Wall clock time and date at job start Tue Mar 31 2020 08:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 110.50910 * 2 1 4 4 O 1.43984 * 110.57215 * 237.08238 * 2 1 3 5 5 C 1.36630 * 105.46870 * 268.57720 * 4 2 1 6 6 C 1.38534 * 131.43875 * 163.02231 * 5 4 2 7 7 C 1.38194 * 120.12409 * 180.16974 * 6 5 4 8 8 C 1.38865 * 120.05961 * 359.48685 * 7 6 5 9 9 N 1.39925 * 120.00432 * 180.27836 * 8 7 6 10 10 C 1.46505 * 119.99954 * 0.02562 * 9 8 7 11 11 H 1.08998 * 109.41273 * 324.85274 * 10 9 8 12 12 C 1.52952 * 109.41567 * 84.64495 * 10 9 8 13 13 C 1.53234 * 109.40574 * 183.70412 * 12 10 9 14 14 C 1.51275 * 108.53446 * 305.37390 * 13 12 10 15 15 C 1.37871 * 120.84570 * 231.32372 * 14 13 12 16 16 N 1.31523 * 119.99899 * 180.02562 * 15 14 13 17 17 Si 1.86799 * 120.00348 * 0.02562 * 15 14 13 18 18 H 1.48495 * 109.46982 * 60.00180 * 17 15 14 19 19 H 1.48506 * 109.47278 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47355 * 300.00099 * 17 15 14 21 21 C 1.51262 * 118.30171 * 51.34652 * 14 13 12 22 22 C 1.52962 * 109.41111 * 204.99922 * 10 9 8 23 23 C 1.38814 * 119.99191 * 0.25534 * 8 7 6 24 24 C 1.38506 * 119.97200 * 0.02562 * 23 8 7 25 25 O 1.36516 * 131.45597 * 180.02562 * 24 23 8 26 26 H 1.08999 * 109.47195 * 297.94362 * 1 2 3 27 27 H 1.09005 * 109.47338 * 57.94214 * 1 2 3 28 28 H 1.08999 * 109.47377 * 177.94059 * 1 2 3 29 29 H 1.09002 * 109.46693 * 182.05854 * 3 2 1 30 30 H 1.09001 * 109.46852 * 302.05778 * 3 2 1 31 31 H 1.08996 * 109.46925 * 62.05956 * 3 2 1 32 32 H 1.08003 * 119.93974 * 359.90759 * 6 5 4 33 33 H 1.08002 * 119.97262 * 179.77109 * 7 6 5 34 34 H 0.97002 * 120.00132 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.48464 * 303.68608 * 12 10 9 36 36 H 1.09004 * 109.48231 * 63.72815 * 12 10 9 37 37 H 1.08997 * 109.62647 * 185.65843 * 13 12 10 38 38 H 1.08999 * 109.62684 * 65.08675 * 13 12 10 39 39 H 0.96998 * 120.00333 * 179.97438 * 16 15 14 40 40 H 1.08998 * 109.62962 * 188.93338 * 21 14 13 41 41 H 1.09003 * 109.63046 * 68.36790 * 21 14 13 42 42 H 1.09003 * 109.48458 * 296.26996 * 22 10 9 43 43 H 1.09001 * 109.48104 * 56.29947 * 22 10 9 44 44 H 1.07995 * 120.01291 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0660 1.4331 0.0000 4 8 2.0359 -0.7326 -1.1316 5 6 2.1946 -2.0168 -0.6930 6 6 2.3474 -3.2087 -1.3822 7 6 2.4892 -4.3966 -0.6904 8 6 2.4894 -4.3971 0.6982 9 7 2.6388 -5.5999 1.3975 10 6 2.7956 -6.8587 0.6646 11 1 2.1954 -6.8257 -0.2446 12 6 4.2670 -7.0514 0.2941 13 6 4.4171 -8.3204 -0.5516 14 6 3.8084 -9.4788 0.2073 15 6 4.5171 -10.6449 0.4048 16 7 3.9715 -11.6419 1.0668 17 14 6.2521 -10.8088 -0.2677 18 1 7.1157 -9.7587 0.3295 19 1 6.7922 -12.1485 0.0773 20 1 6.2279 -10.6494 -1.7439 21 6 2.4024 -9.3253 0.7435 22 6 2.3254 -8.0199 1.5423 23 6 2.3418 -3.2042 1.3926 24 6 2.1939 -2.0141 0.6997 25 8 2.0353 -0.7294 1.1336 26 1 -0.3633 0.4816 0.9078 27 1 -0.3634 0.5455 -0.8710 28 1 -0.3634 -1.0270 -0.0369 29 1 3.1553 1.4135 -0.0369 30 1 1.6824 1.9645 -0.8710 31 1 1.7423 1.9420 0.9078 32 1 2.3516 -3.2102 -2.4622 33 1 2.6045 -5.3249 -1.2302 34 1 2.6386 -5.6002 2.3675 35 1 4.6138 -6.1905 -0.2775 36 1 4.8611 -7.1479 1.2029 37 1 5.4738 -8.5165 -0.7333 38 1 3.8973 -8.1913 -1.5010 39 1 4.4699 -12.4624 1.2054 40 1 2.1646 -10.1670 1.3939 41 1 1.6961 -9.2892 -0.0859 42 1 2.9655 -8.0935 2.4215 43 1 1.2961 -7.8452 1.8555 44 1 2.3415 -3.2043 2.4725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:42 Heat of formation + Delta-G solvation = -68.016905 kcal Electronic energy + Delta-G solvation = -24754.642294 eV Core-core repulsion = 21250.310759 eV Total energy + Delta-G solvation = -3504.331535 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -43.15282 -40.14154 -38.29167 -37.10845 -35.56509 -33.84699 -33.12386 -31.49680 -31.32157 -29.43953 -28.54309 -27.77465 -24.36794 -23.92008 -23.21393 -22.83046 -22.61251 -21.06195 -19.10155 -18.55876 -18.21832 -17.54537 -17.10344 -16.41467 -16.26799 -16.05989 -15.63869 -15.12694 -14.84275 -14.74746 -14.58599 -14.40232 -14.01766 -13.99950 -13.86170 -13.69073 -13.44167 -13.32846 -13.20852 -13.10582 -12.99365 -12.72662 -12.65460 -12.46152 -12.13682 -12.06013 -11.90313 -11.61584 -11.47838 -10.86552 -10.67948 -10.53639 -10.27598 -9.52265 -8.16664 -8.09909 -6.09713 0.29333 0.47369 1.39976 1.41670 1.48672 1.79965 2.38277 2.41178 2.65749 2.78411 3.13614 3.60680 3.63395 3.66938 4.00312 4.11228 4.20313 4.23102 4.28211 4.46551 4.50623 4.55830 4.57897 4.65257 4.74892 4.80626 4.91505 4.95493 5.00253 5.02519 5.07560 5.11130 5.19443 5.22942 5.25341 5.26398 5.36186 5.38505 5.49939 5.61588 5.66011 5.78117 5.86383 6.22437 6.35609 6.43645 6.89683 6.97366 7.48389 8.94404 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.002920 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.527929 B = 9587.809170 C = 9901.980491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.241 3.759 3 C -0.142 4.142 4 O -0.318 6.318 5 C -0.056 4.056 6 C -0.049 4.049 7 C -0.199 4.199 8 C 0.235 3.765 9 N -0.730 5.730 10 C 0.174 3.826 11 H 0.074 0.926 12 C -0.113 4.113 13 C -0.013 4.013 14 C -0.498 4.498 15 C 0.023 3.977 16 N -0.931 5.931 17 Si 0.939 3.061 18 H -0.268 1.268 19 H -0.297 1.297 20 H -0.266 1.266 21 C 0.009 3.991 22 C -0.103 4.103 23 C -0.192 4.192 24 C 0.069 3.931 25 O -0.317 6.317 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.404 0.596 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.024 0.976 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.028 0.972 41 H 0.005 0.995 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 23.395 -1.684 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.167 3.833 3 C -0.198 4.198 4 O -0.236 6.236 5 C -0.102 4.102 6 C -0.069 4.069 7 C -0.222 4.222 8 C 0.130 3.870 9 N -0.357 5.357 10 C 0.069 3.931 11 H 0.092 0.908 12 C -0.152 4.152 13 C -0.051 4.051 14 C -0.518 4.518 15 C -0.175 4.175 16 N -0.571 5.571 17 Si 0.766 3.234 18 H -0.193 1.193 19 H -0.223 1.223 20 H -0.191 1.191 21 C -0.029 4.029 22 C -0.141 4.141 23 C -0.215 4.215 24 C 0.023 3.977 25 O -0.234 6.234 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.239 0.761 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.024 0.976 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.466 23.270 -1.726 23.966 hybrid contribution 0.925 -0.771 0.316 1.245 sum -4.541 22.499 -1.410 22.996 Atomic orbital electron populations 1.22550 0.91675 1.03690 1.05733 1.24939 0.94679 0.92500 0.71190 1.21983 1.02532 0.89396 1.05926 1.87353 1.82714 1.17086 1.36406 1.19648 1.12498 0.86332 0.91675 1.19970 0.98774 0.87383 1.00731 1.20623 1.10905 0.98359 0.92272 1.17458 0.92490 0.85655 0.91420 1.44976 1.79249 1.03109 1.08393 1.20673 0.95719 0.81741 0.94924 0.90827 1.21912 0.96361 0.97364 0.99557 1.19647 0.96076 0.93550 0.95835 1.20663 1.00076 0.98083 1.32930 1.25559 1.01114 0.95455 0.95397 1.69954 1.39134 1.05548 1.42484 0.85859 0.81375 0.76539 0.79595 1.19304 1.22349 1.19116 1.19300 0.94862 0.93655 0.95092 1.21687 0.98992 0.95248 0.98170 1.19366 1.14413 0.87391 1.00356 1.19513 1.00810 0.85516 0.91817 1.87347 1.81687 1.17003 1.37363 0.88282 0.87969 0.92900 0.91494 0.87536 0.87748 0.83431 0.84158 0.76074 0.92632 0.93816 0.95792 0.95338 0.92877 0.95361 0.97636 0.93582 0.92640 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.19 71.98 0.66 -2.25 16 2 C 0.24 5.11 1.61 30.60 0.05 5.16 16 3 C -0.14 -1.97 9.39 71.98 0.68 -1.29 16 4 O -0.32 -8.47 10.83 -77.58 -0.84 -9.31 16 5 C -0.06 -1.59 6.94 22.59 0.16 -1.44 16 6 C -0.05 -1.30 10.05 22.33 0.22 -1.08 16 7 C -0.20 -5.49 8.81 22.41 0.20 -5.30 16 8 C 0.24 6.63 6.63 38.14 0.25 6.88 16 9 N -0.73 -20.72 5.25 -318.99 -1.68 -22.40 16 10 C 0.17 5.85 2.05 44.96 0.09 5.94 16 11 H 0.07 2.48 6.49 -2.39 -0.02 2.47 16 12 C -0.11 -4.16 5.43 30.66 0.17 -3.99 16 13 C -0.01 -0.56 5.59 30.11 0.17 -0.39 16 14 C -0.50 -25.17 5.51 -16.17 -0.09 -25.26 16 15 C 0.02 1.24 5.46 84.65 0.46 1.70 16 16 N -0.93 -53.82 12.73 21.45 0.27 -53.55 16 17 Si 0.94 42.98 26.80 68.60 1.84 44.81 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.01 0.42 5.97 30.10 0.18 0.60 16 22 C -0.10 -3.91 5.40 30.66 0.17 -3.75 16 23 C -0.19 -5.22 9.91 22.47 0.22 -5.00 16 24 C 0.07 1.97 6.97 22.58 0.16 2.13 16 25 O -0.32 -8.46 10.81 -76.23 -0.82 -9.29 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.23 8.14 -2.38 -0.02 1.22 16 28 H 0.05 1.05 7.94 -2.39 -0.02 1.03 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.14 3.83 6.14 -2.91 -0.02 3.81 16 34 H 0.40 10.26 8.61 -92.71 -0.80 9.46 16 35 H 0.06 1.86 7.71 -2.39 -0.02 1.84 16 36 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.02 1.02 5.17 -2.39 -0.01 1.01 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.03 1.50 7.07 -2.39 -0.02 1.49 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -61.24 347.64 2.73 -58.51 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.21 Total: 18.54 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.74 Total: -27.33 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.40 Total: -75.94 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.66 Total: -18.60 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.84 Total: 44.81 kcal Total: -61.24 2.73 -58.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.502 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds