Wall clock time and date at job start Tue Mar 31 2020 10:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00137 * 2 1 4 4 C 1.50697 * 120.00028 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47129 * 354.77689 * 4 2 1 6 6 C 1.53010 * 109.47167 * 234.78093 * 4 2 1 7 7 C 1.50701 * 109.47290 * 114.77919 * 4 2 1 8 8 O 1.21279 * 119.99901 * 4.84125 * 7 4 2 9 9 N 1.34771 * 120.00049 * 184.83866 * 7 4 2 10 10 C 1.46503 * 119.99912 * 179.97438 * 9 7 4 11 11 C 1.50696 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.38329 * 119.96615 * 269.97771 * 11 10 9 13 13 C 1.38277 * 120.13985 * 180.02562 * 12 11 10 14 14 C 1.38131 * 120.06589 * 359.67932 * 13 12 11 15 15 C 1.38850 * 119.93089 * 0.59451 * 14 13 12 16 16 O 1.35750 * 120.07033 * 179.70107 * 15 14 13 17 17 C 1.34834 * 116.99675 * 354.12749 * 16 15 14 18 18 H 1.07994 * 120.00126 * 5.03488 * 17 16 15 19 19 C 1.38659 * 119.99801 * 185.03980 * 17 16 15 20 20 N 1.31560 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47453 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47299 * 120.00357 * 21 19 17 24 24 H 1.48503 * 109.46733 * 239.99602 * 21 19 17 25 25 C 1.38081 * 119.96637 * 90.00101 * 11 10 9 26 26 H 1.08002 * 120.00130 * 5.07604 * 1 2 3 27 27 H 1.07997 * 119.99930 * 185.06677 * 1 2 3 28 28 H 1.09002 * 109.47288 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46954 * 299.99578 * 3 2 1 30 30 H 1.09006 * 109.46917 * 59.99207 * 3 2 1 31 31 H 1.09001 * 109.47088 * 179.97438 * 5 4 2 32 32 H 1.08998 * 109.47362 * 300.00196 * 5 4 2 33 33 H 1.09000 * 109.46907 * 60.00208 * 5 4 2 34 34 H 1.08996 * 109.46871 * 299.99848 * 6 4 2 35 35 H 1.08998 * 109.47149 * 59.99910 * 6 4 2 36 36 H 1.09001 * 109.46834 * 180.02562 * 6 4 2 37 37 H 0.96997 * 120.00398 * 359.97438 * 9 7 4 38 38 H 1.08999 * 109.46775 * 60.00185 * 10 9 7 39 39 H 1.09000 * 109.46915 * 300.00456 * 10 9 7 40 40 H 1.08000 * 119.92879 * 0.02562 * 12 11 10 41 41 H 1.08000 * 119.96432 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03096 * 180.31847 * 14 13 12 43 43 H 0.96996 * 120.00197 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03472 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 1.0744 -2.4650 0.1324 6 6 3.0390 -1.3303 1.1791 7 6 2.8304 -1.4430 -1.2894 8 8 2.8419 -0.5307 -2.0884 9 7 3.5034 -2.5800 -1.5549 10 6 4.2485 -2.7142 -2.8092 11 6 4.9055 -4.0694 -2.8606 12 6 6.1816 -4.2382 -2.3540 13 6 6.7881 -5.4801 -2.3997 14 6 6.1184 -6.5577 -2.9458 15 6 4.8396 -6.3902 -3.4603 16 8 4.1812 -7.4459 -4.0031 17 6 4.8683 -8.5999 -4.1229 18 1 5.8673 -8.6778 -3.7202 19 6 4.2922 -9.6865 -4.7633 20 7 3.0750 -9.5917 -5.2535 21 14 5.2438 -11.2853 -4.9286 22 1 6.5797 -11.1338 -4.2980 23 1 4.4980 -12.3774 -4.2532 24 1 5.4105 -11.6156 -6.3668 25 6 4.2334 -5.1413 -3.4137 26 1 -0.5400 0.9316 -0.0828 27 1 -0.5400 -0.9316 0.0826 28 1 3.1352 1.1059 0.0005 29 1 1.8002 1.8766 -0.8900 30 1 1.8001 1.8767 0.8900 31 1 1.6194 -3.4089 0.1324 32 1 0.5197 -2.3652 1.0654 33 1 0.3795 -2.4470 -0.7071 34 1 3.7436 -0.5040 1.0852 35 1 2.4843 -1.2306 2.1121 36 1 3.5843 -2.2741 1.1792 37 1 3.4945 -3.3095 -0.9157 38 1 5.0115 -1.9378 -2.8633 39 1 3.5641 -2.6104 -3.6512 40 1 6.7053 -3.3984 -1.9218 41 1 7.7847 -5.6086 -2.0038 42 1 6.5906 -7.5284 -2.9766 43 1 2.6721 -10.3517 -5.7018 44 1 3.2371 -5.0089 -3.8090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261438290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:34 Heat of formation + Delta-G solvation = -31.837568 kcal Electronic energy + Delta-G solvation = -24136.501456 eV Core-core repulsion = 20633.738774 eV Total energy + Delta-G solvation = -3502.762682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 36.01 seconds Orbital eigenvalues (eV) -40.39412 -39.14034 -37.17629 -36.51933 -34.58865 -32.41502 -32.21873 -30.51574 -29.13455 -28.74279 -26.26210 -25.98916 -25.19169 -23.68841 -21.74704 -20.93979 -20.57324 -18.55862 -17.60496 -17.04831 -16.45890 -16.24327 -15.45433 -15.13977 -15.03605 -14.65208 -14.47936 -14.18970 -13.95954 -13.64105 -13.49451 -13.20326 -12.85677 -12.62802 -12.47960 -12.43946 -12.38383 -12.22754 -12.10259 -11.87340 -11.68826 -11.40725 -11.12558 -10.97883 -10.87645 -10.81992 -10.71237 -10.48108 -9.76710 -9.43196 -9.12611 -8.96106 -8.91278 -8.26069 -7.35515 -6.51447 -4.11001 1.84839 2.09374 2.24590 2.69399 3.07553 3.09713 3.15186 3.45270 3.90535 4.32467 4.46792 4.58191 4.71283 4.86927 4.95382 5.04913 5.09590 5.25636 5.33844 5.42828 5.50300 5.50844 5.53039 5.55046 5.62478 5.72461 5.79848 5.82428 5.86515 5.93287 5.95863 6.01058 6.05438 6.22732 6.47389 6.49637 6.53300 6.73350 6.79083 6.97306 7.16326 7.24763 7.33203 7.58119 7.69193 7.92761 8.27622 8.94020 9.62492 10.66369 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.002786 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.483533 B =10046.453017 C =10586.381428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C -0.110 4.110 4 C -0.049 4.049 5 C -0.146 4.146 6 C -0.138 4.138 7 C 0.524 3.476 8 O -0.538 6.538 9 N -0.719 5.719 10 C 0.168 3.832 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.151 3.849 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.171 4.171 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.402 0.598 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 14.021 12.267 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.091 4.091 3 C -0.166 4.166 4 C -0.052 4.052 5 C -0.203 4.203 6 C -0.196 4.196 7 C 0.309 3.691 8 O -0.414 6.414 9 N -0.370 5.370 10 C 0.045 3.955 11 C -0.073 4.073 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.246 4.246 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.191 4.191 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.674 14.494 11.451 18.484 hybrid contribution 0.559 -1.310 0.123 1.430 sum -0.115 13.184 11.574 17.543 Atomic orbital electron populations 1.23779 0.95232 1.02274 1.02727 1.21239 0.94842 0.94063 0.98952 1.20745 1.00184 0.94278 1.01408 1.19847 0.96088 0.95240 0.94020 1.21981 0.98924 0.96441 1.02985 1.21846 0.98437 1.02764 0.96505 1.20353 0.78914 0.82126 0.87693 1.90682 1.62287 1.39564 1.48914 1.46137 1.51381 1.17604 1.21890 1.20149 0.94877 0.94227 0.86236 1.19272 0.94738 0.93294 1.00024 1.20475 0.95873 0.97272 1.07864 1.20747 0.98429 0.92576 0.97657 1.21246 0.96602 0.99982 1.06724 1.19318 0.90675 0.88448 0.91861 1.83983 1.37968 1.17053 1.68968 1.21374 1.00109 0.87000 1.38435 0.88981 1.25303 0.96299 0.99147 0.95737 1.70044 1.13255 1.31575 1.34645 0.85641 0.79079 0.80170 0.78503 1.19088 1.20101 1.20089 1.20090 1.01093 0.90402 1.07517 0.88342 0.87799 0.92107 0.91329 0.92125 0.91531 0.91078 0.91519 0.91794 0.91265 0.91658 0.76292 0.91007 0.90917 0.87532 0.87288 0.85458 0.91982 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 13.34 29.02 0.39 -1.59 16 2 C -0.09 -0.97 4.39 -101.07 -0.44 -1.41 16 3 C -0.11 -1.11 8.77 36.01 0.32 -0.80 16 4 C -0.05 -0.51 0.69 -156.81 -0.11 -0.62 16 5 C -0.15 -1.35 6.99 37.16 0.26 -1.09 16 6 C -0.14 -1.17 8.20 37.16 0.30 -0.87 16 7 C 0.52 7.09 6.39 -10.99 -0.07 7.02 16 8 O -0.54 -9.08 15.29 5.56 0.08 -9.00 16 9 N -0.72 -9.34 5.37 -61.47 -0.33 -9.67 16 10 C 0.17 2.46 5.80 -5.19 -0.03 2.43 16 11 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 12 C -0.20 -3.14 9.70 -39.53 -0.38 -3.52 16 13 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 14 C -0.23 -4.67 9.17 -39.39 -0.36 -5.03 16 15 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 16 O -0.18 -4.88 9.76 0.04 0.00 -4.88 16 17 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 18 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.78 13.67 55.48 0.76 -24.02 16 21 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 25 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 26 H 0.10 0.86 8.05 -52.49 -0.42 0.44 16 27 H 0.10 0.92 5.71 -52.49 -0.30 0.62 16 28 H 0.06 0.65 6.76 -51.93 -0.35 0.30 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.59 7.31 -51.93 -0.38 0.21 16 32 H 0.07 0.54 7.66 -51.93 -0.40 0.15 16 33 H 0.07 0.67 7.34 -51.93 -0.38 0.29 16 34 H 0.06 0.56 6.89 -51.93 -0.36 0.20 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 37 H 0.40 4.69 7.36 -40.82 -0.30 4.39 16 38 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -31.08 363.86 -6.93 -38.01 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.38 Total: 8.00 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.52 Total: -18.95 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.43 Total: -33.70 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.08 -6.93 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261438290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.168 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 36.02 seconds