Wall clock time and date at job start Tue Mar 31 2020 09:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50704 * 109.46648 * 120.00028 * 2 1 3 5 5 C 1.39279 * 115.61697 * 299.99765 * 4 2 1 6 6 C 1.37938 * 129.01218 * 180.02562 * 5 4 2 7 7 C 1.39207 * 128.92643 * 0.02562 * 6 5 4 8 8 C 1.38204 * 128.56545 * 0.02562 * 7 6 5 9 9 O 1.35488 * 115.89014 * 179.97438 * 8 7 6 10 10 C 1.42906 * 116.99934 * 5.29468 * 9 8 7 11 11 H 1.08994 * 110.63891 * 39.95306 * 10 9 8 12 12 C 1.55158 * 110.72141 * 163.29279 * 10 9 8 13 13 C 1.54908 * 101.57921 * 153.86289 * 12 10 9 14 14 N 1.47423 * 104.83451 * 322.98716 * 13 12 10 15 15 C 1.36938 * 125.64904 * 204.08993 * 14 13 12 16 16 H 1.07999 * 119.99857 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99966 * 0.04939 * 15 14 13 18 18 N 1.31619 * 120.00140 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47528 * 59.99457 * 19 17 15 21 21 H 1.48497 * 109.47243 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46833 * 299.99557 * 19 17 15 23 23 C 1.47024 * 108.70235 * 24.13101 * 14 13 12 24 24 C 1.41813 * 128.22204 * 0.26024 * 8 7 6 25 25 O 1.22364 * 115.92694 * 179.73353 * 24 8 7 26 26 C 1.37696 * 115.61833 * 120.02341 * 4 2 1 27 27 H 1.08995 * 109.47617 * 300.00169 * 1 2 3 28 28 H 1.09005 * 109.46960 * 60.00441 * 1 2 3 29 29 H 1.09002 * 109.46721 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47137 * 239.99603 * 2 1 3 31 31 H 1.08997 * 109.47075 * 299.99885 * 3 2 1 32 32 H 1.09003 * 109.46942 * 59.99761 * 3 2 1 33 33 H 1.08997 * 109.46715 * 179.97438 * 3 2 1 34 34 H 1.08004 * 115.49464 * 0.02945 * 5 4 2 35 35 H 1.07998 * 115.53600 * 180.02562 * 6 5 4 36 36 H 1.07996 * 115.72062 * 179.97438 * 7 6 5 37 37 H 1.09002 * 111.00062 * 271.93561 * 12 10 9 38 38 H 1.08998 * 111.00134 * 35.78915 * 12 10 9 39 39 H 1.09005 * 110.36343 * 204.14670 * 13 12 10 40 40 H 1.09004 * 110.36813 * 81.83221 * 13 12 10 41 41 H 0.96998 * 120.00018 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.88126 * 239.52330 * 23 14 13 43 43 H 1.09004 * 110.01356 * 118.42540 * 23 14 13 44 44 H 1.08000 * 115.81828 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6409 -0.1570 2.4473 6 6 1.9379 -0.5763 3.7274 7 6 2.7070 -1.6623 4.1358 8 6 3.3667 -2.5929 3.3555 9 8 4.0470 -3.5528 4.0275 10 6 3.9132 -3.5673 5.4502 11 1 2.8845 -3.3552 5.7415 12 6 4.3835 -4.9266 6.0319 13 6 4.8058 -4.5216 7.4662 14 7 5.4164 -3.1880 7.3175 15 6 6.3280 -2.6278 8.1721 16 1 6.7173 -1.6400 7.9745 17 6 6.7519 -3.3297 9.2921 18 7 6.2775 -4.5335 9.5329 19 14 7.9960 -2.5658 10.4575 20 1 7.4443 -1.3038 11.0126 21 1 8.2816 -3.5117 11.5661 22 1 9.2516 -2.2749 9.7199 23 6 4.8838 -2.5588 6.1001 24 6 3.4263 -2.6673 1.9405 25 8 4.0851 -3.5902 1.4806 26 6 2.8164 -1.8186 0.9999 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.0183 0.7228 2.3790 35 1 1.5154 0.0203 4.5224 36 1 2.8014 -1.7948 5.2034 37 1 3.5650 -5.6462 6.0542 38 1 5.2316 -5.3191 5.4710 39 1 5.5336 -5.2302 7.8617 40 1 3.9336 -4.4690 8.1180 41 1 6.5735 -5.0239 10.3157 42 1 5.6989 -2.3330 5.4126 43 1 4.3505 -1.6433 6.3561 44 1 2.9901 -2.0642 -0.0374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229633802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:07 Heat of formation + Delta-G solvation = -9.820408 kcal Electronic energy + Delta-G solvation = -24587.988661 eV Core-core repulsion = 21086.180715 eV Total energy + Delta-G solvation = -3501.807946 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89404 -40.10205 -38.83095 -38.04739 -35.61573 -34.33850 -32.12024 -31.51895 -30.77526 -29.45465 -27.95257 -26.88737 -25.80095 -25.60526 -22.60942 -22.27984 -21.43266 -19.95309 -19.51471 -18.92545 -18.77217 -17.19919 -16.78467 -16.57849 -16.16541 -15.94288 -15.74416 -15.39451 -15.04476 -14.78385 -14.70055 -14.37156 -14.18674 -13.83270 -13.77614 -13.53187 -13.10325 -13.01903 -12.97552 -12.69939 -12.66317 -12.50293 -12.34830 -12.11864 -12.07794 -12.02686 -11.81262 -11.70299 -11.59989 -11.45745 -10.82881 -10.79209 -10.36272 -8.99506 -8.71727 -7.83054 -5.29127 -0.96499 -0.45928 1.46112 1.49653 1.55988 1.84798 2.17266 2.38754 2.46891 3.23388 3.28110 3.43285 3.48751 3.58182 3.73682 3.78706 3.83352 3.89527 4.02542 4.11053 4.27784 4.37498 4.39606 4.49411 4.54986 4.70480 4.76885 4.80821 4.86680 4.86892 4.89573 4.96965 5.03080 5.18435 5.20435 5.26648 5.39460 5.41811 5.43216 5.46176 5.50979 5.57408 5.70053 6.07126 6.23180 6.71909 7.03349 7.68229 8.30965 9.19290 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.003045 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.358472 B = 9192.866948 C = 9703.008033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.147 4.147 4 C 0.038 3.962 5 C -0.141 4.141 6 C -0.032 4.032 7 C -0.187 4.187 8 C 0.061 3.939 9 O -0.302 6.302 10 C 0.073 3.927 11 H 0.111 0.889 12 C -0.125 4.125 13 C 0.157 3.843 14 N -0.622 5.622 15 C -0.246 4.246 16 H 0.082 0.918 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.984 3.016 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.118 3.882 24 C 0.381 3.619 25 O -0.555 6.555 26 C -0.232 4.232 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.009 0.991 41 H 0.251 0.749 42 H 0.018 0.982 43 H 0.049 0.951 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.274 13.335 -16.701 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 C -0.204 4.204 4 C 0.037 3.963 5 C -0.159 4.159 6 C -0.050 4.050 7 C -0.207 4.207 8 C 0.013 3.987 9 O -0.214 6.214 10 C 0.017 3.983 11 H 0.128 0.872 12 C -0.163 4.163 13 C 0.033 3.967 14 N -0.350 5.350 15 C -0.375 4.375 16 H 0.099 0.901 17 C -0.255 4.255 18 N -0.597 5.597 19 Si 0.812 3.188 20 H -0.199 1.199 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.008 4.008 24 C 0.278 3.722 25 O -0.448 6.448 26 C -0.251 4.251 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.159 0.841 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.725 12.697 -16.800 26.282 hybrid contribution 1.027 -0.143 0.977 1.425 sum -14.698 12.555 -15.823 24.980 Atomic orbital electron populations 1.21904 0.92150 1.02445 1.03742 1.20701 0.97683 0.97071 0.94116 1.21910 1.01036 0.93664 1.03754 1.20551 0.88437 0.90376 0.96890 1.21491 1.02088 1.02376 0.89898 1.21479 0.92171 0.92998 0.98322 1.21922 1.00925 0.96419 1.01444 1.22135 0.92790 0.89921 0.93871 1.86225 1.64547 1.49545 1.21046 1.23694 1.00076 0.98098 0.76413 0.87154 1.23033 1.01565 0.94917 0.96792 1.21772 0.96133 0.87852 0.90971 1.44642 1.49129 1.16260 1.24940 1.19402 1.16039 0.99952 1.02091 0.90057 1.25668 1.02331 0.97333 1.00181 1.69985 1.47684 1.12923 1.29072 0.85073 0.78568 0.77310 0.77874 1.19923 1.21702 1.20611 1.21871 0.95081 0.95182 0.88675 1.17555 0.81991 0.86363 0.86261 1.90904 1.39871 1.34025 1.80035 1.22506 1.04269 0.98391 0.99946 0.90824 0.90481 0.92982 0.89700 0.90409 0.90853 0.93241 0.81827 0.81809 0.84113 0.88221 0.92065 0.90087 0.97272 0.93969 0.96407 0.93355 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.95 71.98 0.64 -0.40 16 2 C -0.08 -0.80 2.92 -11.54 -0.03 -0.83 16 3 C -0.15 -1.16 8.95 71.98 0.64 -0.52 16 4 C 0.04 0.62 4.97 -19.74 -0.10 0.52 16 5 C -0.14 -1.81 8.25 22.45 0.19 -1.63 16 6 C -0.03 -0.50 9.65 22.43 0.22 -0.28 16 7 C -0.19 -4.58 8.39 22.49 0.19 -4.39 16 8 C 0.06 2.01 6.74 23.15 0.16 2.16 16 9 O -0.30 -11.90 9.19 -67.66 -0.62 -12.53 16 10 C 0.07 2.71 2.75 31.78 0.09 2.80 16 11 H 0.11 3.42 6.42 -2.39 -0.02 3.41 16 12 C -0.12 -5.03 6.81 31.99 0.22 -4.82 16 13 C 0.16 7.80 5.89 86.85 0.51 8.31 16 14 N -0.62 -32.59 3.39 -691.98 -2.35 -34.94 16 15 C -0.25 -13.90 10.27 84.03 0.86 -13.04 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 18 N -0.95 -56.01 10.09 21.65 0.22 -55.79 16 19 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.12 5.03 6.31 86.73 0.55 5.58 16 24 C 0.38 12.96 6.73 23.73 0.16 13.12 16 25 O -0.56 -24.10 16.99 13.70 0.23 -23.86 16 26 C -0.23 -5.64 9.08 22.72 0.21 -5.44 16 27 H 0.07 0.36 6.91 -2.39 -0.02 0.34 16 28 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.92 7.41 -2.39 -0.02 0.90 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.41 6.91 -2.39 -0.02 0.40 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.16 0.92 5.89 -2.91 -0.02 0.90 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.14 3.48 4.01 -2.91 -0.01 3.47 16 37 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.08 4.58 5.87 -2.38 -0.01 4.57 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.02 0.83 8.06 -2.39 -0.02 0.81 16 43 H 0.05 1.87 7.13 -2.38 -0.02 1.85 16 44 H 0.14 3.20 7.41 -2.91 -0.02 3.18 16 Total: -1.00 -75.70 349.91 5.47 -70.22 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.00 Total: 11.41 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 4.96 Total: -1.90 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -2.13 Total: -90.73 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.39 Total: -36.39 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.70 5.47 -70.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229633802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.404 kcal (2) G-P(sol) polarization free energy of solvation -75.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds