Wall clock time and date at job start Tue Mar 31 2020 10:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47190 * 2 1 4 4 C 1.50698 * 120.00241 * 270.64444 * 3 2 1 5 5 C 1.32995 * 120.00008 * 90.64687 * 3 2 1 6 6 C 1.50700 * 120.00037 * 352.48250 * 5 3 2 7 7 C 1.47105 * 120.00106 * 172.48330 * 5 3 2 8 8 O 1.21612 * 119.99566 * 353.74230 * 7 5 3 9 9 N 1.34775 * 120.00117 * 173.74182 * 7 5 3 10 10 C 1.46503 * 119.99896 * 179.97438 * 9 7 5 11 11 C 1.50694 * 109.46772 * 180.02562 * 10 9 7 12 12 C 1.38320 * 119.96595 * 270.02002 * 11 10 9 13 13 C 1.38283 * 120.13995 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06749 * 359.67784 * 13 12 11 15 15 C 1.38859 * 119.93102 * 0.59911 * 14 13 12 16 16 O 1.35745 * 120.06920 * 179.69938 * 15 14 13 17 17 C 1.34831 * 117.00317 * 356.48605 * 16 15 14 18 18 H 1.08001 * 119.99811 * 5.13124 * 17 16 15 19 19 C 1.38651 * 120.00351 * 185.13411 * 17 16 15 20 20 N 1.31553 * 120.00346 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99772 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46771 * 90.00331 * 21 19 17 23 23 H 1.48501 * 109.47074 * 210.00151 * 21 19 17 24 24 H 1.48500 * 109.47298 * 330.00263 * 21 19 17 25 25 C 1.38081 * 119.96592 * 90.00431 * 11 10 9 26 26 H 1.09004 * 109.46903 * 59.99858 * 1 2 3 27 27 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46942 * 300.00459 * 1 2 3 29 29 H 1.08991 * 109.47537 * 239.99914 * 2 1 3 30 30 H 1.08998 * 109.47060 * 119.99766 * 2 1 3 31 31 H 1.09004 * 109.47485 * 263.36530 * 4 3 2 32 32 H 1.09009 * 109.46704 * 23.35977 * 4 3 2 33 33 H 1.08993 * 109.47131 * 143.35909 * 4 3 2 34 34 H 1.09008 * 109.47016 * 204.93223 * 6 5 3 35 35 H 1.09002 * 109.46971 * 324.92287 * 6 5 3 36 36 H 1.08995 * 109.47499 * 84.92770 * 6 5 3 37 37 H 0.96996 * 119.99614 * 0.02562 * 9 7 5 38 38 H 1.09003 * 109.46841 * 59.99984 * 10 9 7 39 39 H 1.08997 * 109.47040 * 300.00491 * 10 9 7 40 40 H 1.07999 * 119.93248 * 359.97438 * 12 11 10 41 41 H 1.08003 * 119.96653 * 179.97438 * 13 12 11 42 42 H 1.07997 * 120.03745 * 180.31613 * 14 13 12 43 43 H 0.96999 * 120.00076 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.03492 * 0.03982 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2697 2.1361 -1.3050 5 6 2.2663 2.0434 1.1517 6 6 1.8712 1.3942 2.4530 7 6 2.9106 3.3658 1.1553 8 8 3.3321 3.8396 0.1176 9 7 3.0338 4.0523 2.3086 10 6 3.6761 5.3690 2.3122 11 6 3.6872 5.9185 3.7154 12 6 2.6296 6.6889 4.1641 13 6 2.6363 7.1954 5.4508 14 6 3.6968 6.9277 6.2943 15 6 4.7627 6.1595 5.8450 16 8 5.8092 5.8998 6.6697 17 6 5.7866 6.4773 7.8878 18 1 4.9229 7.0455 8.2001 19 6 6.8722 6.3417 8.7396 20 7 6.8500 6.9047 9.9284 21 14 8.3659 5.3582 8.1997 22 1 9.3302 6.2576 7.5168 23 1 9.0138 4.7492 9.3890 24 1 7.9409 4.2861 7.2642 25 6 4.7530 5.6522 4.5519 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3242 2.0651 -1.5718 32 1 1.6653 1.6758 -2.0867 33 1 1.9911 3.1847 -1.2004 34 1 1.7174 2.1628 3.2106 35 1 0.9477 0.8323 2.3131 36 1 2.6624 0.7181 2.7768 37 1 2.6979 3.6742 3.1362 38 1 3.1221 6.0453 1.6611 39 1 4.7002 5.2747 1.9511 40 1 1.7972 6.8959 3.5078 41 1 1.8093 7.7969 5.7981 42 1 3.6991 7.3192 7.3008 43 1 7.6093 6.8095 10.5244 44 1 5.5786 5.0510 4.2009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116508869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:02 Heat of formation + Delta-G solvation = -37.608473 kcal Electronic energy + Delta-G solvation = -23779.947237 eV Core-core repulsion = 20276.934310 eV Total energy + Delta-G solvation = -3503.012927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.12783 -39.25647 -37.26520 -36.63182 -34.65789 -32.46475 -32.03880 -30.80994 -29.93584 -29.34533 -26.19677 -25.24120 -25.05989 -23.99059 -21.87578 -21.07481 -20.67497 -18.76086 -17.76528 -17.15452 -16.35717 -16.05454 -15.55862 -15.25170 -14.96299 -14.73016 -14.48496 -14.19933 -13.88902 -13.71633 -13.37985 -13.35545 -13.14394 -12.79809 -12.70223 -12.59749 -12.45798 -12.22683 -12.18801 -11.93766 -11.71647 -11.60639 -11.45039 -11.14449 -10.95118 -10.87936 -10.77959 -10.21936 -9.60804 -9.47435 -9.14052 -8.94378 -8.77046 -8.34067 -7.49388 -6.47806 -4.15230 1.24055 1.80697 2.14030 3.17757 3.22225 3.23816 3.36106 3.39902 4.18468 4.37686 4.51671 4.57692 4.65023 4.79779 4.85974 4.98416 5.01713 5.08805 5.22382 5.25763 5.40858 5.42176 5.46466 5.53547 5.63256 5.66697 5.68834 5.74075 5.76597 5.83237 5.87299 5.99620 6.02017 6.14029 6.36194 6.40781 6.47204 6.50731 6.66479 6.98685 7.10230 7.19178 7.47491 7.60902 7.71740 7.96047 8.27384 8.87122 9.48120 10.59580 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002786 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.379938 B =10047.270699 C =10542.076621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.040 4.040 4 C -0.118 4.118 5 C -0.197 4.197 6 C -0.116 4.116 7 C 0.550 3.450 8 O -0.545 6.545 9 N -0.719 5.719 10 C 0.168 3.832 11 C -0.075 4.075 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.213 4.213 15 C 0.157 3.843 16 O -0.215 6.215 17 C -0.392 4.392 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.877 5.877 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.172 4.172 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.280 0.720 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 -11.139 -16.671 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.042 4.042 4 C -0.174 4.174 5 C -0.200 4.200 6 C -0.173 4.173 7 C 0.339 3.661 8 O -0.425 6.425 9 N -0.371 5.371 10 C 0.045 3.955 11 C -0.075 4.075 12 C -0.206 4.206 13 C -0.095 4.095 14 C -0.233 4.233 15 C 0.104 3.896 16 O -0.120 6.120 17 C -0.467 4.467 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.515 5.515 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.192 4.192 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.239 0.761 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.152 0.848 43 H 0.090 0.910 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.125 -10.877 -17.193 23.187 hybrid contribution 0.512 -0.326 0.628 0.874 sum -10.613 -11.203 -16.564 22.639 Atomic orbital electron populations 1.21722 0.94363 1.01951 1.02464 1.20742 0.96552 0.92771 1.03279 1.22335 0.92218 0.94713 0.94893 1.21062 1.02187 1.01184 0.92979 1.21213 1.06634 0.95945 0.96181 1.20818 1.01769 1.00700 0.94001 1.18352 0.79411 0.84943 0.83384 1.90750 1.49762 1.70498 1.31468 1.46110 1.60842 1.19585 1.10535 1.20134 0.98341 0.83222 0.93773 1.19280 0.94895 0.99253 0.94113 1.20552 0.99167 1.04133 0.96775 1.20806 0.97283 0.98017 0.93427 1.21367 0.95399 1.04666 1.01820 1.19060 0.87844 0.92950 0.89715 1.83578 1.39165 1.63664 1.25606 1.20763 1.05617 1.32471 0.87843 0.87576 1.24468 0.98275 0.96720 0.94448 1.69640 1.32257 1.42306 1.07297 0.86186 0.81464 0.80821 0.78466 1.19821 1.20724 1.18354 1.20079 1.00330 1.06576 0.92167 0.92384 0.92187 0.92213 0.90594 0.90506 0.90483 0.92939 0.89556 0.91649 0.90992 0.91107 0.76145 0.90900 0.90909 0.87306 0.86967 0.84807 0.90960 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.73 37.16 0.36 -0.54 16 2 C -0.10 -0.68 5.38 -27.88 -0.15 -0.83 16 3 C -0.04 -0.39 5.35 -101.17 -0.54 -0.93 16 4 C -0.12 -1.21 8.44 36.00 0.30 -0.91 16 5 C -0.20 -2.13 5.99 -102.84 -0.62 -2.74 16 6 C -0.12 -0.98 8.67 36.01 0.31 -0.67 16 7 C 0.55 7.46 7.59 -12.66 -0.10 7.37 16 8 O -0.54 -8.78 13.30 5.27 0.07 -8.71 16 9 N -0.72 -9.33 5.51 -62.67 -0.35 -9.68 16 10 C 0.17 2.38 5.80 -5.19 -0.03 2.35 16 11 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 12 C -0.19 -2.93 9.70 -39.53 -0.38 -3.32 16 13 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 14 C -0.21 -4.38 9.17 -39.39 -0.36 -4.74 16 15 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 16 O -0.22 -5.52 8.59 0.06 0.00 -5.52 16 17 C -0.39 -10.77 9.94 30.89 0.31 -10.46 16 18 H 0.11 2.97 5.43 -52.49 -0.28 2.69 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -24.92 13.96 55.48 0.77 -24.15 16 21 Si 0.91 21.34 28.62 -169.99 -4.86 16.48 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.17 -3.25 9.65 -39.39 -0.38 -3.63 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.38 6.75 -51.93 -0.35 0.03 16 29 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.08 0.51 6.99 -51.93 -0.36 0.14 16 31 H 0.08 0.86 7.99 -51.93 -0.41 0.44 16 32 H 0.05 0.43 8.08 -51.92 -0.42 0.01 16 33 H 0.09 1.06 6.25 -51.93 -0.32 0.74 16 34 H 0.06 0.54 6.28 -51.92 -0.33 0.22 16 35 H 0.07 0.50 5.74 -51.93 -0.30 0.21 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.40 4.73 6.39 -40.82 -0.26 4.47 16 38 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 39 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 42 H 0.13 2.90 5.62 -52.49 -0.30 2.61 16 43 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -29.91 360.86 -7.77 -37.69 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.27 Total: 6.07 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.58 Total: -17.62 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.43 Total: -33.82 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.91 -7.77 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116508869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.079 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds