Wall clock time and date at job start Tue Mar 31 2020 08:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47126 * 2 1 4 4 C 1.57062 * 116.37127 * 177.98465 * 3 2 1 5 5 C 1.57185 * 93.72631 * 181.71139 * 4 3 2 6 6 H 1.09010 * 116.80362 * 182.58627 * 5 4 3 7 7 C 1.56104 * 98.96347 * 309.35988 * 5 4 3 8 8 O 1.44108 * 105.40231 * 32.17269 * 7 5 4 9 9 N 1.49790 * 100.91673 * 55.35786 * 5 4 3 10 10 C 1.46906 * 110.99739 * 202.45398 * 9 5 4 11 11 C 1.50703 * 109.46783 * 194.04512 * 10 9 5 12 12 C 1.38305 * 119.93045 * 269.72571 * 11 10 9 13 13 C 1.38097 * 120.06575 * 179.72964 * 12 11 10 14 14 C 1.38880 * 119.93251 * 0.54629 * 13 12 11 15 15 O 1.35745 * 120.07098 * 179.75019 * 14 13 12 16 16 C 1.34832 * 116.99875 * 185.86204 * 15 14 13 17 17 H 1.07993 * 120.00253 * 5.43467 * 16 15 14 18 18 C 1.38656 * 119.99720 * 185.43336 * 16 15 14 19 19 N 1.31551 * 120.00349 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47067 * 89.99907 * 20 18 16 22 22 H 1.48496 * 109.46953 * 209.99740 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99750 * 20 18 16 24 24 C 1.38884 * 119.85896 * 359.72796 * 14 13 12 25 25 C 1.38092 * 119.93334 * 0.02562 * 24 14 13 26 26 C 1.48336 * 105.66337 * 322.87089 * 9 5 4 27 27 H 1.08994 * 109.47592 * 60.00139 * 1 2 3 28 28 H 1.09000 * 109.46862 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47315 * 299.99703 * 1 2 3 30 30 H 1.09003 * 109.47315 * 240.00297 * 2 1 3 31 31 H 1.09004 * 109.47592 * 119.99773 * 2 1 3 32 32 H 1.09000 * 112.45123 * 297.87914 * 4 3 2 33 33 H 1.09002 * 112.45128 * 65.45326 * 4 3 2 34 34 H 1.09000 * 110.25822 * 151.15756 * 7 5 4 35 35 H 1.09001 * 110.25923 * 273.09528 * 7 5 4 36 36 H 1.08995 * 109.47212 * 314.05062 * 10 9 5 37 37 H 1.08997 * 109.47124 * 74.04984 * 10 9 5 38 38 H 1.07999 * 119.96608 * 0.02562 * 12 11 10 39 39 H 1.07997 * 120.03481 * 180.27584 * 13 12 11 40 40 H 0.97000 * 120.00486 * 179.97438 * 19 18 16 41 41 H 1.08006 * 120.03387 * 180.02562 * 24 14 13 42 42 H 1.08001 * 119.97204 * 180.02562 * 25 24 14 43 43 H 1.08999 * 110.33191 * 121.38654 * 26 9 5 44 44 H 1.09003 * 110.33804 * 243.52059 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5984 1.6315 0.0495 5 6 3.5103 3.2007 0.0750 6 1 4.4540 3.7462 0.0688 7 6 2.5559 3.4105 -1.1424 8 8 1.6906 2.2582 -1.1534 9 7 2.6242 3.4157 1.2635 10 6 1.9637 4.7263 1.1974 11 6 1.3662 5.0560 2.5410 12 6 0.0670 4.6796 2.8296 13 6 -0.4814 4.9753 4.0620 14 6 0.2691 5.6613 5.0079 15 8 -0.2689 5.9579 6.2184 16 6 0.4678 6.7292 7.0433 17 1 1.3987 7.1536 6.6977 18 6 0.0300 6.9773 8.3353 19 7 -1.1043 6.4607 8.7562 20 14 1.0502 8.0464 9.4779 21 1 0.6354 9.4647 9.3305 22 1 0.8387 7.6123 10.8822 23 1 2.4875 7.9123 9.1295 24 6 1.5716 6.0428 4.7130 25 6 2.1161 5.7397 3.4807 26 6 1.6290 2.3164 1.2252 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.0384 1.2245 0.9599 33 1 4.0920 1.2554 -0.8466 34 1 1.9708 4.3207 -1.0108 35 1 3.1300 3.4621 -2.0675 36 1 2.6949 5.4884 0.9279 37 1 1.1747 4.6980 0.4460 38 1 -0.5176 4.1498 2.0921 39 1 -1.4945 4.6773 4.2884 40 1 -1.4104 6.6340 9.6601 41 1 2.1580 6.5760 5.4467 42 1 3.1290 6.0357 3.2508 43 1 1.6775 1.7296 2.1424 44 1 0.6255 2.7185 1.0862 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137121438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:11 Heat of formation + Delta-G solvation = -14.680739 kcal Electronic energy + Delta-G solvation = -24820.118225 eV Core-core repulsion = 21318.099520 eV Total energy + Delta-G solvation = -3502.018706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41746 -38.97524 -36.82291 -34.94782 -34.03648 -32.35773 -31.31000 -30.18113 -29.13675 -28.59237 -25.81683 -24.98020 -24.36296 -23.09259 -21.90065 -21.07087 -20.46159 -19.09859 -17.98216 -17.03011 -16.94226 -16.47937 -15.66280 -14.91887 -14.62404 -14.55359 -14.26271 -13.95929 -13.71671 -13.52803 -13.37689 -13.21942 -12.88988 -12.75792 -12.66776 -12.27330 -12.21825 -12.06164 -11.77160 -11.65397 -11.60172 -11.21884 -11.15050 -11.04191 -10.89270 -10.74010 -10.56939 -10.50257 -10.39095 -9.61581 -9.33810 -8.81568 -8.25843 -8.14189 -7.15583 -6.43983 -4.02622 2.24597 2.30426 3.13293 3.14239 3.19121 3.41076 3.89322 3.97710 4.09208 4.19755 4.42600 4.59417 4.70178 4.99519 5.05633 5.09917 5.12483 5.23353 5.24196 5.26499 5.35785 5.40285 5.47903 5.56896 5.59483 5.67705 5.71247 5.75776 5.79463 5.80242 5.88113 5.94777 5.99219 6.13084 6.24119 6.42521 6.57830 6.69757 6.73590 6.95092 6.99214 7.10798 7.27167 7.43258 7.46423 7.85334 8.01228 9.01821 9.72551 10.74177 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.002982 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.678460 B = 9387.426427 C = 9857.640598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C 0.078 3.922 4 C -0.150 4.150 5 C 0.027 3.973 6 H 0.131 0.869 7 C 0.010 3.990 8 O -0.374 6.374 9 N -0.506 5.506 10 C 0.100 3.900 11 C -0.176 4.176 12 C -0.067 4.067 13 C -0.193 4.193 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.234 4.234 25 C -0.051 4.051 26 C 0.023 3.977 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 -8.959 -17.780 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 C 0.038 3.962 4 C -0.188 4.188 5 C -0.081 4.081 6 H 0.149 0.851 7 C -0.068 4.068 8 O -0.294 6.294 9 N -0.229 5.229 10 C -0.027 4.027 11 C -0.177 4.177 12 C -0.086 4.086 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.253 4.253 25 C -0.070 4.070 26 C -0.105 4.105 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.045 -9.037 -17.098 20.946 hybrid contribution 0.252 0.792 -0.002 0.831 sum 8.297 -8.245 -17.100 20.718 Atomic orbital electron populations 1.21726 0.94752 1.01752 1.02727 1.21045 0.96952 0.91251 1.02956 1.24317 0.93420 0.92213 0.86245 1.24274 0.96231 0.95070 1.03204 1.25087 0.97148 0.96736 0.89096 0.85138 1.24256 0.93390 0.89857 0.99306 1.89020 1.58466 1.34640 1.47278 1.65189 1.17665 1.02299 1.37780 1.21063 0.96713 0.90221 0.94687 1.19010 0.94979 1.07381 0.96342 1.20462 0.94432 0.98300 0.95357 1.20151 1.00471 1.07122 0.93513 1.19397 0.91290 0.92159 0.86987 1.83989 1.42750 1.60648 1.20821 1.21316 1.05798 1.26325 0.93275 0.89118 1.25285 0.96763 0.97972 0.96506 1.70035 1.19550 1.42065 1.18167 0.85721 0.79402 0.79351 0.79012 1.19894 1.20266 1.19190 1.21156 0.96489 1.09163 0.98530 1.20538 0.97721 0.96119 0.92579 1.23871 0.95565 0.93208 0.97871 0.92158 0.92477 0.92223 0.90972 0.89854 0.88790 0.89849 0.90392 0.91233 0.90896 0.93946 0.87684 0.86672 0.92039 0.85630 0.87633 0.89729 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.71 37.15 0.36 -1.02 16 2 C -0.08 -0.74 6.04 -26.73 -0.16 -0.90 16 3 C 0.08 0.83 1.42 -86.81 -0.12 0.71 16 4 C -0.15 -1.42 6.57 -22.25 -0.15 -1.57 16 5 C 0.03 0.28 5.28 -62.16 -0.33 -0.05 16 6 H 0.13 1.12 8.14 -51.92 -0.42 0.69 16 7 C 0.01 0.10 6.80 38.82 0.26 0.37 16 8 O -0.37 -4.63 11.08 -35.23 -0.39 -5.02 16 9 N -0.51 -6.58 5.23 -217.95 -1.14 -7.72 16 10 C 0.10 1.38 3.89 -4.97 -0.02 1.36 16 11 C -0.18 -3.03 5.23 -104.57 -0.55 -3.58 16 12 C -0.07 -1.21 9.03 -39.61 -0.36 -1.57 16 13 C -0.19 -4.15 9.99 -39.40 -0.39 -4.54 16 14 C 0.16 3.80 6.65 -39.10 -0.26 3.54 16 15 O -0.18 -5.16 9.76 0.06 0.00 -5.16 16 16 C -0.39 -11.01 9.44 30.89 0.29 -10.72 16 17 H 0.09 2.37 5.30 -52.49 -0.28 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 20 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.23 -5.16 9.13 -39.40 -0.36 -5.52 16 25 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 26 C 0.02 0.29 4.71 -1.43 -0.01 0.28 16 27 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.58 7.63 -51.93 -0.40 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.85 5.52 -51.93 -0.29 0.57 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 37 H 0.04 0.58 6.00 -51.93 -0.31 0.26 16 38 H 0.11 1.66 7.11 -52.49 -0.37 1.28 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.13 2.78 5.72 -52.48 -0.30 2.48 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 0.95 6.05 -51.93 -0.31 0.64 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -31.18 348.66 -9.26 -40.44 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.46 Total: 4.87 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.27 Total: -23.55 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: -0.38 Total: -32.43 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.39 Total: -10.18 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.18 -9.26 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137121438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.761 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds