Wall clock time and date at job start Tue Mar 31 2020 09:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32590 * 119.99691 * 2 1 4 4 C 1.47775 * 119.99638 * 179.97438 * 3 2 1 5 5 C 1.39556 * 120.07061 * 0.02562 * 4 3 2 6 6 C 1.37946 * 120.00614 * 180.02562 * 5 4 3 7 7 C 1.38694 * 120.14445 * 359.97438 * 6 5 4 8 8 O 1.35954 * 119.93225 * 179.97438 * 7 6 5 9 9 C 1.42902 * 117.00105 * 0.02562 * 8 7 6 10 10 C 1.39274 * 120.13693 * 0.02562 * 7 6 5 11 11 O 1.36002 * 120.00257 * 179.97438 * 10 7 6 12 12 C 1.42899 * 116.99746 * 174.89448 * 11 10 7 13 13 H 1.09003 * 110.64248 * 321.82742 * 12 11 10 14 14 C 1.55150 * 110.72056 * 198.48697 * 12 11 10 15 15 C 1.55135 * 101.48920 * 205.97066 * 14 12 11 16 16 N 1.47423 * 104.71891 * 37.29597 * 15 14 12 17 17 C 1.36936 * 125.64619 * 155.81957 * 16 15 14 18 18 H 1.07994 * 119.99756 * 179.68494 * 17 16 15 19 19 C 1.38813 * 119.99836 * 359.69203 * 17 16 15 20 20 N 1.31611 * 120.00109 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99795 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46916 * 269.99974 * 21 19 17 23 23 H 1.48498 * 109.47189 * 29.99567 * 21 19 17 24 24 H 1.48499 * 109.47294 * 149.99963 * 21 19 17 25 25 C 1.47022 * 108.70553 * 335.55355 * 16 15 14 26 26 C 1.38282 * 119.99309 * 0.23340 * 10 7 6 27 27 H 1.08999 * 109.47255 * 60.00044 * 1 2 3 28 28 H 1.09010 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47346 * 299.99581 * 1 2 3 30 30 H 1.08004 * 119.99668 * 179.97438 * 2 1 3 31 31 H 1.08001 * 120.00416 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99827 * 0.02562 * 5 4 3 33 33 H 1.08007 * 119.93016 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46976 * 59.99913 * 9 8 7 35 35 H 1.09003 * 109.47258 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47046 * 299.99835 * 9 8 7 37 37 H 1.09003 * 111.00506 * 324.20676 * 14 12 11 38 38 H 1.09004 * 111.00838 * 88.02040 * 14 12 11 39 39 H 1.09003 * 110.49444 * 278.45296 * 15 14 12 40 40 H 1.08999 * 110.34300 * 156.05795 * 15 14 12 41 41 H 0.96999 * 119.99887 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.88176 * 120.70369 * 25 16 15 43 43 H 1.08998 * 109.88482 * 241.72192 * 25 16 15 44 44 H 1.08003 * 120.06947 * 179.74022 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1483 0.0000 4 6 3.6477 1.1483 0.0006 5 6 4.3469 -0.0595 0.0006 6 6 5.7264 -0.0579 0.0016 7 6 6.4215 1.1422 0.0022 8 8 7.7811 1.1387 0.0038 9 6 8.4266 -0.1362 0.0042 10 6 5.7297 2.3510 0.0022 11 8 6.4142 3.5263 0.0032 12 6 5.6448 4.7251 -0.1101 13 1 4.8140 4.5846 -0.8016 14 6 6.5398 5.9117 -0.5551 15 6 5.7611 7.1211 0.0262 16 7 5.2395 6.6438 1.3198 17 6 4.9042 7.4351 2.3859 18 1 4.5242 6.9874 3.2922 19 6 5.0526 8.8127 2.3016 20 7 5.5161 9.3583 1.1972 21 14 4.5959 9.8921 3.7562 22 1 3.1688 10.2887 3.6495 23 1 4.8069 9.1378 5.0178 24 1 5.4487 11.1077 3.7577 25 6 5.1328 5.1782 1.2735 26 6 4.3469 2.3561 0.0065 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 2.0470 -0.9354 0.0004 31 1 1.6299 2.0836 0.0004 32 1 3.8080 -0.9954 -0.0003 33 1 6.2663 -0.9933 0.0021 34 1 8.1333 -0.6923 -0.8862 35 1 9.5076 0.0038 0.0051 36 1 8.1312 -0.6926 0.8938 37 1 7.5349 5.8364 -0.1168 38 1 6.5975 5.9716 -1.6420 39 1 4.9401 7.3996 -0.6345 40 1 6.4320 7.9669 0.1764 41 1 5.6195 10.3209 1.1382 42 1 5.7467 4.7369 2.0586 43 1 4.0931 4.8779 1.4031 44 1 3.8093 3.2928 0.0108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229247550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:15 Heat of formation + Delta-G solvation = -20.756828 kcal Electronic energy + Delta-G solvation = -24513.041053 eV Core-core repulsion = 21010.758869 eV Total energy + Delta-G solvation = -3502.282185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65204 -40.03505 -38.65881 -37.83057 -35.38278 -34.29403 -31.61765 -31.50285 -30.70762 -29.20640 -28.43297 -26.82046 -26.46023 -23.94839 -23.15872 -22.18426 -21.60492 -20.31260 -19.50236 -18.99749 -18.11601 -17.47967 -16.92313 -16.79553 -16.50227 -16.22050 -15.77414 -15.52683 -15.17447 -14.98300 -14.56510 -14.30335 -14.16438 -13.74326 -13.65490 -13.62056 -13.43401 -13.13833 -12.98504 -12.88533 -12.70497 -12.42022 -12.25901 -12.21613 -12.15709 -12.04384 -11.88227 -11.69581 -11.67027 -11.43236 -10.79786 -10.44510 -9.52273 -8.97825 -8.49638 -7.82062 -5.28372 -0.03523 0.35227 1.45841 1.48226 1.56040 1.57176 2.13766 2.39329 2.47971 2.85911 3.28509 3.55833 3.62784 3.76245 3.80058 3.89931 3.93208 4.03392 4.20609 4.29166 4.36919 4.43921 4.44062 4.50331 4.54011 4.60051 4.70637 4.75719 4.78674 4.83895 4.86360 4.92225 4.94988 5.10135 5.19075 5.29307 5.40032 5.40396 5.52513 5.70554 5.71365 5.77290 5.91727 6.16132 6.24613 6.64482 7.04692 7.69202 8.32874 9.20154 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.003781 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.024427 B = 7402.919726 C = 8956.563400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.132 4.132 3 C -0.146 4.146 4 C -0.057 4.057 5 C -0.113 4.113 6 C -0.163 4.163 7 C 0.078 3.922 8 O -0.336 6.336 9 C 0.017 3.983 10 C 0.078 3.922 11 O -0.310 6.310 12 C 0.087 3.913 13 H 0.090 0.910 14 C -0.121 4.121 15 C 0.156 3.844 16 N -0.623 5.623 17 C -0.247 4.247 18 H 0.078 0.922 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.985 3.015 22 H -0.283 1.283 23 H -0.272 1.272 24 H -0.289 1.289 25 C 0.120 3.880 26 C -0.176 4.176 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.003 0.997 40 H 0.084 0.916 41 H 0.251 0.749 42 H 0.019 0.981 43 H 0.031 0.969 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 -24.181 -5.419 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.150 4.150 3 C -0.164 4.164 4 C -0.057 4.057 5 C -0.131 4.131 6 C -0.181 4.181 7 C 0.032 3.968 8 O -0.250 6.250 9 C -0.077 4.077 10 C 0.033 3.967 11 O -0.224 6.224 12 C 0.030 3.970 13 H 0.108 0.892 14 C -0.159 4.159 15 C 0.031 3.969 16 N -0.350 5.350 17 C -0.376 4.376 18 H 0.096 0.904 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.812 3.188 22 H -0.210 1.210 23 H -0.197 1.197 24 H -0.215 1.215 25 C -0.006 4.006 26 C -0.195 4.195 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.177 0.823 33 H 0.185 0.815 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.021 0.979 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.038 0.962 43 H 0.049 0.951 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.643 -23.792 -5.339 24.527 hybrid contribution -0.311 1.016 0.732 1.291 sum -2.954 -22.776 -4.607 23.424 Atomic orbital electron populations 1.20926 0.91573 1.03609 1.02395 1.23617 0.97111 0.97689 0.96549 1.21598 0.90970 0.99395 1.04441 1.18967 0.94033 0.92151 1.00595 1.21295 0.93170 0.98065 1.00587 1.21291 0.95271 0.96216 1.05308 1.18605 0.83343 0.91796 1.03035 1.86158 1.15856 1.33954 1.89070 1.23366 0.98716 0.83107 1.02488 1.18605 0.90724 0.84853 1.02552 1.86208 1.35742 1.12174 1.88272 1.23341 0.94741 0.82630 0.96288 0.89199 1.23027 0.98695 0.92735 1.01484 1.21837 0.95431 0.95113 0.84482 1.44673 1.76457 1.00727 1.13156 1.19438 1.36405 0.88854 0.92890 0.90370 1.25659 1.01666 0.97601 1.00479 1.69989 1.52244 1.10087 1.27267 0.84995 0.77389 0.77917 0.78488 1.20978 1.19653 1.21536 1.21794 0.97623 0.85385 0.95753 1.21341 0.91588 0.99832 1.06742 0.91152 0.90198 0.91406 0.85297 0.87046 0.82279 0.81471 0.91055 0.86984 0.91410 0.91454 0.88475 0.97926 0.89778 0.93951 0.96249 0.95134 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 10.18 71.24 0.73 -0.89 16 2 C -0.13 -2.11 9.68 24.53 0.24 -1.88 16 3 C -0.15 -3.17 9.55 23.64 0.23 -2.95 16 4 C -0.06 -1.45 5.87 -20.12 -0.12 -1.57 16 5 C -0.11 -2.33 9.39 22.52 0.21 -2.12 16 6 C -0.16 -3.47 9.02 22.31 0.20 -3.27 16 7 C 0.08 2.29 6.70 22.63 0.15 2.44 16 8 O -0.34 -9.75 10.27 -78.99 -0.81 -10.57 16 9 C 0.02 0.28 9.81 113.37 1.11 1.39 16 10 C 0.08 2.68 6.63 22.53 0.15 2.83 16 11 O -0.31 -12.28 9.65 -79.53 -0.77 -13.04 16 12 C 0.09 3.46 2.77 31.78 0.09 3.54 16 13 H 0.09 3.28 6.58 -2.39 -0.02 3.26 16 14 C -0.12 -5.00 6.82 32.06 0.22 -4.78 16 15 C 0.16 8.01 5.91 86.93 0.51 8.52 16 16 N -0.62 -34.12 3.39 -691.54 -2.35 -36.47 16 17 C -0.25 -14.47 10.27 84.03 0.86 -13.61 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 20 N -0.95 -56.89 10.08 21.65 0.22 -56.67 16 21 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 C 0.12 5.58 6.51 86.73 0.56 6.14 16 26 C -0.18 -5.52 8.50 22.60 0.19 -5.32 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.13 1.58 6.03 -2.91 -0.02 1.56 16 31 H 0.11 2.49 8.05 -2.91 -0.02 2.47 16 32 H 0.16 2.12 6.15 -2.91 -0.02 2.10 16 33 H 0.17 2.28 6.27 -2.91 -0.02 2.26 16 34 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 37 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.08 4.84 5.85 -2.39 -0.01 4.82 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.02 0.95 8.06 -2.39 -0.02 0.93 16 43 H 0.03 1.37 7.43 -2.39 -0.02 1.36 16 44 H 0.13 4.18 5.30 -2.91 -0.02 4.17 16 Total: -1.00 -71.74 355.55 5.12 -66.63 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.00 Total: 16.35 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 5.80 Total: -14.59 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -2.13 Total: -93.14 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.58 Total: -23.61 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -71.74 5.12 -66.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229247550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.870 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds