 1.90666 1.38019 1.77107 1.36107 1.46195 1.53022 1.13002 1.24732 1.21690 0.99318 0.79642 1.00300 1.21710 1.00634 0.98045 0.94749 1.19500 0.96186 0.91168 0.97996 1.21087 1.32367 0.96343 1.06227 0.91002 1.25020 0.95675 0.97506 0.95210 1.69911 1.45738 1.11632 1.26865 0.86784 0.81083 0.78933 0.82550 1.20228 1.21333 1.18931 1.22130 0.96435 1.01201 0.97451 1.23120 0.96274 0.94233 0.88071 1.85972 1.67388 1.50486 1.19331 1.18688 0.90765 0.94749 0.86069 1.20610 1.02469 1.03703 0.90195 1.20979 0.95053 0.97051 0.96940 1.21049 0.98515 0.98710 0.98427 1.20941 0.98897 0.98597 0.91441 1.19455 0.98758 1.02397 0.94977 0.90965 0.91310 0.91474 0.76725 0.91638 0.91780 0.92095 0.92096 0.96314 0.96761 0.92679 0.88605 0.89868 0.90315 0.87317 0.85175 0.85273 0.85426 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 7.89 37.16 0.29 -0.88 16 2 C -0.04 -0.40 0.55 -156.74 -0.09 -0.49 16 3 C 0.52 7.40 6.13 -10.98 -0.07 7.33 16 4 O -0.54 -9.29 14.37 5.56 0.08 -9.21 16 5 N -0.72 -10.02 5.29 -60.29 -0.32 -10.34 16 6 C 0.11 1.88 5.67 -4.04 -0.02 1.85 16 7 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 8 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 9 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 10 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 13 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 17 C -0.13 -1.35 4.61 -26.48 -0.12 -1.47 16 18 C 0.06 0.63 6.87 37.37 0.26 0.89 16 19 O -0.32 -3.87 10.27 -19.26 -0.20 -4.07 16 20 C 0.14 1.72 6.47 -39.20 -0.25 1.47 16 21 C -0.15 -1.60 9.94 -39.34 -0.39 -1.99 16 22 C -0.08 -0.76 10.04 -39.66 -0.40 -1.16 16 23 C -0.15 -1.40 10.04 -39.61 -0.40 -1.80 16 24 C -0.08 -0.81 8.09 -39.53 -0.32 -1.13 16 25 C -0.15 -1.75 4.68 -104.44 -0.49 -2.24 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.52 5.96 -51.93 -0.31 0.21 16 29 H 0.40 4.70 5.66 -40.82 -0.23 4.47 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 35 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.10 0.96 7.69 -51.93 -0.40 0.56 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.08 1.04 6.45 -51.93 -0.33 0.70 16 40 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 1.05 5.30 -52.48 -0.28 0.77 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -32.92 348.92 -8.31 -41.23 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.55 Total: 2.33 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.68 Total: -15.36 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.45 Total: -37.20 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.12 Total: -13.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.92 -8.31 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.332 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds