Wall clock time and date at job start Tue Mar 31 2020 08:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.47033 * 2 1 4 4 C 1.38622 * 119.82793 * 270.02324 * 3 2 1 5 5 C 1.38058 * 120.45670 * 179.69951 * 4 3 2 6 6 C 1.38694 * 120.10218 * 0.55165 * 5 4 3 7 7 O 1.35599 * 120.16300 * 179.72346 * 6 5 4 8 8 C 1.42900 * 117.00677 * 354.60425 * 7 6 5 9 9 H 1.09008 * 110.87999 * 326.53255 * 8 7 6 10 10 C 1.55157 * 111.00783 * 202.65491 * 8 7 6 11 11 C 1.54330 * 102.93727 * 206.38545 * 10 8 7 12 12 N 1.47013 * 107.27337 * 22.19149 * 11 10 8 13 13 C 1.36941 * 125.64711 * 181.02623 * 12 11 10 14 14 H 1.07998 * 119.99683 * 188.13955 * 13 12 11 15 15 C 1.38812 * 120.00134 * 8.13442 * 13 12 11 16 16 N 1.31612 * 119.99959 * 195.36747 * 15 13 12 17 17 Si 1.86806 * 119.99678 * 15.64990 * 15 13 12 18 18 H 1.48496 * 109.47019 * 173.53527 * 17 15 13 19 19 H 1.48504 * 109.46744 * 293.53349 * 17 15 13 20 20 H 1.48500 * 109.46959 * 53.53352 * 17 15 13 21 21 C 1.47428 * 108.70634 * 1.28506 * 12 11 10 22 22 C 1.40438 * 119.66384 * 359.45112 * 6 5 4 23 23 C 1.46785 * 120.22473 * 180.29562 * 22 6 5 24 24 C 1.50694 * 120.00370 * 179.97438 * 23 22 6 25 25 O 1.21305 * 119.99771 * 0.02562 * 23 22 6 26 26 C 1.37675 * 119.83022 * 89.99468 * 3 2 1 27 27 H 1.09000 * 109.47234 * 300.00334 * 1 2 3 28 28 H 1.09004 * 109.47173 * 60.00596 * 1 2 3 29 29 H 1.08999 * 109.46879 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47234 * 239.99665 * 2 1 3 31 31 H 1.08996 * 109.46887 * 119.99265 * 2 1 3 32 32 H 1.08001 * 119.77721 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.94791 * 180.30080 * 5 4 3 34 34 H 1.08997 * 110.72286 * 88.02018 * 10 8 7 35 35 H 1.09003 * 110.71607 * 324.74480 * 10 8 7 36 36 H 1.08999 * 109.87966 * 262.76866 * 11 10 8 37 37 H 1.09003 * 109.88013 * 141.61049 * 11 10 8 38 38 H 0.96997 * 120.00099 * 5.43431 * 16 15 13 39 39 H 1.08999 * 110.36512 * 94.48158 * 21 12 11 40 40 H 1.08999 * 110.36740 * 216.80861 * 21 12 11 41 41 H 1.09001 * 109.47274 * 90.00193 * 24 23 22 42 42 H 1.08997 * 109.47415 * 210.00143 * 24 23 22 43 43 H 1.09005 * 109.46940 * 329.99884 * 24 23 22 44 44 H 1.07996 * 120.06145 * 0.04767 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2617 2.0711 -1.2026 5 6 2.7159 3.3747 -1.2177 6 6 2.9576 4.0411 -0.0256 7 8 3.4091 5.3196 -0.0391 8 6 3.7279 5.8818 -1.3136 9 1 4.1214 5.1200 -1.9868 10 6 4.7237 7.0626 -1.1673 11 6 4.4228 7.9245 -2.4116 12 7 3.0611 7.5916 -2.8543 13 6 2.4224 8.1256 -3.9416 14 1 1.3764 7.9162 -4.1102 15 6 3.1195 8.9362 -4.8271 16 7 2.4645 9.6876 -5.6865 17 14 4.9873 8.9544 -4.8042 18 1 5.4882 9.7722 -5.9380 19 1 5.4608 9.5400 -3.5243 20 1 5.4975 7.5657 -4.9320 21 6 2.4945 6.5923 -1.9303 22 6 2.7268 3.3869 1.1955 23 6 2.9722 4.0826 2.4645 24 6 2.7223 3.3760 3.7718 25 8 3.3753 5.2267 2.4608 26 6 2.2605 2.0666 1.1943 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.0796 1.5559 -2.1341 33 1 2.8873 3.8751 -2.1594 34 1 5.7528 6.7039 -1.1862 35 1 4.5261 7.6227 -0.2532 36 1 5.1365 7.6950 -3.2028 37 1 4.4805 8.9818 -2.1529 38 1 1.4964 9.7356 -5.6494 39 1 1.9088 7.0833 -1.1531 40 1 1.8788 5.8772 -2.4758 41 1 3.6310 2.8634 4.0873 42 1 2.4345 4.1048 4.5295 43 1 1.9204 2.6487 3.6443 44 1 2.0806 1.5556 2.1286 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228641040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:33 Heat of formation + Delta-G solvation = -18.754781 kcal Electronic energy + Delta-G solvation = -24874.565982 eV Core-core repulsion = 21372.370613 eV Total energy + Delta-G solvation = -3502.195369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 14.56 seconds Orbital eigenvalues (eV) -40.67201 -38.89215 -38.21254 -36.68799 -33.75294 -32.47143 -32.13667 -29.88283 -29.43634 -28.82803 -28.07313 -24.36213 -24.07388 -23.51676 -21.88274 -20.80345 -20.18932 -19.56778 -18.21618 -17.54964 -16.35666 -16.19671 -15.75717 -15.15143 -15.06410 -14.69291 -14.52916 -14.41572 -14.32941 -13.83674 -13.48695 -13.37868 -13.27621 -12.85901 -12.66736 -12.51493 -12.28727 -12.24540 -12.01427 -11.66859 -11.52410 -11.38935 -11.30223 -11.18936 -11.04481 -10.65115 -10.31161 -9.96031 -9.60043 -9.40913 -9.16876 -9.02953 -8.74360 -8.13133 -7.10048 -6.34840 -3.26095 0.62557 1.27617 2.41223 3.19573 3.40396 3.45792 3.63266 3.69341 3.99896 4.47854 4.59165 4.59550 4.77310 4.83825 4.92160 4.95730 5.03312 5.09713 5.14281 5.17628 5.23529 5.26337 5.30103 5.35631 5.38719 5.46526 5.59877 5.63138 5.72524 5.76353 5.80610 5.91877 5.95206 6.02976 6.16082 6.20161 6.34117 6.38453 6.42067 6.47489 6.64445 6.70677 7.47754 7.60329 7.64056 8.28961 8.99820 9.50284 10.16058 11.15841 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.003822 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.575601 B = 7324.596117 C = 8312.392725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.042 4.042 5 C -0.220 4.220 6 C 0.193 3.807 7 O -0.272 6.272 8 C 0.056 3.944 9 H 0.085 0.915 10 C -0.118 4.118 11 C 0.109 3.891 12 N -0.609 5.609 13 C -0.325 4.325 14 H 0.080 0.920 15 C -0.020 4.020 16 N -0.926 5.926 17 Si 1.070 2.930 18 H -0.300 1.300 19 H -0.285 1.285 20 H -0.298 1.298 21 C 0.123 3.877 22 C -0.213 4.213 23 C 0.388 3.612 24 C -0.197 4.197 25 O -0.439 6.439 26 C -0.037 4.037 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.262 0.738 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -21.156 16.045 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.144 4.144 4 C -0.060 4.060 5 C -0.238 4.238 6 C 0.144 3.856 7 O -0.182 6.182 8 C -0.001 4.001 9 H 0.103 0.897 10 C -0.156 4.156 11 C -0.015 4.015 12 N -0.338 5.338 13 C -0.451 4.451 14 H 0.098 0.902 15 C -0.219 4.219 16 N -0.567 5.567 17 Si 0.904 3.096 18 H -0.228 1.228 19 H -0.213 1.213 20 H -0.227 1.227 21 C -0.004 4.004 22 C -0.214 4.214 23 C 0.265 3.735 24 C -0.254 4.254 25 O -0.313 6.313 26 C -0.055 4.055 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.773 -19.719 15.357 25.056 hybrid contribution -1.468 -0.874 0.435 1.763 sum 0.305 -20.592 15.792 25.952 Atomic orbital electron populations 1.21787 0.94922 1.01551 1.02382 1.20440 0.96016 0.92231 1.02727 1.19686 1.04680 0.97232 0.92817 1.21063 0.93732 0.93350 0.97852 1.21466 1.07592 0.96852 0.97900 1.19350 0.89232 0.84038 0.92960 1.86287 1.76802 1.23081 1.32052 1.24056 0.98108 0.95356 0.82615 0.89714 1.22647 0.97832 0.95208 0.99917 1.22054 0.88161 0.98072 0.93245 1.44676 1.12329 1.46743 1.30094 1.20180 0.95270 1.28115 1.01568 0.90249 1.25822 1.06612 0.95161 0.94339 1.70888 1.09468 1.37559 1.38742 0.83840 0.76007 0.74946 0.74824 1.22831 1.21268 1.22673 1.22023 0.93479 0.91642 0.93257 1.19911 1.12694 0.96061 0.92769 1.22151 0.74345 0.87180 0.89778 1.22214 1.03919 1.02623 0.96666 1.90626 1.33095 1.17917 1.89686 1.21096 0.94368 0.91942 0.98107 0.92556 0.92477 0.92537 0.91119 0.91168 0.85468 0.84217 0.90606 0.89714 0.94792 0.92867 0.92773 0.94435 0.93307 0.88853 0.89623 0.89908 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.08 -0.53 6.05 -27.88 -0.17 -0.70 16 3 C -0.14 -1.38 5.13 -104.68 -0.54 -1.91 16 4 C -0.04 -0.46 9.68 -39.51 -0.38 -0.84 16 5 C -0.22 -3.00 8.91 -39.48 -0.35 -3.35 16 6 C 0.19 2.96 6.70 -38.59 -0.26 2.70 16 7 O -0.27 -4.87 8.02 -40.40 -0.32 -5.19 16 8 C 0.06 1.01 2.81 -24.46 -0.07 0.94 16 9 H 0.09 1.43 6.30 -51.92 -0.33 1.10 16 10 C -0.12 -2.17 6.68 -24.89 -0.17 -2.33 16 11 C 0.11 2.45 4.63 -3.07 -0.01 2.43 16 12 N -0.61 -15.37 3.34 -169.93 -0.57 -15.93 16 13 C -0.32 -9.45 10.56 -15.06 -0.16 -9.61 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 15 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 16 N -0.93 -29.32 13.70 55.49 0.76 -28.56 16 17 Si 1.07 26.95 24.52 -169.99 -4.17 22.78 16 18 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 19 H -0.29 -6.60 5.48 56.52 0.31 -6.29 16 20 H -0.30 -7.15 6.76 56.52 0.38 -6.77 16 21 C 0.12 2.61 6.83 -2.41 -0.02 2.59 16 22 C -0.21 -2.77 5.88 -104.95 -0.62 -3.39 16 23 C 0.39 5.10 7.22 -30.86 -0.22 4.88 16 24 C -0.20 -1.57 9.75 36.00 0.35 -1.22 16 25 O -0.44 -7.68 15.91 -16.37 -0.26 -7.94 16 26 C -0.04 -0.36 9.00 -39.12 -0.35 -0.71 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.14 1.97 5.60 -52.49 -0.29 1.68 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.03 0.79 3.75 -51.93 -0.19 0.59 16 37 H 0.05 1.24 6.73 -51.93 -0.35 0.89 16 38 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.01 7.74 -51.93 -0.40 0.61 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.47 6.47 -51.93 -0.34 0.13 16 44 H 0.13 0.87 6.36 -52.49 -0.33 0.54 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -34.56 349.14 -8.56 -43.12 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.57 Total: -1.70 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.69 Total: -11.83 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.19 Total: -44.50 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.58 Total: -13.13 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -4.17 Total: 22.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.56 -8.56 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228641040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.362 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.57 seconds