Wall clock time and date at job start Tue Mar 31 2020 08:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47126 * 2 1 4 4 C 1.57062 * 116.37127 * 177.98465 * 3 2 1 5 5 C 1.57185 * 93.72631 * 181.71139 * 4 3 2 6 6 H 1.09010 * 116.80362 * 182.58627 * 5 4 3 7 7 C 1.56104 * 98.96347 * 309.35988 * 5 4 3 8 8 O 1.44108 * 105.40231 * 32.17269 * 7 5 4 9 9 N 1.49790 * 100.91673 * 55.35786 * 5 4 3 10 10 C 1.46906 * 110.99739 * 202.45398 * 9 5 4 11 11 C 1.50703 * 109.46783 * 194.04512 * 10 9 5 12 12 C 1.38305 * 119.93045 * 269.72571 * 11 10 9 13 13 C 1.38097 * 120.06575 * 179.72964 * 12 11 10 14 14 C 1.38880 * 119.93251 * 0.54629 * 13 12 11 15 15 O 1.35745 * 120.07098 * 179.75019 * 14 13 12 16 16 C 1.34832 * 116.99875 * 185.86204 * 15 14 13 17 17 H 1.07993 * 120.00253 * 5.43467 * 16 15 14 18 18 C 1.38656 * 119.99720 * 185.43336 * 16 15 14 19 19 N 1.31551 * 120.00349 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47067 * 89.99907 * 20 18 16 22 22 H 1.48496 * 109.46953 * 209.99740 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99750 * 20 18 16 24 24 C 1.38884 * 119.85896 * 359.72796 * 14 13 12 25 25 C 1.38092 * 119.93334 * 0.02562 * 24 14 13 26 26 C 1.48336 * 105.66337 * 322.87089 * 9 5 4 27 27 H 1.08994 * 109.47592 * 60.00139 * 1 2 3 28 28 H 1.09000 * 109.46862 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47315 * 299.99703 * 1 2 3 30 30 H 1.09003 * 109.47315 * 240.00297 * 2 1 3 31 31 H 1.09004 * 109.47592 * 119.99773 * 2 1 3 32 32 H 1.09000 * 112.45123 * 297.87914 * 4 3 2 33 33 H 1.09002 * 112.45128 * 65.45326 * 4 3 2 34 34 H 1.09000 * 110.25822 * 151.15756 * 7 5 4 35 35 H 1.09001 * 110.25923 * 273.09528 * 7 5 4 36 36 H 1.08995 * 109.47212 * 314.05062 * 10 9 5 37 37 H 1.08997 * 109.47124 * 74.04984 * 10 9 5 38 38 H 1.07999 * 119.96608 * 0.02562 * 12 11 10 39 39 H 1.07997 * 120.03481 * 180.27584 * 13 12 11 40 40 H 0.97000 * 120.00486 * 179.97438 * 19 18 16 41 41 H 1.08006 * 120.03387 * 180.02562 * 24 14 13 42 42 H 1.08001 * 119.97204 * 180.02562 * 25 24 14 43 43 H 1.08999 * 110.33191 * 121.38654 * 26 9 5 44 44 H 1.09003 * 110.33804 * 243.52059 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5984 1.6315 0.0495 5 6 3.5103 3.2007 0.0750 6 1 4.4540 3.7462 0.0688 7 6 2.5559 3.4105 -1.1424 8 8 1.6906 2.2582 -1.1534 9 7 2.6242 3.4157 1.2635 10 6 1.9637 4.7263 1.1974 11 6 1.3662 5.0560 2.5410 12 6 0.0670 4.6796 2.8296 13 6 -0.4814 4.9753 4.0620 14 6 0.2691 5.6613 5.0079 15 8 -0.2689 5.9579 6.2184 16 6 0.4678 6.7292 7.0433 17 1 1.3987 7.1536 6.6977 18 6 0.0300 6.9773 8.3353 19 7 -1.1043 6.4607 8.7562 20 14 1.0502 8.0464 9.4779 21 1 0.6354 9.4647 9.3305 22 1 0.8387 7.6123 10.8822 23 1 2.4875 7.9123 9.1295 24 6 1.5716 6.0428 4.7130 25 6 2.1161 5.7397 3.4807 26 6 1.6290 2.3164 1.2252 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.0384 1.2245 0.9599 33 1 4.0920 1.2554 -0.8466 34 1 1.9708 4.3207 -1.0108 35 1 3.1300 3.4621 -2.0675 36 1 2.6949 5.4884 0.9279 37 1 1.1747 4.6980 0.4460 38 1 -0.5176 4.1498 2.0921 39 1 -1.4945 4.6773 4.2884 40 1 -1.4104 6.6340 9.6601 41 1 2.1580 6.5760 5.4467 42 1 3.1290 6.0357 3.2508 43 1 1.6775 1.7296 2.1424 44 1 0.6255 2.7185 1.0862 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137121438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:08 Heat of formation + Delta-G solvation = -35.014825 kcal Electronic energy + Delta-G solvation = -24820.999977 eV Core-core repulsion = 21318.099520 eV Total energy + Delta-G solvation = -3502.900458 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -42.29931 -40.72574 -38.49139 -36.05808 -34.79201 -34.31026 -32.51175 -31.82119 -30.07828 -29.78230 -27.56254 -26.26779 -25.35780 -24.06127 -23.55715 -22.04771 -21.82601 -19.98951 -19.86113 -18.81117 -17.90771 -17.34620 -16.80464 -16.34708 -16.29105 -15.84884 -15.62343 -15.42560 -15.11556 -14.72342 -14.53366 -14.38237 -14.25087 -13.91790 -13.74670 -13.53718 -13.52070 -13.14374 -12.90321 -12.82907 -12.69298 -12.53559 -12.37786 -12.21979 -12.13467 -12.00698 -11.95494 -11.68193 -11.61370 -11.19347 -10.79393 -10.46952 -9.78164 -9.25138 -8.90482 -8.47328 -6.15507 0.59070 0.67033 1.34979 1.44316 1.52736 2.17862 2.58916 2.75077 3.00524 3.24709 3.33654 3.38959 3.49851 3.63472 3.86404 3.96924 4.04596 4.17524 4.24094 4.33386 4.35552 4.41743 4.49369 4.54396 4.55915 4.63596 4.72862 4.77119 4.82669 4.90259 4.93882 4.97279 5.05051 5.07743 5.12623 5.14248 5.18081 5.28302 5.39694 5.53428 5.65871 5.72201 5.81109 5.87343 6.02189 6.04039 6.22276 6.97374 7.78397 8.76126 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.002982 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.678460 B = 9387.426427 C = 9857.640598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C 0.078 3.922 4 C -0.143 4.143 5 C 0.032 3.968 6 H 0.154 0.846 7 C 0.007 3.993 8 O -0.394 6.394 9 N -0.520 5.520 10 C 0.104 3.896 11 C -0.150 4.150 12 C -0.061 4.061 13 C -0.205 4.205 14 C 0.115 3.885 15 O -0.233 6.233 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.241 4.241 25 C -0.049 4.049 26 C 0.020 3.980 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.073 0.927 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.176 -9.291 -20.297 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C 0.039 3.961 4 C -0.181 4.181 5 C -0.075 4.075 6 H 0.171 0.829 7 C -0.071 4.071 8 O -0.315 6.315 9 N -0.244 5.244 10 C -0.023 4.023 11 C -0.151 4.151 12 C -0.079 4.079 13 C -0.224 4.224 14 C 0.064 3.936 15 O -0.140 6.140 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.176 1.176 24 C -0.260 4.260 25 C -0.067 4.067 26 C -0.108 4.108 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.092 0.908 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.960 -9.386 -19.681 24.404 hybrid contribution -0.602 0.748 0.418 1.047 sum 10.358 -8.637 -19.263 23.515 Atomic orbital electron populations 1.21705 0.95257 1.02356 1.01498 1.21117 0.96515 0.90450 1.04105 1.24433 0.94483 0.92434 0.84751 1.24278 0.95133 0.94542 1.04120 1.25283 0.97226 0.97574 0.87466 0.82861 1.24353 0.93272 0.89101 1.00349 1.89011 1.59368 1.35413 1.47675 1.65079 1.17824 1.01615 1.39850 1.21038 0.97581 0.91585 0.92057 1.19533 0.94138 1.03949 0.97511 1.20774 0.95233 0.97530 0.94384 1.20376 1.00457 1.07133 0.94425 1.19908 0.92999 0.94112 0.86547 1.83948 1.44489 1.62836 1.22736 1.21812 1.06244 1.26960 0.93913 0.88156 1.26603 0.98060 0.99424 0.97980 1.70184 1.22032 1.44850 1.18909 0.84584 0.78038 0.77284 0.76288 1.18785 1.19578 1.17570 1.21262 0.95611 1.09207 0.99955 1.20887 0.99228 0.95417 0.91193 1.23843 0.94872 0.93594 0.98536 0.93326 0.91017 0.93436 0.89757 0.88692 0.88652 0.88082 0.90942 0.89318 0.88635 0.93317 0.84973 0.87181 0.91834 0.86354 0.84258 0.90837 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.71 71.98 0.70 -1.83 16 2 C -0.08 -1.29 6.04 30.59 0.18 -1.10 16 3 C 0.08 1.48 1.42 -8.33 -0.01 1.46 16 4 C -0.14 -2.18 6.57 33.49 0.22 -1.96 16 5 C 0.03 0.52 5.28 46.90 0.25 0.77 16 6 H 0.15 1.83 8.14 -2.38 -0.02 1.81 16 7 C 0.01 0.12 6.80 73.06 0.50 0.62 16 8 O -0.39 -8.69 11.08 -148.98 -1.65 -10.34 16 9 N -0.52 -11.83 5.23 -843.45 -4.41 -16.24 16 10 C 0.10 2.50 3.89 85.56 0.33 2.84 16 11 C -0.15 -4.83 5.23 -19.83 -0.10 -4.93 16 12 C -0.06 -2.15 9.03 22.25 0.20 -1.94 16 13 C -0.20 -9.05 9.99 22.39 0.22 -8.83 16 14 C 0.11 5.86 6.65 22.58 0.15 6.01 16 15 O -0.23 -14.36 9.76 -22.71 -0.22 -14.59 16 16 C -0.41 -24.45 9.44 67.92 0.64 -23.81 16 17 H 0.10 5.45 5.30 -2.91 -0.02 5.43 16 18 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 19 N -0.92 -57.29 13.67 21.61 0.30 -56.99 16 20 Si 1.02 43.25 29.55 68.60 2.03 45.27 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 24 C -0.24 -10.73 9.13 22.39 0.20 -10.53 16 25 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 26 C 0.02 0.46 4.71 87.07 0.41 0.87 16 27 H 0.05 0.92 8.11 -2.39 -0.02 0.90 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.89 7.63 -2.39 -0.02 0.87 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.33 5.52 -2.39 -0.01 1.32 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.93 7.98 -2.39 -0.02 1.91 16 37 H 0.05 1.15 6.00 -2.39 -0.01 1.14 16 38 H 0.13 3.95 7.11 -2.91 -0.02 3.93 16 39 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.12 5.35 5.72 -2.91 -0.02 5.34 16 42 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.41 6.05 -2.39 -0.01 1.40 16 Total: -1.00 -72.20 348.66 1.62 -70.58 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.00 Total: 27.05 kcal Atomic # 6 Polarization: -49.33 SS G_CDS: 4.58 Total: -44.75 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -4.11 Total: -73.23 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.87 Total: -24.93 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -72.20 1.62 -70.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137121438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.567 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds