Wall clock time and date at job start Tue Mar 31 2020 10:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47190 * 2 1 4 4 C 1.50698 * 120.00241 * 270.64444 * 3 2 1 5 5 C 1.32995 * 120.00008 * 90.64687 * 3 2 1 6 6 C 1.50700 * 120.00037 * 352.48250 * 5 3 2 7 7 C 1.47105 * 120.00106 * 172.48330 * 5 3 2 8 8 O 1.21612 * 119.99566 * 353.74230 * 7 5 3 9 9 N 1.34775 * 120.00117 * 173.74182 * 7 5 3 10 10 C 1.46503 * 119.99896 * 179.97438 * 9 7 5 11 11 C 1.50694 * 109.46772 * 180.02562 * 10 9 7 12 12 C 1.38320 * 119.96595 * 270.02002 * 11 10 9 13 13 C 1.38283 * 120.13995 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06749 * 359.67784 * 13 12 11 15 15 C 1.38859 * 119.93102 * 0.59911 * 14 13 12 16 16 O 1.35745 * 120.06920 * 179.69938 * 15 14 13 17 17 C 1.34831 * 117.00317 * 356.48605 * 16 15 14 18 18 H 1.08001 * 119.99811 * 5.13124 * 17 16 15 19 19 C 1.38651 * 120.00351 * 185.13411 * 17 16 15 20 20 N 1.31553 * 120.00346 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99772 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46771 * 90.00331 * 21 19 17 23 23 H 1.48501 * 109.47074 * 210.00151 * 21 19 17 24 24 H 1.48500 * 109.47298 * 330.00263 * 21 19 17 25 25 C 1.38081 * 119.96592 * 90.00431 * 11 10 9 26 26 H 1.09004 * 109.46903 * 59.99858 * 1 2 3 27 27 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46942 * 300.00459 * 1 2 3 29 29 H 1.08991 * 109.47537 * 239.99914 * 2 1 3 30 30 H 1.08998 * 109.47060 * 119.99766 * 2 1 3 31 31 H 1.09004 * 109.47485 * 263.36530 * 4 3 2 32 32 H 1.09009 * 109.46704 * 23.35977 * 4 3 2 33 33 H 1.08993 * 109.47131 * 143.35909 * 4 3 2 34 34 H 1.09008 * 109.47016 * 204.93223 * 6 5 3 35 35 H 1.09002 * 109.46971 * 324.92287 * 6 5 3 36 36 H 1.08995 * 109.47499 * 84.92770 * 6 5 3 37 37 H 0.96996 * 119.99614 * 0.02562 * 9 7 5 38 38 H 1.09003 * 109.46841 * 59.99984 * 10 9 7 39 39 H 1.08997 * 109.47040 * 300.00491 * 10 9 7 40 40 H 1.07999 * 119.93248 * 359.97438 * 12 11 10 41 41 H 1.08003 * 119.96653 * 179.97438 * 13 12 11 42 42 H 1.07997 * 120.03745 * 180.31613 * 14 13 12 43 43 H 0.96999 * 120.00076 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.03492 * 0.03982 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2697 2.1361 -1.3050 5 6 2.2663 2.0434 1.1517 6 6 1.8712 1.3942 2.4530 7 6 2.9106 3.3658 1.1553 8 8 3.3321 3.8396 0.1176 9 7 3.0338 4.0523 2.3086 10 6 3.6761 5.3690 2.3122 11 6 3.6872 5.9185 3.7154 12 6 2.6296 6.6889 4.1641 13 6 2.6363 7.1954 5.4508 14 6 3.6968 6.9277 6.2943 15 6 4.7627 6.1595 5.8450 16 8 5.8092 5.8998 6.6697 17 6 5.7866 6.4773 7.8878 18 1 4.9229 7.0455 8.2001 19 6 6.8722 6.3417 8.7396 20 7 6.8500 6.9047 9.9284 21 14 8.3659 5.3582 8.1997 22 1 9.3302 6.2576 7.5168 23 1 9.0138 4.7492 9.3890 24 1 7.9409 4.2861 7.2642 25 6 4.7530 5.6522 4.5519 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3242 2.0651 -1.5718 32 1 1.6653 1.6758 -2.0867 33 1 1.9911 3.1847 -1.2004 34 1 1.7174 2.1628 3.2106 35 1 0.9477 0.8323 2.3131 36 1 2.6624 0.7181 2.7768 37 1 2.6979 3.6742 3.1362 38 1 3.1221 6.0453 1.6611 39 1 4.7002 5.2747 1.9511 40 1 1.7972 6.8959 3.5078 41 1 1.8093 7.7969 5.7981 42 1 3.6991 7.3192 7.3008 43 1 7.6093 6.8095 10.5244 44 1 5.5786 5.0510 4.2009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116508869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:01 Heat of formation + Delta-G solvation = -54.572075 kcal Electronic energy + Delta-G solvation = -23780.682834 eV Core-core repulsion = 20276.934310 eV Total energy + Delta-G solvation = -3503.748524 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25380 -40.77833 -38.70425 -37.58583 -35.85769 -34.46949 -32.94526 -31.86266 -31.05752 -30.62211 -27.58183 -26.95997 -25.85179 -24.73594 -23.35596 -22.41474 -21.83197 -19.95882 -19.52314 -18.69669 -17.34235 -17.03573 -16.87596 -16.77162 -16.25487 -15.77808 -15.75366 -15.51643 -15.28512 -15.00431 -14.59457 -14.40833 -14.24177 -14.07977 -13.86308 -13.81729 -13.46705 -13.35094 -13.12196 -13.07141 -12.81041 -12.59486 -12.48306 -12.45858 -12.37837 -12.20784 -11.95435 -11.68578 -11.33252 -10.93763 -10.63131 -10.16854 -9.80292 -9.61604 -9.14225 -8.51372 -6.24213 0.33254 0.40157 0.62700 1.30809 1.34191 1.50521 2.24842 2.26413 2.30828 2.78922 2.97542 3.13715 3.69528 3.79091 3.89714 4.03762 4.07854 4.25057 4.25361 4.38968 4.46195 4.47432 4.54506 4.64006 4.67886 4.73338 4.76336 4.79514 4.90367 4.91053 5.00267 5.11394 5.16579 5.17719 5.21169 5.35174 5.39752 5.44163 5.60980 5.61888 5.66838 5.72349 5.74435 5.87401 6.17312 6.58194 6.83118 7.24401 7.56683 8.60000 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002786 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.379938 B =10047.270699 C =10542.076621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.032 4.032 4 C -0.117 4.117 5 C -0.214 4.214 6 C -0.113 4.113 7 C 0.544 3.456 8 O -0.576 6.576 9 N -0.715 5.715 10 C 0.174 3.826 11 C -0.061 4.061 12 C -0.160 4.160 13 C -0.072 4.072 14 C -0.228 4.228 15 C 0.121 3.879 16 O -0.244 6.244 17 C -0.399 4.399 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.921 5.921 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.171 4.171 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.409 0.591 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.285 0.715 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.509 -12.704 -19.032 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.034 4.034 4 C -0.174 4.174 5 C -0.217 4.217 6 C -0.169 4.169 7 C 0.336 3.664 8 O -0.458 6.458 9 N -0.367 5.367 10 C 0.051 3.949 11 C -0.062 4.062 12 C -0.179 4.179 13 C -0.090 4.090 14 C -0.248 4.248 15 C 0.072 3.928 16 O -0.152 6.152 17 C -0.475 4.475 18 H 0.102 0.898 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.191 4.191 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.907 -12.447 -19.570 26.542 hybrid contribution 0.778 0.200 1.060 1.330 sum -12.129 -12.247 -18.510 25.293 Atomic orbital electron populations 1.21718 0.93370 1.02916 1.02312 1.20810 0.97252 0.90811 1.04266 1.22634 0.90719 0.95859 0.94146 1.21013 1.01811 1.00264 0.94268 1.21266 1.07737 0.94974 0.97710 1.20836 1.02645 1.00757 0.92680 1.18835 0.79027 0.85748 0.82823 1.90741 1.51211 1.71406 1.32468 1.46026 1.60649 1.19120 1.10922 1.20028 0.98552 0.84089 0.92223 1.19473 0.93857 0.98357 0.94482 1.21025 0.99350 1.01214 0.96310 1.21145 0.96817 0.97689 0.93375 1.21407 0.96561 1.05122 1.01681 1.19558 0.87875 0.94709 0.90695 1.83523 1.41079 1.65317 1.25269 1.20711 1.05222 1.32495 0.89083 0.89817 1.25239 1.00981 0.97940 0.94517 1.69719 1.33494 1.44524 1.08472 0.85260 0.78113 0.79291 0.78321 1.19288 1.19182 1.18749 1.20256 1.01418 1.06192 0.91191 0.92533 0.90685 0.92411 0.89511 0.89688 0.91638 0.90689 0.91720 0.91662 0.89333 0.90712 0.75331 0.89712 0.91524 0.83438 0.83721 0.87057 0.90553 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.73 71.98 0.70 -0.62 16 2 C -0.09 -1.05 5.38 29.85 0.16 -0.89 16 3 C -0.03 -0.55 5.35 -17.62 -0.09 -0.65 16 4 C -0.12 -2.26 8.44 71.24 0.60 -1.66 16 5 C -0.21 -4.21 5.99 -18.70 -0.11 -4.32 16 6 C -0.11 -1.62 8.67 71.24 0.62 -1.01 16 7 C 0.54 13.96 7.59 86.57 0.66 14.62 16 8 O -0.58 -18.09 13.30 -4.07 -0.05 -18.15 16 9 N -0.71 -17.02 5.51 -470.45 -2.59 -19.61 16 10 C 0.17 4.50 5.80 85.63 0.50 5.00 16 11 C -0.06 -1.81 5.25 -19.88 -0.10 -1.91 16 12 C -0.16 -4.40 9.70 22.30 0.22 -4.19 16 13 C -0.07 -2.29 10.04 22.25 0.22 -2.06 16 14 C -0.23 -9.50 9.17 22.39 0.21 -9.30 16 15 C 0.12 5.44 6.65 22.58 0.15 5.59 16 16 O -0.24 -13.01 8.59 -22.70 -0.19 -13.20 16 17 C -0.40 -23.06 9.94 67.92 0.68 -22.39 16 18 H 0.08 5.04 5.43 -2.91 -0.02 5.02 16 19 C 0.01 0.68 5.49 84.83 0.47 1.15 16 20 N -0.92 -54.42 13.96 21.61 0.30 -54.12 16 21 Si 0.97 45.10 28.62 68.60 1.96 47.06 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 25 C -0.17 -6.34 9.65 22.39 0.22 -6.12 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.55 6.75 -2.39 -0.02 0.54 16 29 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.08 0.84 6.99 -2.39 -0.02 0.83 16 31 H 0.07 1.42 7.99 -2.38 -0.02 1.40 16 32 H 0.07 1.06 8.08 -2.38 -0.02 1.04 16 33 H 0.06 1.55 6.25 -2.39 -0.01 1.54 16 34 H 0.06 0.93 6.28 -2.38 -0.01 0.91 16 35 H 0.09 0.97 5.74 -2.39 -0.01 0.96 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.41 8.64 6.39 -92.71 -0.59 8.04 16 38 H 0.08 2.05 8.09 -2.39 -0.02 2.03 16 39 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 40 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 41 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.11 5.12 5.62 -2.91 -0.02 5.10 16 43 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -67.86 360.86 4.93 -62.94 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.42 Total: 23.83 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 5.08 Total: -28.75 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -2.29 Total: -73.72 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.25 Total: -31.35 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.96 Total: 47.06 kcal Total: -67.86 4.93 -62.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116508869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.364 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds