Wall clock time and date at job start Tue Mar 31 2020 08:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 110.50910 * 2 1 4 4 O 1.43984 * 110.57215 * 237.08238 * 2 1 3 5 5 C 1.36630 * 105.46870 * 268.57720 * 4 2 1 6 6 C 1.38534 * 131.43875 * 163.02231 * 5 4 2 7 7 C 1.38194 * 120.12409 * 180.16974 * 6 5 4 8 8 C 1.38865 * 120.05961 * 359.48685 * 7 6 5 9 9 N 1.39925 * 120.00432 * 180.27836 * 8 7 6 10 10 C 1.46505 * 119.99954 * 0.02562 * 9 8 7 11 11 H 1.08998 * 109.41273 * 324.85274 * 10 9 8 12 12 C 1.52952 * 109.41567 * 84.64495 * 10 9 8 13 13 C 1.53234 * 109.40574 * 183.70412 * 12 10 9 14 14 C 1.51275 * 108.53446 * 305.37390 * 13 12 10 15 15 C 1.37871 * 120.84570 * 231.32372 * 14 13 12 16 16 N 1.31523 * 119.99899 * 180.02562 * 15 14 13 17 17 Si 1.86799 * 120.00348 * 0.02562 * 15 14 13 18 18 H 1.48495 * 109.46982 * 60.00180 * 17 15 14 19 19 H 1.48506 * 109.47278 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47355 * 300.00099 * 17 15 14 21 21 C 1.51262 * 118.30171 * 51.34652 * 14 13 12 22 22 C 1.52962 * 109.41111 * 204.99922 * 10 9 8 23 23 C 1.38814 * 119.99191 * 0.25534 * 8 7 6 24 24 C 1.38506 * 119.97200 * 0.02562 * 23 8 7 25 25 O 1.36516 * 131.45597 * 180.02562 * 24 23 8 26 26 H 1.08999 * 109.47195 * 297.94362 * 1 2 3 27 27 H 1.09005 * 109.47338 * 57.94214 * 1 2 3 28 28 H 1.08999 * 109.47377 * 177.94059 * 1 2 3 29 29 H 1.09002 * 109.46693 * 182.05854 * 3 2 1 30 30 H 1.09001 * 109.46852 * 302.05778 * 3 2 1 31 31 H 1.08996 * 109.46925 * 62.05956 * 3 2 1 32 32 H 1.08003 * 119.93974 * 359.90759 * 6 5 4 33 33 H 1.08002 * 119.97262 * 179.77109 * 7 6 5 34 34 H 0.97002 * 120.00132 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.48464 * 303.68608 * 12 10 9 36 36 H 1.09004 * 109.48231 * 63.72815 * 12 10 9 37 37 H 1.08997 * 109.62647 * 185.65843 * 13 12 10 38 38 H 1.08999 * 109.62684 * 65.08675 * 13 12 10 39 39 H 0.96998 * 120.00333 * 179.97438 * 16 15 14 40 40 H 1.08998 * 109.62962 * 188.93338 * 21 14 13 41 41 H 1.09003 * 109.63046 * 68.36790 * 21 14 13 42 42 H 1.09003 * 109.48458 * 296.26996 * 22 10 9 43 43 H 1.09001 * 109.48104 * 56.29947 * 22 10 9 44 44 H 1.07995 * 120.01291 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0660 1.4331 0.0000 4 8 2.0359 -0.7326 -1.1316 5 6 2.1946 -2.0168 -0.6930 6 6 2.3474 -3.2087 -1.3822 7 6 2.4892 -4.3966 -0.6904 8 6 2.4894 -4.3971 0.6982 9 7 2.6388 -5.5999 1.3975 10 6 2.7956 -6.8587 0.6646 11 1 2.1954 -6.8257 -0.2446 12 6 4.2670 -7.0514 0.2941 13 6 4.4171 -8.3204 -0.5516 14 6 3.8084 -9.4788 0.2073 15 6 4.5171 -10.6449 0.4048 16 7 3.9715 -11.6419 1.0668 17 14 6.2521 -10.8088 -0.2677 18 1 7.1157 -9.7587 0.3295 19 1 6.7922 -12.1485 0.0773 20 1 6.2279 -10.6494 -1.7439 21 6 2.4024 -9.3253 0.7435 22 6 2.3254 -8.0199 1.5423 23 6 2.3418 -3.2042 1.3926 24 6 2.1939 -2.0141 0.6997 25 8 2.0353 -0.7294 1.1336 26 1 -0.3633 0.4816 0.9078 27 1 -0.3634 0.5455 -0.8710 28 1 -0.3634 -1.0270 -0.0369 29 1 3.1553 1.4135 -0.0369 30 1 1.6824 1.9645 -0.8710 31 1 1.7423 1.9420 0.9078 32 1 2.3516 -3.2102 -2.4622 33 1 2.6045 -5.3249 -1.2302 34 1 2.6386 -5.6002 2.3675 35 1 4.6138 -6.1905 -0.2775 36 1 4.8611 -7.1479 1.2029 37 1 5.4738 -8.5165 -0.7333 38 1 3.8973 -8.1913 -1.5010 39 1 4.4699 -12.4624 1.2054 40 1 2.1646 -10.1670 1.3939 41 1 1.6961 -9.2892 -0.0859 42 1 2.9655 -8.0935 2.4215 43 1 1.2961 -7.8452 1.8555 44 1 2.3415 -3.2043 2.4725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:47 Heat of formation + Delta-G solvation = -52.723339 kcal Electronic energy + Delta-G solvation = -24753.979115 eV Core-core repulsion = 21250.310759 eV Total energy + Delta-G solvation = -3503.668357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14737 -38.88148 -36.85294 -36.07477 -34.13724 -32.66725 -31.68880 -30.13172 -29.78128 -28.15919 -27.71370 -26.39034 -23.04826 -22.60110 -21.96145 -21.42272 -21.31945 -19.46227 -18.01789 -17.43183 -16.77495 -16.39397 -15.78825 -15.22023 -14.85784 -14.62995 -14.46191 -13.79559 -13.64047 -13.52085 -13.16046 -13.13560 -12.88415 -12.68926 -12.57024 -12.53250 -12.47109 -12.35258 -12.09166 -12.06055 -11.62764 -11.26587 -11.02182 -10.96134 -10.73787 -10.63344 -10.20091 -10.02848 -9.79641 -9.30717 -9.02273 -8.70395 -8.52391 -8.40003 -6.92911 -6.15461 -4.06891 1.40162 1.59550 2.80179 3.26044 3.33209 3.34234 3.34742 3.80883 3.92118 4.34552 4.37334 4.41135 4.73216 5.00396 5.11885 5.13794 5.14761 5.28249 5.31762 5.40052 5.43012 5.58549 5.61844 5.75866 5.78081 5.81716 6.04717 6.08259 6.23685 6.31786 6.40938 6.45522 6.56991 6.58878 6.66985 6.80503 6.81290 6.96449 7.02109 7.30780 7.34440 7.56006 7.64028 7.68351 7.78005 8.06296 8.31827 8.90654 9.49246 10.94132 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.002920 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.527929 B = 9587.809170 C = 9901.980491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.256 3.744 3 C -0.144 4.144 4 O -0.305 6.305 5 C -0.048 4.048 6 C -0.047 4.047 7 C -0.193 4.193 8 C 0.244 3.756 9 N -0.734 5.734 10 C 0.159 3.841 11 H 0.071 0.929 12 C -0.120 4.120 13 C -0.009 4.009 14 C -0.492 4.492 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.274 1.274 21 C 0.013 3.987 22 C -0.114 4.114 23 C -0.192 4.192 24 C 0.081 3.919 25 O -0.305 6.305 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.396 0.604 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.019 0.981 39 H 0.265 0.735 40 H 0.060 0.940 41 H 0.006 0.994 42 H 0.054 0.946 43 H 0.036 0.964 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 20.629 -1.103 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.181 3.819 3 C -0.201 4.201 4 O -0.222 6.222 5 C -0.093 4.093 6 C -0.067 4.067 7 C -0.216 4.216 8 C 0.137 3.863 9 N -0.360 5.360 10 C 0.056 3.944 11 H 0.089 0.911 12 C -0.159 4.159 13 C -0.047 4.047 14 C -0.511 4.511 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.219 1.219 20 H -0.200 1.200 21 C -0.025 4.025 22 C -0.152 4.152 23 C -0.215 4.215 24 C 0.035 3.965 25 O -0.222 6.222 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.230 0.770 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.338 20.458 -1.139 21.173 hybrid contribution 0.975 -0.033 0.165 0.989 sum -4.363 20.425 -0.974 20.909 Atomic orbital electron populations 1.22536 0.93387 1.04270 1.03864 1.24328 0.93257 0.91694 0.72613 1.21891 1.03071 0.91250 1.03927 1.87373 1.82392 1.17335 1.35142 1.19411 1.12768 0.85720 0.91428 1.19765 0.99383 0.87811 0.99711 1.20536 1.10781 0.98049 0.92248 1.17415 0.91872 0.85761 0.91248 1.45307 1.78613 1.03911 1.08152 1.21042 0.96890 0.81358 0.95113 0.91096 1.22030 0.95270 0.98273 1.00363 1.19609 0.96398 0.93371 0.95365 1.20021 0.99524 0.97531 1.34007 1.24839 0.97873 0.95324 0.94549 1.69818 1.37809 1.04942 1.40115 0.86657 0.84832 0.76808 0.79790 1.19992 1.21865 1.19953 1.19338 0.95385 0.92514 0.95224 1.21912 0.97816 0.96594 0.98916 1.19247 1.14987 0.87668 0.99617 1.19325 1.00659 0.84957 0.91528 1.87365 1.81403 1.17295 1.36098 0.90059 0.89943 0.91121 0.90609 0.89633 0.89688 0.85279 0.84244 0.77020 0.94407 0.92785 0.95588 0.96259 0.92465 0.92103 0.97573 0.92747 0.94541 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.19 37.16 0.34 -1.36 16 2 C 0.26 2.97 1.61 -26.73 -0.04 2.93 16 3 C -0.14 -1.19 9.39 37.16 0.35 -0.84 16 4 O -0.30 -4.31 10.83 -46.12 -0.50 -4.81 16 5 C -0.05 -0.72 6.94 -39.09 -0.27 -0.99 16 6 C -0.05 -0.67 10.05 -39.49 -0.40 -1.06 16 7 C -0.19 -2.86 8.81 -39.37 -0.35 -3.21 16 8 C 0.24 3.67 6.63 -83.72 -0.56 3.11 16 9 N -0.73 -11.18 5.25 -52.18 -0.27 -11.45 16 10 C 0.16 2.82 2.05 -67.97 -0.14 2.69 16 11 H 0.07 1.27 6.49 -51.93 -0.34 0.94 16 12 C -0.12 -2.33 5.43 -26.64 -0.14 -2.47 16 13 C -0.01 -0.21 5.59 -27.48 -0.15 -0.36 16 14 C -0.49 -12.42 5.51 -98.93 -0.55 -12.97 16 15 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 16 N -0.89 -24.97 12.73 55.43 0.71 -24.27 16 17 Si 0.89 20.89 26.80 -169.99 -4.56 16.34 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 22 C -0.11 -2.22 5.40 -26.63 -0.14 -2.37 16 23 C -0.19 -2.77 9.91 -39.27 -0.39 -3.16 16 24 C 0.08 1.21 6.97 -39.10 -0.27 0.94 16 25 O -0.31 -4.31 10.81 -45.74 -0.49 -4.80 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.14 2.06 6.14 -52.49 -0.32 1.74 16 34 H 0.40 5.44 8.61 -40.82 -0.35 5.09 16 35 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 41 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -28.39 347.64 -9.52 -37.91 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.67 Total: 2.87 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -2.97 Total: -17.02 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.43 Total: -35.72 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.99 Total: -9.61 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.56 Total: 16.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.39 -9.52 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.813 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds