Wall clock time and date at job start Tue Mar 31 2020 09:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32590 * 119.99691 * 2 1 4 4 C 1.47775 * 119.99638 * 179.97438 * 3 2 1 5 5 C 1.39556 * 120.07061 * 0.02562 * 4 3 2 6 6 C 1.37946 * 120.00614 * 180.02562 * 5 4 3 7 7 C 1.38694 * 120.14445 * 359.97438 * 6 5 4 8 8 O 1.35954 * 119.93225 * 179.97438 * 7 6 5 9 9 C 1.42902 * 117.00105 * 0.02562 * 8 7 6 10 10 C 1.39274 * 120.13693 * 0.02562 * 7 6 5 11 11 O 1.36002 * 120.00257 * 179.97438 * 10 7 6 12 12 C 1.42899 * 116.99746 * 174.89448 * 11 10 7 13 13 H 1.09003 * 110.64248 * 321.82742 * 12 11 10 14 14 C 1.55150 * 110.72056 * 198.48697 * 12 11 10 15 15 C 1.55135 * 101.48920 * 205.97066 * 14 12 11 16 16 N 1.47423 * 104.71891 * 37.29597 * 15 14 12 17 17 C 1.36936 * 125.64619 * 155.81957 * 16 15 14 18 18 H 1.07994 * 119.99756 * 179.68494 * 17 16 15 19 19 C 1.38813 * 119.99836 * 359.69203 * 17 16 15 20 20 N 1.31611 * 120.00109 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99795 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46916 * 269.99974 * 21 19 17 23 23 H 1.48498 * 109.47189 * 29.99567 * 21 19 17 24 24 H 1.48499 * 109.47294 * 149.99963 * 21 19 17 25 25 C 1.47022 * 108.70553 * 335.55355 * 16 15 14 26 26 C 1.38282 * 119.99309 * 0.23340 * 10 7 6 27 27 H 1.08999 * 109.47255 * 60.00044 * 1 2 3 28 28 H 1.09010 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47346 * 299.99581 * 1 2 3 30 30 H 1.08004 * 119.99668 * 179.97438 * 2 1 3 31 31 H 1.08001 * 120.00416 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99827 * 0.02562 * 5 4 3 33 33 H 1.08007 * 119.93016 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46976 * 59.99913 * 9 8 7 35 35 H 1.09003 * 109.47258 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47046 * 299.99835 * 9 8 7 37 37 H 1.09003 * 111.00506 * 324.20676 * 14 12 11 38 38 H 1.09004 * 111.00838 * 88.02040 * 14 12 11 39 39 H 1.09003 * 110.49444 * 278.45296 * 15 14 12 40 40 H 1.08999 * 110.34300 * 156.05795 * 15 14 12 41 41 H 0.96999 * 119.99887 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.88176 * 120.70369 * 25 16 15 43 43 H 1.08998 * 109.88482 * 241.72192 * 25 16 15 44 44 H 1.08003 * 120.06947 * 179.74022 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1483 0.0000 4 6 3.6477 1.1483 0.0006 5 6 4.3469 -0.0595 0.0006 6 6 5.7264 -0.0579 0.0016 7 6 6.4215 1.1422 0.0022 8 8 7.7811 1.1387 0.0038 9 6 8.4266 -0.1362 0.0042 10 6 5.7297 2.3510 0.0022 11 8 6.4142 3.5263 0.0032 12 6 5.6448 4.7251 -0.1101 13 1 4.8140 4.5846 -0.8016 14 6 6.5398 5.9117 -0.5551 15 6 5.7611 7.1211 0.0262 16 7 5.2395 6.6438 1.3198 17 6 4.9042 7.4351 2.3859 18 1 4.5242 6.9874 3.2922 19 6 5.0526 8.8127 2.3016 20 7 5.5161 9.3583 1.1972 21 14 4.5959 9.8921 3.7562 22 1 3.1688 10.2887 3.6495 23 1 4.8069 9.1378 5.0178 24 1 5.4487 11.1077 3.7577 25 6 5.1328 5.1782 1.2735 26 6 4.3469 2.3561 0.0065 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 2.0470 -0.9354 0.0004 31 1 1.6299 2.0836 0.0004 32 1 3.8080 -0.9954 -0.0003 33 1 6.2663 -0.9933 0.0021 34 1 8.1333 -0.6923 -0.8862 35 1 9.5076 0.0038 0.0051 36 1 8.1312 -0.6926 0.8938 37 1 7.5349 5.8364 -0.1168 38 1 6.5975 5.9716 -1.6420 39 1 4.9401 7.3996 -0.6345 40 1 6.4320 7.9669 0.1764 41 1 5.6195 10.3209 1.1382 42 1 5.7467 4.7369 2.0586 43 1 4.0931 4.8779 1.4031 44 1 3.8093 3.2928 0.0108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229247550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:16 Heat of formation + Delta-G solvation = -3.211714 kcal Electronic energy + Delta-G solvation = -24512.280240 eV Core-core repulsion = 21010.758869 eV Total energy + Delta-G solvation = -3501.521371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.51115 -38.70655 -37.58728 -36.19886 -34.48982 -32.30379 -30.62839 -30.13928 -29.09671 -27.87577 -27.23608 -25.89222 -24.56575 -22.78948 -22.07675 -20.35619 -20.12251 -19.25076 -18.42744 -17.04855 -16.95540 -16.25855 -15.83818 -15.51790 -14.96348 -14.74050 -14.60326 -14.14620 -13.80716 -13.68989 -13.47658 -13.35771 -12.85096 -12.54967 -12.42677 -12.30160 -12.02975 -11.77683 -11.64333 -11.55635 -11.36292 -11.17671 -11.01074 -10.88968 -10.78407 -10.40850 -10.23600 -10.05805 -9.80804 -9.60297 -9.55541 -8.67444 -8.41196 -7.47394 -6.87085 -5.67080 -3.09423 0.92702 1.40476 2.47075 3.28326 3.40286 3.44413 3.46592 3.50468 3.88255 4.48237 4.61445 4.66561 4.90304 4.94351 5.06024 5.13027 5.20537 5.23816 5.30411 5.36878 5.39186 5.40468 5.45566 5.47364 5.52870 5.63042 5.66574 5.75356 5.81151 6.13297 6.21119 6.28457 6.31682 6.43857 6.52439 6.54321 6.60491 6.65544 6.74846 6.81629 7.25742 7.45083 7.60584 7.78392 7.86806 8.32912 9.19518 9.79818 10.43378 11.37087 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.003781 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.024427 B = 7402.919726 C = 8956.563400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.159 4.159 3 C -0.113 4.113 4 C -0.054 4.054 5 C -0.120 4.120 6 C -0.174 4.174 7 C 0.093 3.907 8 O -0.304 6.304 9 C 0.027 3.973 10 C 0.117 3.883 11 O -0.293 6.293 12 C 0.069 3.931 13 H 0.075 0.925 14 C -0.133 4.133 15 C 0.152 3.848 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.118 3.882 26 C -0.162 4.162 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.016 0.984 40 H 0.115 0.885 41 H 0.253 0.747 42 H 0.035 0.965 43 H 0.025 0.975 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -21.091 -5.388 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.177 4.177 3 C -0.131 4.131 4 C -0.054 4.054 5 C -0.138 4.138 6 C -0.192 4.192 7 C 0.047 3.953 8 O -0.217 6.217 9 C -0.068 4.068 10 C 0.070 3.930 11 O -0.206 6.206 12 C 0.012 3.988 13 H 0.093 0.907 14 C -0.172 4.172 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.572 5.572 21 Si 0.747 3.253 22 H -0.216 1.216 23 H -0.206 1.206 24 H -0.216 1.216 25 C -0.009 4.009 26 C -0.181 4.181 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.132 0.868 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.731 -20.660 -5.302 21.400 hybrid contribution -0.530 0.253 0.724 0.932 sum -2.261 -20.407 -4.578 21.036 Atomic orbital electron populations 1.20834 0.92843 1.02242 1.02181 1.23290 0.96081 0.97885 1.00435 1.21627 0.91737 0.98605 1.01093 1.18705 0.93022 0.92293 1.01409 1.20872 0.93057 0.97410 1.02491 1.20894 0.95024 0.96007 1.07322 1.18363 0.82792 0.91567 1.02560 1.86208 1.15831 1.30738 1.88920 1.23032 0.98192 0.84666 1.00898 1.18232 0.89884 0.85133 0.99713 1.86273 1.35339 1.11650 1.87325 1.23674 0.94726 0.82270 0.98104 0.90734 1.23213 0.99785 0.94266 0.99942 1.22061 0.96184 0.94108 0.84886 1.44383 1.76295 0.99102 1.13040 1.19091 1.35992 0.87981 0.92050 0.90386 1.24789 1.01599 0.96452 0.97713 1.69750 1.51675 1.10138 1.25598 0.86042 0.77762 0.80052 0.81469 1.21589 1.20642 1.21572 1.21746 0.97518 0.87462 0.94130 1.21357 0.91955 0.99210 1.05584 0.91556 0.92120 0.91481 0.87077 0.86376 0.85710 0.85010 0.92965 0.88363 0.92904 0.90705 0.91531 0.96563 0.86788 0.93615 0.94680 0.95710 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.18 36.01 0.37 -0.60 16 2 C -0.16 -1.52 9.68 -36.21 -0.35 -1.87 16 3 C -0.11 -1.30 9.55 -37.59 -0.36 -1.66 16 4 C -0.05 -0.72 5.87 -105.01 -0.62 -1.34 16 5 C -0.12 -1.42 9.39 -39.20 -0.37 -1.79 16 6 C -0.17 -2.10 9.02 -39.52 -0.36 -2.46 16 7 C 0.09 1.40 6.70 -39.03 -0.26 1.14 16 8 O -0.30 -4.51 10.27 -34.28 -0.35 -4.86 16 9 C 0.03 0.25 9.81 101.05 0.99 1.25 16 10 C 0.12 1.98 6.63 -39.18 -0.26 1.72 16 11 O -0.29 -5.63 9.65 -34.43 -0.33 -5.97 16 12 C 0.07 1.33 2.77 -24.90 -0.07 1.26 16 13 H 0.07 1.33 6.58 -51.93 -0.34 0.98 16 14 C -0.13 -2.70 6.82 -24.46 -0.17 -2.86 16 15 C 0.15 3.75 5.91 -2.41 -0.01 3.74 16 16 N -0.60 -15.85 3.39 -169.93 -0.58 -16.42 16 17 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.92 10.08 55.49 0.56 -26.36 16 21 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.12 2.62 6.51 -3.06 -0.02 2.60 16 26 C -0.16 -2.50 8.50 -39.07 -0.33 -2.83 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.11 0.94 6.03 -52.48 -0.32 0.63 16 31 H 0.12 1.32 8.05 -52.49 -0.42 0.90 16 32 H 0.13 1.15 6.15 -52.48 -0.32 0.82 16 33 H 0.13 1.19 6.27 -52.48 -0.33 0.86 16 34 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 3.13 5.85 -51.93 -0.30 2.82 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 43 H 0.03 0.54 7.43 -51.93 -0.39 0.15 16 44 H 0.14 2.18 5.30 -52.48 -0.28 1.90 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -31.91 355.55 -8.85 -40.77 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.42 Total: 0.88 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.07 Total: -10.58 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.02 Total: -42.79 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.68 Total: -10.83 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.91 -8.85 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229247550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.556 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds