Wall clock time and date at job start Tue Mar 31 2020 08:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.47033 * 2 1 4 4 C 1.38622 * 119.82793 * 270.02324 * 3 2 1 5 5 C 1.38058 * 120.45670 * 179.69951 * 4 3 2 6 6 C 1.38694 * 120.10218 * 0.55165 * 5 4 3 7 7 O 1.35599 * 120.16300 * 179.72346 * 6 5 4 8 8 C 1.42900 * 117.00677 * 354.60425 * 7 6 5 9 9 H 1.09008 * 110.87999 * 326.53255 * 8 7 6 10 10 C 1.55157 * 111.00783 * 202.65491 * 8 7 6 11 11 C 1.54330 * 102.93727 * 206.38545 * 10 8 7 12 12 N 1.47013 * 107.27337 * 22.19149 * 11 10 8 13 13 C 1.36941 * 125.64711 * 181.02623 * 12 11 10 14 14 H 1.07998 * 119.99683 * 188.13955 * 13 12 11 15 15 C 1.38812 * 120.00134 * 8.13442 * 13 12 11 16 16 N 1.31612 * 119.99959 * 195.36747 * 15 13 12 17 17 Si 1.86806 * 119.99678 * 15.64990 * 15 13 12 18 18 H 1.48496 * 109.47019 * 173.53527 * 17 15 13 19 19 H 1.48504 * 109.46744 * 293.53349 * 17 15 13 20 20 H 1.48500 * 109.46959 * 53.53352 * 17 15 13 21 21 C 1.47428 * 108.70634 * 1.28506 * 12 11 10 22 22 C 1.40438 * 119.66384 * 359.45112 * 6 5 4 23 23 C 1.46785 * 120.22473 * 180.29562 * 22 6 5 24 24 C 1.50694 * 120.00370 * 179.97438 * 23 22 6 25 25 O 1.21305 * 119.99771 * 0.02562 * 23 22 6 26 26 C 1.37675 * 119.83022 * 89.99468 * 3 2 1 27 27 H 1.09000 * 109.47234 * 300.00334 * 1 2 3 28 28 H 1.09004 * 109.47173 * 60.00596 * 1 2 3 29 29 H 1.08999 * 109.46879 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47234 * 239.99665 * 2 1 3 31 31 H 1.08996 * 109.46887 * 119.99265 * 2 1 3 32 32 H 1.08001 * 119.77721 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.94791 * 180.30080 * 5 4 3 34 34 H 1.08997 * 110.72286 * 88.02018 * 10 8 7 35 35 H 1.09003 * 110.71607 * 324.74480 * 10 8 7 36 36 H 1.08999 * 109.87966 * 262.76866 * 11 10 8 37 37 H 1.09003 * 109.88013 * 141.61049 * 11 10 8 38 38 H 0.96997 * 120.00099 * 5.43431 * 16 15 13 39 39 H 1.08999 * 110.36512 * 94.48158 * 21 12 11 40 40 H 1.08999 * 110.36740 * 216.80861 * 21 12 11 41 41 H 1.09001 * 109.47274 * 90.00193 * 24 23 22 42 42 H 1.08997 * 109.47415 * 210.00143 * 24 23 22 43 43 H 1.09005 * 109.46940 * 329.99884 * 24 23 22 44 44 H 1.07996 * 120.06145 * 0.04767 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2617 2.0711 -1.2026 5 6 2.7159 3.3747 -1.2177 6 6 2.9576 4.0411 -0.0256 7 8 3.4091 5.3196 -0.0391 8 6 3.7279 5.8818 -1.3136 9 1 4.1214 5.1200 -1.9868 10 6 4.7237 7.0626 -1.1673 11 6 4.4228 7.9245 -2.4116 12 7 3.0611 7.5916 -2.8543 13 6 2.4224 8.1256 -3.9416 14 1 1.3764 7.9162 -4.1102 15 6 3.1195 8.9362 -4.8271 16 7 2.4645 9.6876 -5.6865 17 14 4.9873 8.9544 -4.8042 18 1 5.4882 9.7722 -5.9380 19 1 5.4608 9.5400 -3.5243 20 1 5.4975 7.5657 -4.9320 21 6 2.4945 6.5923 -1.9303 22 6 2.7268 3.3869 1.1955 23 6 2.9722 4.0826 2.4645 24 6 2.7223 3.3760 3.7718 25 8 3.3753 5.2267 2.4608 26 6 2.2605 2.0666 1.1943 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.0796 1.5559 -2.1341 33 1 2.8873 3.8751 -2.1594 34 1 5.7528 6.7039 -1.1862 35 1 4.5261 7.6227 -0.2532 36 1 5.1365 7.6950 -3.2028 37 1 4.4805 8.9818 -2.1529 38 1 1.4964 9.7356 -5.6494 39 1 1.9088 7.0833 -1.1531 40 1 1.8788 5.8772 -2.4758 41 1 3.6310 2.8634 4.0873 42 1 2.4345 4.1048 4.5295 43 1 1.9204 2.6487 3.6443 44 1 2.0806 1.5556 2.1286 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228641040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:32 Heat of formation + Delta-G solvation = -39.732045 kcal Electronic energy + Delta-G solvation = -24875.475624 eV Core-core repulsion = 21372.370613 eV Total energy + Delta-G solvation = -3503.105012 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75225 -40.16702 -39.26337 -38.19034 -34.82106 -34.30849 -33.04796 -31.63604 -30.40152 -29.92163 -29.40714 -26.09058 -25.01074 -24.48591 -23.09193 -22.54841 -21.51279 -20.50230 -19.68213 -19.35967 -17.57954 -17.32780 -17.11442 -16.43850 -16.25746 -15.79465 -15.62428 -15.46365 -15.40020 -15.31947 -15.11419 -14.55568 -14.26506 -14.20629 -13.91593 -13.65846 -13.38838 -13.18091 -13.14144 -12.96558 -12.92814 -12.66376 -12.52117 -12.24724 -11.92270 -11.75641 -11.69152 -11.64164 -11.46483 -11.14224 -10.78072 -10.59003 -10.08806 -9.24595 -9.12587 -8.73379 -5.56992 -0.30855 0.34677 1.38106 1.46989 1.48298 1.69131 1.96585 2.50733 2.71647 3.01743 3.14564 3.25593 3.39903 3.62954 3.69052 3.78003 3.84473 3.97694 4.11238 4.17914 4.23739 4.31536 4.36969 4.53761 4.54621 4.60238 4.61365 4.69340 4.70599 4.71123 4.76919 4.87378 4.93118 5.02021 5.09968 5.11816 5.16165 5.24503 5.33985 5.39844 5.46567 5.61117 5.76409 5.99128 6.32199 6.69699 6.71544 7.30579 7.96118 8.79152 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.003822 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.575601 B = 7324.596117 C = 8312.392725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.044 4.044 5 C -0.235 4.235 6 C 0.152 3.848 7 O -0.290 6.290 8 C 0.074 3.926 9 H 0.098 0.902 10 C -0.109 4.109 11 C 0.101 3.899 12 N -0.629 5.629 13 C -0.320 4.320 14 H 0.046 0.954 15 C -0.074 4.074 16 N -0.958 5.958 17 Si 1.108 2.892 18 H -0.308 1.308 19 H -0.252 1.252 20 H -0.276 1.276 21 C 0.122 3.878 22 C -0.227 4.227 23 C 0.384 3.616 24 C -0.189 4.189 25 O -0.496 6.496 26 C -0.023 4.023 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.248 0.752 39 H 0.022 0.978 40 H 0.046 0.954 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -24.936 18.484 31.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.135 4.135 4 C -0.062 4.062 5 C -0.253 4.253 6 C 0.105 3.895 7 O -0.201 6.201 8 C 0.016 3.984 9 H 0.116 0.884 10 C -0.147 4.147 11 C -0.023 4.023 12 N -0.358 5.358 13 C -0.448 4.448 14 H 0.064 0.936 15 C -0.267 4.267 16 N -0.602 5.602 17 Si 0.934 3.066 18 H -0.237 1.237 19 H -0.177 1.177 20 H -0.203 1.203 21 C -0.004 4.004 22 C -0.228 4.228 23 C 0.265 3.735 24 C -0.245 4.245 25 O -0.375 6.375 26 C -0.041 4.041 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.135 0.865 42 H 0.104 0.896 43 H 0.132 0.868 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.024 -23.561 17.848 29.712 hybrid contribution -2.067 0.117 -0.263 2.087 sum 0.958 -23.444 17.585 29.322 Atomic orbital electron populations 1.21796 0.94723 1.02413 1.01801 1.20522 0.95985 0.90217 1.04402 1.20109 1.02740 0.98530 0.92101 1.21370 0.92788 0.92373 0.99639 1.21441 1.08953 0.98084 0.96852 1.19781 0.91519 0.83526 0.94662 1.86262 1.77962 1.24890 1.30977 1.23695 0.95806 0.95498 0.83376 0.88399 1.22614 0.99784 0.94524 0.97753 1.22198 0.86513 0.98467 0.95117 1.44710 1.13741 1.47826 1.29499 1.20066 0.94211 1.27666 1.02850 0.93566 1.27192 1.10754 0.94756 0.94028 1.70997 1.08673 1.39820 1.40684 0.83423 0.70885 0.76234 0.76017 1.23703 1.17713 1.20316 1.22039 0.95095 0.91029 0.92237 1.20280 1.13018 0.97398 0.92130 1.22993 0.72324 0.86516 0.91712 1.22242 1.06057 1.02865 0.93360 1.90606 1.35959 1.20383 1.90515 1.21548 0.92134 0.90369 1.00005 0.92451 0.93825 0.91018 0.90278 0.88801 0.83605 0.85624 0.87063 0.89755 0.94156 0.93798 0.94286 0.95989 0.93556 0.86483 0.89602 0.86817 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 71.98 0.71 -0.73 16 2 C -0.07 -0.68 6.05 29.85 0.18 -0.50 16 3 C -0.13 -2.11 5.13 -19.90 -0.10 -2.21 16 4 C -0.04 -0.88 9.68 22.32 0.22 -0.66 16 5 C -0.23 -6.34 8.91 22.34 0.20 -6.14 16 6 C 0.15 4.65 6.70 22.92 0.15 4.80 16 7 O -0.29 -10.50 8.02 -68.15 -0.55 -11.05 16 8 C 0.07 2.67 2.81 32.06 0.09 2.76 16 9 H 0.10 3.27 6.30 -2.38 -0.02 3.25 16 10 C -0.11 -3.86 6.68 31.78 0.21 -3.65 16 11 C 0.10 4.43 4.63 86.73 0.40 4.83 16 12 N -0.63 -32.35 3.34 -691.55 -2.31 -34.66 16 13 C -0.32 -19.37 10.56 84.03 0.89 -18.48 16 14 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 15 C -0.07 -4.55 5.50 84.86 0.47 -4.08 16 16 N -0.96 -63.00 13.70 21.65 0.30 -62.71 16 17 Si 1.11 54.19 24.52 68.60 1.68 55.87 16 18 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 19 H -0.25 -10.95 5.48 99.48 0.55 -10.40 16 20 H -0.28 -12.44 6.76 99.48 0.67 -11.76 16 21 C 0.12 5.37 6.83 86.93 0.59 5.96 16 22 C -0.23 -5.54 5.88 -20.08 -0.12 -5.65 16 23 C 0.38 9.54 7.22 27.92 0.20 9.74 16 24 C -0.19 -2.34 9.75 71.23 0.69 -1.65 16 25 O -0.50 -17.54 15.91 17.84 0.28 -17.26 16 26 C -0.02 -0.36 9.00 22.57 0.20 -0.16 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.65 8.08 -2.39 -0.02 0.64 16 31 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 32 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.13 3.64 5.60 -2.91 -0.02 3.62 16 34 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.04 1.76 3.75 -2.39 -0.01 1.76 16 37 H 0.04 2.01 6.73 -2.39 -0.02 1.99 16 38 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 39 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.05 2.01 7.74 -2.39 -0.02 2.00 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 43 H 0.11 0.68 6.47 -2.38 -0.02 0.67 16 44 H 0.18 1.21 6.36 -2.91 -0.02 1.19 16 Total: -1.00 -80.48 349.14 5.16 -75.31 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.77 Total: 10.29 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 4.99 Total: -15.81 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -2.01 Total: -97.36 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.26 Total: -28.30 kcal Atomic # 14 Polarization: 54.19 SS G_CDS: 1.68 Total: 55.87 kcal Total: -80.48 5.16 -75.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228641040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.582 kcal (2) G-P(sol) polarization free energy of solvation -80.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds