Wall clock time and date at job start Tue Mar 31 2020 09:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32605 * 119.99755 * 2 1 4 4 C 1.47774 * 119.99550 * 180.02562 * 3 2 1 5 5 C 1.39558 * 120.07124 * 359.97438 * 4 3 2 6 6 C 1.37954 * 120.00623 * 179.75229 * 5 4 3 7 7 C 1.38691 * 120.14044 * 359.97107 * 6 5 4 8 8 O 1.35954 * 119.92857 * 180.02562 * 7 6 5 9 9 C 1.42901 * 117.00123 * 0.02562 * 8 7 6 10 10 C 1.39284 * 120.13839 * 359.97438 * 7 6 5 11 11 O 1.35997 * 119.99940 * 180.02562 * 10 7 6 12 12 C 1.42903 * 116.99960 * 186.22041 * 11 10 7 13 13 C 1.53927 * 113.73789 * 255.86268 * 12 11 10 14 14 N 1.48183 * 86.10269 * 221.95719 * 13 12 11 15 15 C 1.46904 * 111.07621 * 137.51771 * 14 13 12 16 16 C 1.50708 * 109.46706 * 70.56530 * 15 14 13 17 17 H 1.07994 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99486 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99586 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47113 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46984 * 120.00060 * 20 18 16 23 23 H 1.48501 * 109.47190 * 239.99952 * 20 18 16 24 24 C 1.47960 * 90.80061 * 24.59784 * 14 13 12 25 25 C 1.38273 * 119.99533 * 0.06452 * 10 7 6 26 26 H 1.09001 * 109.47034 * 59.99664 * 1 2 3 27 27 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46903 * 300.00119 * 1 2 3 29 29 H 1.07999 * 120.00129 * 180.02562 * 2 1 3 30 30 H 1.07999 * 120.00116 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.99764 * 359.72505 * 5 4 3 32 32 H 1.08001 * 119.92725 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.46940 * 299.99754 * 9 8 7 34 34 H 1.08997 * 109.47194 * 59.99615 * 9 8 7 35 35 H 1.09004 * 109.47054 * 180.02562 * 9 8 7 36 36 H 1.09004 * 112.93181 * 27.42817 * 12 11 10 37 37 H 1.09004 * 113.76146 * 336.23673 * 13 12 11 38 38 H 1.08996 * 113.76390 * 107.59795 * 13 12 11 39 39 H 1.08996 * 109.47288 * 190.56466 * 15 14 13 40 40 H 1.08997 * 109.47112 * 310.56839 * 15 14 13 41 41 H 0.96997 * 119.99899 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.76178 * 221.08750 * 24 14 13 43 43 H 1.08998 * 113.75871 * 89.72103 * 24 14 13 44 44 H 1.08001 * 120.07631 * 179.97438 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1700 1.1484 0.0000 4 6 3.6477 1.1484 -0.0006 5 6 4.3470 -0.0594 -0.0006 6 6 5.7265 -0.0579 -0.0063 7 6 6.4216 1.1423 -0.0126 8 8 7.7811 1.1387 -0.0187 9 6 8.4266 -0.1362 -0.0188 10 6 5.7297 2.3511 -0.0138 11 8 6.4141 3.5263 -0.0206 12 6 5.6474 4.7244 0.1166 13 6 5.4698 5.5006 -1.2007 14 7 5.7198 6.7207 -0.3978 15 6 6.6111 7.6474 -1.1084 16 6 5.8780 8.2512 -2.2786 17 1 4.8527 7.9746 -2.4745 18 6 6.5167 9.1569 -3.0991 19 7 7.7655 9.4932 -2.8608 20 14 5.6079 9.9059 -4.5491 21 1 4.2254 9.3661 -4.5991 22 1 5.5584 11.3819 -4.3932 23 1 6.3178 9.5646 -5.8080 24 6 6.4670 5.9318 0.6065 25 6 4.3470 2.3562 -0.0073 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.0470 -0.9353 -0.0004 30 1 1.6300 2.0837 0.0004 31 1 3.8081 -0.9953 0.0043 32 1 6.2664 -0.9933 -0.0058 33 1 8.1363 -0.6904 0.8737 34 1 8.1282 -0.6944 -0.9062 35 1 9.5076 0.0038 -0.0236 36 1 4.7178 4.5733 0.6655 37 1 6.2444 5.2949 -1.9396 38 1 4.4621 5.4430 -1.6121 39 1 6.9274 8.4396 -0.4299 40 1 7.4861 7.1060 -1.4680 41 1 8.2146 10.1306 -3.4378 42 1 6.2544 6.2181 1.6366 43 1 7.5337 5.8524 0.3975 44 1 3.8092 3.2928 -0.0078 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229248096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:12 Heat of formation + Delta-G solvation = 5.068125 kcal Electronic energy + Delta-G solvation = -24029.113390 eV Core-core repulsion = 20527.951059 eV Total energy + Delta-G solvation = -3501.162331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65877 -39.36388 -37.88562 -36.89921 -34.56763 -32.85024 -30.71966 -30.27258 -29.02637 -27.83211 -26.07803 -25.69547 -25.09368 -23.07890 -22.32227 -21.19117 -19.62033 -19.24810 -18.54813 -17.16070 -16.60696 -16.25639 -15.92339 -15.59286 -15.27675 -14.86190 -14.65785 -14.40888 -14.02870 -13.87630 -13.60888 -13.26079 -13.21721 -12.91577 -12.42152 -12.30392 -12.08874 -12.02929 -11.85998 -11.69071 -11.58069 -11.43066 -11.21089 -10.94085 -10.87750 -10.65388 -10.27016 -10.15708 -9.71319 -9.63732 -9.15892 -8.52040 -8.50411 -7.87185 -7.56004 -6.05346 -4.07372 0.83621 1.30226 2.37984 3.21453 3.30352 3.33778 3.37599 3.42852 3.78319 4.41497 4.51000 4.58514 4.72543 4.81060 4.87819 4.88476 5.01542 5.03835 5.13528 5.14800 5.26129 5.30948 5.33811 5.35249 5.38084 5.40335 5.56775 5.69761 5.79517 6.04062 6.07713 6.13477 6.14314 6.21820 6.36664 6.42174 6.45252 6.60791 6.61829 6.71251 7.14808 7.21654 7.60956 7.70808 7.85288 8.07669 8.38882 8.99752 9.57080 11.06020 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.003304 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.462435 B = 8471.915822 C = 9885.056981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.157 4.157 3 C -0.114 4.114 4 C -0.054 4.054 5 C -0.119 4.119 6 C -0.173 4.173 7 C 0.094 3.906 8 O -0.303 6.303 9 C 0.027 3.973 10 C 0.115 3.885 11 O -0.293 6.293 12 C 0.042 3.958 13 C 0.008 3.992 14 N -0.474 5.474 15 C 0.162 3.838 16 C -0.511 4.511 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.009 3.991 25 C -0.164 4.164 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.002 0.998 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 -23.099 7.591 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.054 4.054 5 C -0.137 4.137 6 C -0.192 4.192 7 C 0.049 3.951 8 O -0.217 6.217 9 C -0.068 4.068 10 C 0.069 3.931 11 O -0.206 6.206 12 C -0.015 4.015 13 C -0.121 4.121 14 N -0.198 5.198 15 C 0.036 3.964 16 C -0.549 4.549 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.120 4.120 25 C -0.182 4.182 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.175 -22.342 7.697 24.696 hybrid contribution 0.248 -0.104 -1.158 1.189 sum -6.927 -22.446 6.540 24.384 Atomic orbital electron populations 1.20840 0.92805 1.02323 1.02178 1.23312 0.96120 0.97928 1.00159 1.21612 0.91677 0.98586 1.01349 1.18698 0.93031 0.92284 1.01415 1.20893 0.93063 0.97468 1.02258 1.20920 0.95042 0.96080 1.07142 1.18398 0.82886 0.91595 1.02265 1.86213 1.15768 1.30864 1.88826 1.23047 0.98269 0.84567 1.00928 1.18218 0.89894 0.85048 0.99953 1.86324 1.35599 1.11777 1.86864 1.24957 0.95844 0.81203 0.99490 1.24267 1.02642 0.90325 0.94908 1.68615 1.35070 1.07426 1.08732 1.20227 0.90813 0.91572 0.93753 1.21115 0.98996 1.24559 1.10260 0.91905 1.24996 0.94928 0.96584 0.98053 1.69965 1.10882 1.33858 1.38901 0.86424 0.79889 0.78952 0.82078 1.19638 1.20926 1.21032 1.24135 0.98217 0.90277 0.99374 1.21260 0.91885 0.99117 1.05954 0.91469 0.92072 0.91520 0.87057 0.86372 0.85658 0.84939 0.92917 0.92848 0.88273 0.88199 0.90379 0.89941 0.94703 0.98009 0.92887 0.89419 0.90699 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.18 36.01 0.37 -0.47 16 2 C -0.16 -1.33 9.68 -36.21 -0.35 -1.68 16 3 C -0.11 -1.16 9.55 -37.59 -0.36 -1.52 16 4 C -0.05 -0.65 5.87 -105.01 -0.62 -1.26 16 5 C -0.12 -1.28 9.39 -39.19 -0.37 -1.65 16 6 C -0.17 -1.95 9.02 -39.52 -0.36 -2.30 16 7 C 0.09 1.34 6.70 -39.03 -0.26 1.08 16 8 O -0.30 -4.32 10.27 -34.27 -0.35 -4.67 16 9 C 0.03 0.24 9.81 101.05 0.99 1.23 16 10 C 0.12 1.79 6.68 -39.18 -0.26 1.53 16 11 O -0.29 -5.18 9.94 -34.41 -0.34 -5.52 16 12 C 0.04 0.71 3.77 -25.80 -0.10 0.61 16 13 C 0.01 0.15 7.32 -2.64 -0.02 0.13 16 14 N -0.47 -10.48 6.25 -239.79 -1.50 -11.98 16 15 C 0.16 4.33 4.58 -4.97 -0.02 4.30 16 16 C -0.51 -14.62 8.84 -34.43 -0.30 -14.92 16 17 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.01 0.17 7.81 -2.76 -0.02 0.14 16 25 C -0.16 -2.23 8.74 -39.07 -0.34 -2.57 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.11 0.84 6.03 -52.49 -0.32 0.52 16 30 H 0.12 1.12 8.05 -52.49 -0.42 0.69 16 31 H 0.13 1.04 6.15 -52.49 -0.32 0.72 16 32 H 0.13 1.11 6.27 -52.49 -0.33 0.78 16 33 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 34 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.48 6.10 -51.93 -0.32 1.16 16 37 H 0.08 1.69 7.79 -51.93 -0.40 1.29 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.00 0.06 7.70 -51.93 -0.40 -0.34 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.07 1.46 7.79 -51.93 -0.40 1.05 16 44 H 0.14 1.80 5.97 -52.49 -0.31 1.49 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -32.52 364.28 -9.64 -42.16 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.53 Total: -0.24 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.12 Total: -15.84 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.76 Total: -38.24 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.69 Total: -10.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.52 -9.64 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229248096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.226 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds