Wall clock time and date at job start Tue Mar 31 2020 09:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32600 * 119.99943 * 2 1 4 4 C 1.47776 * 120.00095 * 179.97438 * 3 2 1 5 5 C 1.39556 * 120.06717 * 359.97438 * 4 3 2 6 6 C 1.37954 * 120.00630 * 179.97438 * 5 4 3 7 7 C 1.38688 * 120.14148 * 0.02562 * 6 5 4 8 8 O 1.35957 * 119.93422 * 179.97438 * 7 6 5 9 9 C 1.42896 * 116.99504 * 359.97438 * 8 7 6 10 10 C 1.39282 * 120.14036 * 359.95722 * 7 6 5 11 11 O 1.35997 * 120.00683 * 180.02562 * 10 7 6 12 12 C 1.42901 * 116.99926 * 185.85604 * 11 10 7 13 13 H 1.09000 * 110.89041 * 32.31757 * 12 11 10 14 14 C 1.55157 * 111.00296 * 156.20327 * 12 11 10 15 15 C 1.54324 * 102.93952 * 153.57436 * 14 12 11 16 16 N 1.47022 * 107.27356 * 337.80565 * 15 14 12 17 17 C 1.36938 * 125.64524 * 178.90098 * 16 15 14 18 18 H 1.08005 * 119.99661 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00220 * 0.02792 * 17 16 15 20 20 N 1.31616 * 120.00490 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99779 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46894 * 120.00085 * 21 19 17 24 24 H 1.48496 * 109.47221 * 239.99846 * 21 19 17 25 25 C 1.47463 * 108.72365 * 358.97727 * 16 15 14 26 26 C 1.38284 * 119.98929 * 0.29643 * 10 7 6 27 27 H 1.09004 * 109.47237 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47579 * 300.00189 * 1 2 3 29 29 H 1.09006 * 109.47450 * 60.00648 * 1 2 3 30 30 H 1.07995 * 120.00220 * 179.97438 * 2 1 3 31 31 H 1.07995 * 119.99837 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99816 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.92799 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47185 * 299.99041 * 9 8 7 35 35 H 1.08999 * 109.47432 * 59.99596 * 9 8 7 36 36 H 1.09000 * 109.46802 * 179.97438 * 9 8 7 37 37 H 1.08995 * 110.72111 * 271.93811 * 14 12 11 38 38 H 1.08999 * 110.71838 * 35.21380 * 14 12 11 39 39 H 1.09000 * 109.88401 * 97.22578 * 15 14 12 40 40 H 1.09003 * 109.88097 * 218.23588 * 15 14 12 41 41 H 0.96993 * 120.00549 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.34605 * 265.25463 * 25 16 15 43 43 H 1.08999 * 110.41071 * 142.91589 * 25 16 15 44 44 H 1.08004 * 120.07174 * 179.72767 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1699 1.1484 0.0000 4 6 3.6477 1.1484 0.0006 5 6 4.3469 -0.0594 0.0017 6 6 5.7265 -0.0579 0.0017 7 6 6.4216 1.1423 0.0011 8 8 7.7811 1.1388 0.0016 9 6 8.4265 -0.1361 0.0033 10 6 5.7298 2.3511 -0.0003 11 8 6.4141 3.5264 -0.0014 12 6 5.6460 4.7245 0.1271 13 1 4.7632 4.5560 0.7438 14 6 6.5099 5.8806 0.6967 15 6 5.8115 7.1398 0.1415 16 7 5.0450 6.7273 -1.0433 17 6 4.2651 7.5472 -1.8145 18 1 3.7391 7.1459 -2.6682 19 6 4.1504 8.8941 -1.4990 20 7 4.7910 9.3832 -0.4584 21 14 3.0870 10.0127 -2.5514 22 1 2.4781 9.2242 -3.6527 23 1 2.0127 10.6052 -1.7147 24 1 3.9244 11.0977 -3.1230 25 6 5.2534 5.2841 -1.2631 26 6 4.3469 2.3562 0.0050 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 2.0469 -0.9352 0.0004 31 1 1.6299 2.0836 -0.0004 32 1 3.8080 -0.9953 0.0025 33 1 6.2663 -0.9932 0.0029 34 1 8.1320 -0.6913 0.8939 35 1 8.1325 -0.6934 -0.8861 36 1 9.5075 0.0040 0.0031 37 1 6.4891 5.8768 1.7864 38 1 7.5339 5.8139 0.3292 39 1 5.1386 7.5524 0.8932 40 1 6.5570 7.8846 -0.1373 41 1 4.7106 10.3243 -0.2377 42 1 6.0595 5.1222 -1.9786 43 1 4.3336 4.8164 -1.6144 44 1 3.8092 3.2928 0.0083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229247551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:31 Heat of formation + Delta-G solvation = -21.486104 kcal Electronic energy + Delta-G solvation = -24507.231125 eV Core-core repulsion = 21004.917316 eV Total energy + Delta-G solvation = -3502.313808 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 24.62 seconds Orbital eigenvalues (eV) -41.63145 -40.01518 -38.66158 -37.85156 -35.37850 -34.29260 -31.60402 -31.49409 -30.72305 -29.19969 -28.44526 -26.81287 -26.44989 -23.96008 -23.17481 -22.16844 -21.57860 -20.37190 -19.51956 -18.99070 -18.10515 -17.40914 -16.86380 -16.75655 -16.47242 -16.17057 -15.76495 -15.50780 -15.29069 -15.00984 -14.52929 -14.20781 -14.16550 -13.95615 -13.76771 -13.61572 -13.41260 -13.12792 -12.94069 -12.90264 -12.71458 -12.37433 -12.23436 -12.18693 -12.16256 -12.00837 -11.92191 -11.72790 -11.58936 -11.49455 -10.76102 -10.43982 -9.51241 -8.99447 -8.48889 -7.89182 -5.27176 -0.03085 0.35540 1.45626 1.46990 1.56319 1.57567 2.10578 2.39829 2.48805 2.86316 3.29758 3.58581 3.62137 3.75976 3.80924 3.89639 3.93873 4.03737 4.21344 4.28667 4.37510 4.45097 4.45175 4.50326 4.53777 4.60214 4.71460 4.76606 4.77370 4.81283 4.86308 4.91150 4.97213 5.10418 5.19924 5.29816 5.38996 5.40856 5.55198 5.66864 5.70842 5.77667 5.91971 6.10062 6.19006 6.64656 7.03961 7.68146 8.32821 9.21539 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.003937 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.701990 B = 7109.862082 C = 8966.838344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.132 4.132 3 C -0.147 4.147 4 C -0.057 4.057 5 C -0.113 4.113 6 C -0.162 4.162 7 C 0.079 3.921 8 O -0.335 6.335 9 C 0.017 3.983 10 C 0.079 3.921 11 O -0.308 6.308 12 C 0.083 3.917 13 H 0.087 0.913 14 C -0.123 4.123 15 C 0.188 3.812 16 N -0.623 5.623 17 C -0.249 4.249 18 H 0.083 0.917 19 C -0.061 4.061 20 N -0.950 5.950 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.122 3.878 26 C -0.177 4.177 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.110 0.890 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.017 0.983 41 H 0.250 0.750 42 H 0.021 0.979 43 H 0.047 0.953 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -24.985 3.307 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.149 4.149 3 C -0.165 4.165 4 C -0.057 4.057 5 C -0.131 4.131 6 C -0.180 4.180 7 C 0.033 3.967 8 O -0.249 6.249 9 C -0.077 4.077 10 C 0.034 3.966 11 O -0.221 6.221 12 C 0.026 3.974 13 H 0.104 0.896 14 C -0.161 4.161 15 C 0.063 3.937 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.100 0.900 19 C -0.254 4.254 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.004 4.004 26 C -0.196 4.196 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.128 0.872 32 H 0.177 0.823 33 H 0.186 0.814 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.913 -24.596 3.277 24.830 hybrid contribution -0.445 1.243 -0.499 1.411 sum -1.358 -23.353 2.778 23.557 Atomic orbital electron populations 1.20926 0.91624 1.03610 1.02367 1.23614 0.97079 0.97685 0.96551 1.21602 0.91062 0.99350 1.04445 1.18957 0.93975 0.92184 1.00611 1.21295 0.93212 0.98009 1.00574 1.21291 0.95222 0.96261 1.05273 1.18583 0.83361 0.91717 1.02989 1.86156 1.15780 1.33932 1.89061 1.23367 0.98726 0.83115 1.02484 1.18576 0.90605 0.84834 1.02571 1.86158 1.35671 1.12164 1.88118 1.23476 0.94642 0.82323 0.96941 0.89560 1.22855 0.99300 0.92735 1.01226 1.20930 0.92786 0.91985 0.87975 1.44635 1.55094 1.03917 1.31401 1.19489 1.20861 0.90251 1.07107 0.89954 1.25687 1.01856 0.98198 0.99691 1.70161 1.47049 1.13151 1.29445 0.84956 0.77682 0.78416 0.77912 1.19041 1.21479 1.21735 1.21972 0.98174 0.85032 0.95259 1.21318 0.91731 0.99774 1.06799 0.90149 0.91247 0.91408 0.85212 0.87216 0.82294 0.81427 0.91139 0.91362 0.86944 0.88883 0.90655 0.95693 0.96515 0.94096 0.96111 0.93494 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 10.18 71.23 0.73 -0.95 16 2 C -0.13 -2.15 9.68 24.53 0.24 -1.91 16 3 C -0.15 -3.25 9.55 23.64 0.23 -3.02 16 4 C -0.06 -1.46 5.87 -20.12 -0.12 -1.57 16 5 C -0.11 -2.31 9.39 22.52 0.21 -2.09 16 6 C -0.16 -3.39 9.02 22.31 0.20 -3.19 16 7 C 0.08 2.27 6.70 22.63 0.15 2.42 16 8 O -0.33 -9.40 10.27 -79.03 -0.81 -10.22 16 9 C 0.02 0.27 9.81 113.37 1.11 1.38 16 10 C 0.08 2.69 6.69 22.53 0.15 2.84 16 11 O -0.31 -11.88 9.73 -79.48 -0.77 -12.65 16 12 C 0.08 3.31 2.81 31.99 0.09 3.40 16 13 H 0.09 3.29 6.23 -2.39 -0.01 3.28 16 14 C -0.12 -5.01 6.69 31.78 0.21 -4.80 16 15 C 0.19 9.72 5.37 86.73 0.47 10.18 16 16 N -0.62 -33.78 3.40 -691.88 -2.35 -36.13 16 17 C -0.25 -14.39 10.28 84.03 0.86 -13.53 16 18 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 19 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 20 N -0.95 -57.69 10.31 21.65 0.22 -57.47 16 21 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 C 0.12 5.54 6.86 86.85 0.60 6.14 16 26 C -0.18 -5.56 8.67 22.60 0.20 -5.37 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.13 1.60 6.03 -2.91 -0.02 1.59 16 31 H 0.11 2.56 8.05 -2.91 -0.02 2.53 16 32 H 0.16 2.10 6.15 -2.91 -0.02 2.08 16 33 H 0.17 2.20 6.27 -2.91 -0.02 2.18 16 34 H 0.07 0.82 7.66 -2.38 -0.02 0.81 16 35 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.02 1.39 7.38 -2.39 -0.02 1.38 16 40 H 0.02 0.95 7.51 -2.39 -0.02 0.94 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 2.06 7.80 -2.39 -0.02 2.04 16 44 H 0.13 4.23 5.64 -2.91 -0.02 4.21 16 Total: -1.00 -71.77 357.14 5.10 -66.68 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.99 Total: 14.63 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 5.79 Total: -13.14 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -2.13 Total: -93.59 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.58 Total: -22.86 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -71.77 5.10 -66.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229247551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.192 kcal (2) G-P(sol) polarization free energy of solvation -71.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.62 seconds