Wall clock time and date at job start Tue Mar 31 2020 09:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50704 * 109.46648 * 120.00028 * 2 1 3 5 5 C 1.39279 * 115.61697 * 299.99765 * 4 2 1 6 6 C 1.37938 * 129.01218 * 180.02562 * 5 4 2 7 7 C 1.39207 * 128.92643 * 0.02562 * 6 5 4 8 8 C 1.38204 * 128.56545 * 0.02562 * 7 6 5 9 9 O 1.35488 * 115.89014 * 179.97438 * 8 7 6 10 10 C 1.42906 * 116.99934 * 5.29468 * 9 8 7 11 11 H 1.08994 * 110.63891 * 39.95306 * 10 9 8 12 12 C 1.55158 * 110.72141 * 163.29279 * 10 9 8 13 13 C 1.54908 * 101.57921 * 153.86289 * 12 10 9 14 14 N 1.47423 * 104.83451 * 322.98716 * 13 12 10 15 15 C 1.36938 * 125.64904 * 204.08993 * 14 13 12 16 16 H 1.07999 * 119.99857 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99966 * 0.04939 * 15 14 13 18 18 N 1.31619 * 120.00140 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47528 * 59.99457 * 19 17 15 21 21 H 1.48497 * 109.47243 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46833 * 299.99557 * 19 17 15 23 23 C 1.47024 * 108.70235 * 24.13101 * 14 13 12 24 24 C 1.41813 * 128.22204 * 0.26024 * 8 7 6 25 25 O 1.22364 * 115.92694 * 179.73353 * 24 8 7 26 26 C 1.37696 * 115.61833 * 120.02341 * 4 2 1 27 27 H 1.08995 * 109.47617 * 300.00169 * 1 2 3 28 28 H 1.09005 * 109.46960 * 60.00441 * 1 2 3 29 29 H 1.09002 * 109.46721 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47137 * 239.99603 * 2 1 3 31 31 H 1.08997 * 109.47075 * 299.99885 * 3 2 1 32 32 H 1.09003 * 109.46942 * 59.99761 * 3 2 1 33 33 H 1.08997 * 109.46715 * 179.97438 * 3 2 1 34 34 H 1.08004 * 115.49464 * 0.02945 * 5 4 2 35 35 H 1.07998 * 115.53600 * 180.02562 * 6 5 4 36 36 H 1.07996 * 115.72062 * 179.97438 * 7 6 5 37 37 H 1.09002 * 111.00062 * 271.93561 * 12 10 9 38 38 H 1.08998 * 111.00134 * 35.78915 * 12 10 9 39 39 H 1.09005 * 110.36343 * 204.14670 * 13 12 10 40 40 H 1.09004 * 110.36813 * 81.83221 * 13 12 10 41 41 H 0.96998 * 120.00018 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.88126 * 239.52330 * 23 14 13 43 43 H 1.09004 * 110.01356 * 118.42540 * 23 14 13 44 44 H 1.08000 * 115.81828 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6409 -0.1570 2.4473 6 6 1.9379 -0.5763 3.7274 7 6 2.7070 -1.6623 4.1358 8 6 3.3667 -2.5929 3.3555 9 8 4.0470 -3.5528 4.0275 10 6 3.9132 -3.5673 5.4502 11 1 2.8845 -3.3552 5.7415 12 6 4.3835 -4.9266 6.0319 13 6 4.8058 -4.5216 7.4662 14 7 5.4164 -3.1880 7.3175 15 6 6.3280 -2.6278 8.1721 16 1 6.7173 -1.6400 7.9745 17 6 6.7519 -3.3297 9.2921 18 7 6.2775 -4.5335 9.5329 19 14 7.9960 -2.5658 10.4575 20 1 7.4443 -1.3038 11.0126 21 1 8.2816 -3.5117 11.5661 22 1 9.2516 -2.2749 9.7199 23 6 4.8838 -2.5588 6.1001 24 6 3.4263 -2.6673 1.9405 25 8 4.0851 -3.5902 1.4806 26 6 2.8164 -1.8186 0.9999 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.0183 0.7228 2.3790 35 1 1.5154 0.0203 4.5224 36 1 2.8014 -1.7948 5.2034 37 1 3.5650 -5.6462 6.0542 38 1 5.2316 -5.3191 5.4710 39 1 5.5336 -5.2302 7.8617 40 1 3.9336 -4.4690 8.1180 41 1 6.5735 -5.0239 10.3157 42 1 5.6989 -2.3330 5.4126 43 1 4.3505 -1.6433 6.3561 44 1 2.9901 -2.0642 -0.0374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229633802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:08 Heat of formation + Delta-G solvation = 7.818501 kcal Electronic energy + Delta-G solvation = -24587.223780 eV Core-core repulsion = 21086.180715 eV Total energy + Delta-G solvation = -3501.043065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.69604 -38.88211 -37.88711 -36.40090 -34.72131 -32.39710 -31.22598 -30.12890 -29.24654 -27.81120 -27.51558 -25.33403 -24.72335 -24.22867 -21.52234 -20.47196 -20.28095 -18.76626 -18.39345 -17.74317 -16.97995 -16.03091 -15.42943 -15.12237 -14.88024 -14.56707 -14.41774 -14.33761 -14.10464 -13.74121 -13.43893 -13.18564 -12.89803 -12.65728 -12.50958 -12.41248 -11.86754 -11.86106 -11.79731 -11.60745 -11.33605 -11.18409 -11.06136 -11.03331 -10.82147 -10.60598 -10.42255 -10.17007 -9.90096 -9.71249 -9.63897 -9.37035 -8.73502 -7.61802 -6.95974 -5.73972 -3.16978 0.03513 0.58668 3.05305 3.07460 3.37064 3.41347 3.42747 3.48450 4.17522 4.37229 4.41322 4.44981 4.62375 4.78784 4.83499 4.85809 5.05176 5.10385 5.16454 5.21633 5.25496 5.40718 5.45083 5.46602 5.48384 5.51666 5.59036 5.68838 5.79668 5.83654 5.86707 6.15099 6.16635 6.23427 6.29390 6.33951 6.38464 6.40806 6.49285 6.52239 7.29806 7.36846 7.52398 7.73810 7.82263 8.24936 9.11899 9.72008 10.34430 11.30392 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.003045 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.358472 B = 9192.866948 C = 9703.008033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.147 4.147 4 C 0.023 3.977 5 C -0.169 4.169 6 C -0.019 4.019 7 C -0.224 4.224 8 C 0.114 3.886 9 O -0.272 6.272 10 C 0.056 3.944 11 H 0.084 0.916 12 C -0.133 4.133 13 C 0.153 3.847 14 N -0.600 5.600 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.918 3.082 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.118 3.882 24 C 0.392 3.608 25 O -0.485 6.485 26 C -0.220 4.220 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.018 0.982 41 H 0.255 0.745 42 H 0.037 0.963 43 H 0.029 0.971 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.612 9.760 -16.079 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.204 4.204 4 C 0.023 3.977 5 C -0.187 4.187 6 C -0.037 4.037 7 C -0.244 4.244 8 C 0.063 3.937 9 O -0.181 6.181 10 C 0.000 4.000 11 H 0.101 0.899 12 C -0.172 4.172 13 C 0.028 3.972 14 N -0.327 5.327 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.571 5.571 19 Si 0.748 3.252 20 H -0.211 1.211 21 H -0.214 1.214 22 H -0.210 1.210 23 C -0.009 4.009 24 C 0.283 3.717 25 O -0.372 6.372 26 C -0.240 4.240 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.025 9.072 -16.150 22.645 hybrid contribution 0.380 0.709 0.896 1.204 sum -12.645 9.781 -15.254 22.096 Atomic orbital electron populations 1.21883 0.93716 1.02441 1.02292 1.20610 0.96599 0.96711 0.95648 1.21884 1.01655 0.94550 1.02292 1.20091 0.90816 0.91957 0.94886 1.20897 1.04449 1.02505 0.90847 1.21038 0.92522 0.93666 0.96473 1.21679 1.03449 0.97335 1.01911 1.22010 0.89583 0.88271 0.93796 1.86274 1.62544 1.47678 1.21634 1.23975 0.99700 1.00373 0.75916 0.89853 1.23222 1.01074 0.93250 0.99636 1.22030 0.97583 0.88872 0.88712 1.44361 1.48983 1.15324 1.24027 1.19030 1.15388 0.99595 1.01484 0.90361 1.24806 1.00361 0.96756 0.98486 1.69736 1.46608 1.11834 1.28894 0.86100 0.80920 0.77961 0.80193 1.21119 1.21448 1.21024 1.21767 0.94888 0.93780 0.90438 1.17069 0.82458 0.86487 0.85709 1.90942 1.35910 1.31008 1.79366 1.22525 1.03302 0.97590 1.00547 0.92072 0.92015 0.92226 0.89756 0.92002 0.92060 0.92155 0.85998 0.85731 0.84011 0.91203 0.90443 0.86675 0.96380 0.93442 0.94529 0.95350 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.95 37.16 0.33 -0.52 16 2 C -0.08 -0.54 2.92 -91.77 -0.27 -0.81 16 3 C -0.15 -0.90 8.95 37.16 0.33 -0.57 16 4 C 0.02 0.23 4.97 -104.43 -0.52 -0.29 16 5 C -0.17 -1.51 8.25 -39.30 -0.32 -1.84 16 6 C -0.02 -0.19 9.65 -39.33 -0.38 -0.57 16 7 C -0.22 -2.97 8.39 -39.23 -0.33 -3.30 16 8 C 0.11 1.85 6.74 -38.23 -0.26 1.59 16 9 O -0.27 -5.15 9.19 -39.31 -0.36 -5.51 16 10 C 0.06 1.04 2.75 -24.89 -0.07 0.97 16 11 H 0.08 1.35 6.42 -51.93 -0.33 1.02 16 12 C -0.13 -2.62 6.81 -24.58 -0.17 -2.79 16 13 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 14 N -0.60 -15.33 3.39 -170.07 -0.58 -15.91 16 15 C -0.23 -6.29 10.27 -15.06 -0.15 -6.45 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 19 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.12 2.49 6.31 -3.06 -0.02 2.47 16 24 C 0.39 6.37 6.73 -37.32 -0.25 6.12 16 25 O -0.49 -9.70 16.99 -16.57 -0.28 -9.99 16 26 C -0.22 -2.72 9.08 -38.88 -0.35 -3.08 16 27 H 0.06 0.33 6.91 -51.93 -0.36 -0.03 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.57 7.41 -51.93 -0.38 0.18 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.35 6.91 -51.93 -0.36 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 0.80 5.89 -52.48 -0.31 0.49 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.93 4.01 -52.49 -0.21 1.72 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.12 3.09 5.87 -51.93 -0.31 2.79 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 42 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 43 H 0.03 0.57 7.13 -51.93 -0.37 0.20 16 44 H 0.14 1.52 7.41 -52.49 -0.39 1.13 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -32.21 349.91 -9.31 -41.53 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.37 Total: -0.53 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -2.54 Total: -5.76 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.02 Total: -41.83 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.64 Total: -15.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.21 -9.31 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229633802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.345 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds