Wall clock time and date at job start Tue Mar 31 2020 07:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.40069 * 2 1 4 4 O 1.21274 * 119.99979 * 120.10621 * 3 2 1 5 5 N 1.34780 * 119.99918 * 300.10938 * 3 2 1 6 6 C 1.46501 * 119.99956 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46952 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.46688 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46792 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99814 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99758 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99816 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00138 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47543 * 89.99929 * 13 11 9 15 15 H 1.48508 * 109.46864 * 209.99871 * 13 11 9 16 16 H 1.48499 * 109.47223 * 329.99477 * 13 11 9 17 17 C 1.53075 * 109.43801 * 119.89342 * 2 1 3 18 18 C 1.53406 * 108.29357 * 168.24933 * 17 2 1 19 19 O 1.42836 * 108.37202 * 295.26017 * 18 17 2 20 20 C 1.35847 * 117.85815 * 49.16502 * 19 18 17 21 21 C 1.39147 * 118.49505 * 162.99697 * 20 19 18 22 22 C 1.37963 * 120.21188 * 179.75491 * 21 20 19 23 23 C 1.38291 * 119.96265 * 359.97438 * 22 21 20 24 24 C 1.38106 * 119.97917 * 0.34123 * 23 22 21 25 25 C 1.38369 * 121.80888 * 342.88812 * 20 19 18 26 26 H 1.09007 * 109.47168 * 179.89118 * 1 2 3 27 27 H 1.09001 * 109.47323 * 299.88937 * 1 2 3 28 28 H 1.08999 * 109.47243 * 59.89365 * 1 2 3 29 29 H 0.97002 * 120.00336 * 359.97438 * 5 3 2 30 30 H 1.09001 * 109.46841 * 299.99471 * 6 5 3 31 31 H 1.09000 * 109.46993 * 60.00166 * 6 5 3 32 32 H 1.08991 * 109.47227 * 299.99611 * 7 6 5 33 33 H 1.09000 * 109.46833 * 60.00440 * 7 6 5 34 34 H 1.09001 * 109.47087 * 299.99831 * 8 7 6 35 35 H 1.08996 * 109.47264 * 60.00237 * 8 7 6 36 36 H 0.97003 * 119.99847 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.69608 * 287.94651 * 17 2 1 38 38 H 1.09003 * 109.69430 * 48.54717 * 17 2 1 39 39 H 1.09001 * 109.68751 * 54.98441 * 18 17 2 40 40 H 1.08999 * 109.68273 * 175.54518 * 18 17 2 41 41 H 1.07995 * 119.89231 * 359.72401 * 21 20 19 42 42 H 1.08002 * 120.02189 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.01243 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.84111 * 179.75515 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4214 0.0000 4 8 2.7289 1.8184 0.9086 5 7 1.7021 2.2516 -1.0097 6 6 2.1883 3.6335 -1.0095 7 6 1.6757 4.3547 -2.2578 8 6 2.1830 5.7982 -2.2571 9 6 1.6776 6.5087 -3.4863 10 1 1.0564 5.9834 -4.1966 11 6 2.0075 7.8297 -3.7034 12 7 1.5660 8.4500 -4.7759 13 14 3.0812 8.7385 -2.4744 14 1 4.5088 8.5786 -2.8509 15 1 2.7268 10.1807 -2.4788 16 1 2.8617 8.1790 -1.1165 17 6 2.0394 -0.7194 1.2514 18 6 3.5443 -0.9664 1.0859 19 8 3.7354 -1.8653 -0.0076 20 6 3.0964 -1.5904 -1.1745 21 6 3.5331 -2.2214 -2.3352 22 6 2.9065 -1.9721 -3.5387 23 6 1.8404 -1.0929 -3.5933 24 6 1.4085 -0.4599 -2.4444 25 6 2.0317 -0.7086 -1.2327 26 1 -0.3634 -1.0277 -0.0020 27 1 -0.3634 0.5121 0.8910 28 1 -0.3634 0.5155 -0.8890 29 1 1.1438 1.9340 -1.7367 30 1 1.8254 4.1461 -0.1186 31 1 3.2783 3.6352 -1.0112 32 1 2.0389 3.8421 -3.1484 33 1 0.5857 4.3530 -2.2565 34 1 1.8194 6.3107 -1.3664 35 1 3.2729 5.8003 -2.2581 36 1 1.7984 9.3792 -4.9288 37 1 1.8634 -0.0981 2.1295 38 1 1.5210 -1.6716 1.3644 39 1 4.0506 -0.0235 0.8789 40 1 3.9466 -1.4071 1.9980 41 1 4.3656 -2.9081 -2.2938 42 1 3.2482 -2.4633 -4.4378 43 1 1.3490 -0.8974 -4.5349 44 1 0.5783 0.2294 -2.4902 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931967610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:36 Heat of formation + Delta-G solvation = -88.005774 kcal Electronic energy + Delta-G solvation = -24977.110210 eV Core-core repulsion = 21471.911892 eV Total energy + Delta-G solvation = -3505.198318 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46102 -40.32632 -38.52773 -37.12428 -36.28219 -35.17067 -33.29722 -31.64131 -31.25297 -29.79245 -28.91693 -25.74648 -25.12092 -24.31802 -23.09834 -22.40650 -22.14560 -20.35691 -18.97331 -18.85987 -18.27775 -17.53304 -16.97901 -16.73231 -16.65874 -16.21627 -15.92260 -15.64265 -15.21230 -14.90458 -14.81093 -14.76116 -14.36794 -14.15377 -13.80436 -13.70275 -13.52335 -13.29752 -12.97295 -12.82193 -12.76938 -12.70534 -12.58837 -12.08048 -11.92094 -11.80130 -11.66553 -11.61620 -11.38915 -11.34860 -10.92621 -10.77053 -10.15692 -9.78054 -9.17153 -8.30107 -6.33909 0.25706 0.44083 1.35947 1.37484 1.48985 1.51815 2.10912 2.30846 2.35385 2.81237 3.05732 3.34735 3.47421 3.62565 3.78550 3.78908 4.07164 4.15630 4.21792 4.26028 4.28562 4.44503 4.46411 4.47383 4.50419 4.58454 4.72621 4.78553 4.84638 4.86035 4.93483 4.97105 5.00877 5.03736 5.13434 5.33196 5.34087 5.44546 5.46230 5.53003 5.57792 5.63813 5.83843 6.26482 6.42251 6.45044 6.73918 7.11877 7.30975 8.86259 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.003366 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.630012 B = 8317.256411 C = 8964.358511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C 0.519 3.481 4 O -0.574 6.574 5 N -0.713 5.713 6 C 0.126 3.874 7 C -0.100 4.100 8 C -0.011 4.011 9 C -0.530 4.530 10 H 0.039 0.961 11 C 0.007 3.993 12 N -0.949 5.949 13 Si 0.945 3.055 14 H -0.269 1.269 15 H -0.284 1.284 16 H -0.248 1.248 17 C -0.132 4.132 18 C 0.056 3.944 19 O -0.328 6.328 20 C 0.117 3.883 21 C -0.163 4.163 22 C -0.082 4.082 23 C -0.153 4.153 24 C -0.088 4.088 25 C -0.166 4.166 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.409 0.591 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.022 0.978 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 -25.259 9.122 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.034 4.034 3 C 0.306 3.694 4 O -0.454 6.454 5 N -0.365 5.365 6 C 0.002 3.998 7 C -0.138 4.138 8 C -0.049 4.049 9 C -0.568 4.568 10 H 0.057 0.943 11 C -0.190 4.190 12 N -0.590 5.590 13 Si 0.769 3.231 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.172 1.172 17 C -0.170 4.170 18 C -0.019 4.019 19 O -0.243 6.243 20 C 0.072 3.928 21 C -0.182 4.182 22 C -0.099 4.099 23 C -0.171 4.171 24 C -0.106 4.106 25 C -0.167 4.167 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.246 0.754 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.206 -24.946 9.727 26.776 hybrid contribution 0.174 1.058 -0.168 1.085 sum -0.032 -23.888 9.559 25.730 Atomic orbital electron populations 1.21945 0.89117 1.04614 1.03646 1.19676 0.99296 0.89711 0.94740 1.20890 0.79437 0.87871 0.81202 1.90649 1.39422 1.78002 1.37354 1.46054 1.53107 1.11978 1.25322 1.21338 0.98588 0.80971 0.98898 1.21483 1.00915 0.95534 0.95874 1.19459 0.96254 0.93549 0.95672 1.21446 1.31530 0.96641 1.07201 0.94301 1.25951 0.97273 0.98650 0.97170 1.70053 1.47643 1.12209 1.29089 0.85729 0.79216 0.77554 0.80600 1.19376 1.20942 1.17176 1.22156 0.95893 1.01921 0.97007 1.23166 0.96911 0.93183 0.88631 1.85959 1.67815 1.50754 1.19730 1.19027 0.91494 0.95877 0.86448 1.20879 1.03006 1.03937 0.90366 1.21326 0.94588 0.96659 0.97359 1.21393 0.98427 0.98200 0.99086 1.21195 0.99251 0.98885 0.91242 1.19544 0.99006 1.02657 0.95495 0.89353 0.91086 0.90664 0.75377 0.91973 0.92809 0.91937 0.91431 0.95994 0.96443 0.92494 0.88732 0.88014 0.93162 0.85070 0.84330 0.82766 0.83415 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.89 71.98 0.57 -1.44 16 2 C -0.03 -0.64 0.55 -53.63 -0.03 -0.67 16 3 C 0.52 14.26 6.13 87.66 0.54 14.79 16 4 O -0.57 -19.63 14.37 -3.01 -0.04 -19.67 16 5 N -0.71 -18.93 5.29 -463.05 -2.45 -21.37 16 6 C 0.13 4.02 5.67 86.38 0.49 4.51 16 7 C -0.10 -3.61 5.27 30.60 0.16 -3.45 16 8 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 9 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 10 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 11 C 0.01 0.38 5.47 84.65 0.46 0.84 16 12 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 13 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 16 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 17 C -0.13 -2.50 4.61 30.76 0.14 -2.36 16 18 C 0.06 1.19 6.87 72.12 0.50 1.69 16 19 O -0.33 -7.85 10.27 -91.83 -0.94 -8.79 16 20 C 0.12 2.71 6.47 22.52 0.15 2.86 16 21 C -0.16 -3.25 9.94 22.42 0.22 -3.03 16 22 C -0.08 -1.33 10.04 22.22 0.22 -1.11 16 23 C -0.15 -2.52 10.04 22.25 0.22 -2.29 16 24 C -0.09 -1.59 8.09 22.30 0.18 -1.40 16 25 C -0.17 -3.52 4.68 -19.75 -0.09 -3.61 16 26 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.98 5.96 -2.39 -0.01 0.96 16 29 H 0.41 8.89 5.66 -92.71 -0.52 8.36 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 35 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.09 1.81 7.69 -2.39 -0.02 1.79 16 38 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 39 H 0.05 1.36 6.45 -2.39 -0.02 1.34 16 40 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.14 1.99 5.30 -2.91 -0.02 1.97 16 Total: -1.00 -71.47 348.92 3.27 -68.20 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.42 Total: 18.95 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.10 Total: -24.74 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.15 Total: -80.08 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.99 Total: -28.46 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -71.47 3.27 -68.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.804 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds