Wall clock time and date at job start Tue Mar 31 2020 10:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00137 * 2 1 4 4 C 1.50697 * 120.00028 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47129 * 354.77689 * 4 2 1 6 6 C 1.53010 * 109.47167 * 234.78093 * 4 2 1 7 7 C 1.50701 * 109.47290 * 114.77919 * 4 2 1 8 8 O 1.21279 * 119.99901 * 4.84125 * 7 4 2 9 9 N 1.34771 * 120.00049 * 184.83866 * 7 4 2 10 10 C 1.46503 * 119.99912 * 179.97438 * 9 7 4 11 11 C 1.50696 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.38329 * 119.96615 * 269.97771 * 11 10 9 13 13 C 1.38277 * 120.13985 * 180.02562 * 12 11 10 14 14 C 1.38131 * 120.06589 * 359.67932 * 13 12 11 15 15 C 1.38850 * 119.93089 * 0.59451 * 14 13 12 16 16 O 1.35750 * 120.07033 * 179.70107 * 15 14 13 17 17 C 1.34834 * 116.99675 * 354.12749 * 16 15 14 18 18 H 1.07994 * 120.00126 * 5.03488 * 17 16 15 19 19 C 1.38659 * 119.99801 * 185.03980 * 17 16 15 20 20 N 1.31560 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47453 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47299 * 120.00357 * 21 19 17 24 24 H 1.48503 * 109.46733 * 239.99602 * 21 19 17 25 25 C 1.38081 * 119.96637 * 90.00101 * 11 10 9 26 26 H 1.08002 * 120.00130 * 5.07604 * 1 2 3 27 27 H 1.07997 * 119.99930 * 185.06677 * 1 2 3 28 28 H 1.09002 * 109.47288 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46954 * 299.99578 * 3 2 1 30 30 H 1.09006 * 109.46917 * 59.99207 * 3 2 1 31 31 H 1.09001 * 109.47088 * 179.97438 * 5 4 2 32 32 H 1.08998 * 109.47362 * 300.00196 * 5 4 2 33 33 H 1.09000 * 109.46907 * 60.00208 * 5 4 2 34 34 H 1.08996 * 109.46871 * 299.99848 * 6 4 2 35 35 H 1.08998 * 109.47149 * 59.99910 * 6 4 2 36 36 H 1.09001 * 109.46834 * 180.02562 * 6 4 2 37 37 H 0.96997 * 120.00398 * 359.97438 * 9 7 4 38 38 H 1.08999 * 109.46775 * 60.00185 * 10 9 7 39 39 H 1.09000 * 109.46915 * 300.00456 * 10 9 7 40 40 H 1.08000 * 119.92879 * 0.02562 * 12 11 10 41 41 H 1.08000 * 119.96432 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03096 * 180.31847 * 14 13 12 43 43 H 0.96996 * 120.00197 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03472 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 1.0744 -2.4650 0.1324 6 6 3.0390 -1.3303 1.1791 7 6 2.8304 -1.4430 -1.2894 8 8 2.8419 -0.5307 -2.0884 9 7 3.5034 -2.5800 -1.5549 10 6 4.2485 -2.7142 -2.8092 11 6 4.9055 -4.0694 -2.8606 12 6 6.1816 -4.2382 -2.3540 13 6 6.7881 -5.4801 -2.3997 14 6 6.1184 -6.5577 -2.9458 15 6 4.8396 -6.3902 -3.4603 16 8 4.1812 -7.4459 -4.0031 17 6 4.8683 -8.5999 -4.1229 18 1 5.8673 -8.6778 -3.7202 19 6 4.2922 -9.6865 -4.7633 20 7 3.0750 -9.5917 -5.2535 21 14 5.2438 -11.2853 -4.9286 22 1 6.5797 -11.1338 -4.2980 23 1 4.4980 -12.3774 -4.2532 24 1 5.4105 -11.6156 -6.3668 25 6 4.2334 -5.1413 -3.4137 26 1 -0.5400 0.9316 -0.0828 27 1 -0.5400 -0.9316 0.0826 28 1 3.1352 1.1059 0.0005 29 1 1.8002 1.8766 -0.8900 30 1 1.8001 1.8767 0.8900 31 1 1.6194 -3.4089 0.1324 32 1 0.5197 -2.3652 1.0654 33 1 0.3795 -2.4470 -0.7071 34 1 3.7436 -0.5040 1.0852 35 1 2.4843 -1.2306 2.1121 36 1 3.5843 -2.2741 1.1792 37 1 3.4945 -3.3095 -0.9157 38 1 5.0115 -1.9378 -2.8633 39 1 3.5641 -2.6104 -3.6512 40 1 6.7053 -3.3984 -1.9218 41 1 7.7847 -5.6086 -2.0038 42 1 6.5906 -7.5284 -2.9766 43 1 2.6721 -10.3517 -5.7018 44 1 3.2371 -5.0089 -3.8090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261438290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:58 Heat of formation + Delta-G solvation = -50.595184 kcal Electronic energy + Delta-G solvation = -24137.314847 eV Core-core repulsion = 20633.738774 eV Total energy + Delta-G solvation = -3503.576073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 11.40 seconds Orbital eigenvalues (eV) -41.45203 -40.75393 -38.61770 -37.65659 -35.84014 -34.29635 -33.20480 -31.82612 -30.72551 -29.47204 -27.65672 -27.00236 -26.75058 -24.61395 -23.27407 -22.49658 -21.61104 -19.86849 -19.18698 -18.59951 -17.46822 -17.22193 -16.83178 -16.59287 -16.12752 -16.04035 -15.98404 -15.50671 -15.29562 -15.00116 -14.73662 -14.33898 -13.99517 -13.91237 -13.75842 -13.47846 -13.32149 -13.20090 -13.05946 -13.04077 -13.02418 -12.62216 -12.56347 -12.37574 -12.28367 -12.08946 -11.88871 -11.60575 -11.21919 -10.87241 -10.78854 -10.12937 -9.93366 -9.73236 -9.03992 -8.47555 -6.16075 0.37209 0.69733 1.26312 1.35800 1.43626 1.53809 1.63408 2.16937 2.34058 2.85935 3.15349 3.39259 3.52819 3.73982 3.83675 3.92538 4.08385 4.10067 4.29661 4.35210 4.40438 4.52098 4.64985 4.66626 4.67751 4.72151 4.77465 4.84252 4.85440 4.90537 5.00874 5.07622 5.11626 5.14851 5.24551 5.24732 5.28408 5.36606 5.61653 5.69872 5.70873 5.71551 5.95300 6.01311 6.15751 6.53120 6.97435 7.21040 7.77620 8.75775 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.002786 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.483533 B =10046.453017 C =10586.381428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.107 4.107 4 C -0.044 4.044 5 C -0.146 4.146 6 C -0.135 4.135 7 C 0.522 3.478 8 O -0.574 6.574 9 N -0.712 5.712 10 C 0.174 3.826 11 C -0.058 4.058 12 C -0.168 4.168 13 C -0.068 4.068 14 C -0.234 4.234 15 C 0.114 3.886 16 O -0.232 6.232 17 C -0.411 4.411 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.249 1.249 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.182 4.182 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 15.163 14.616 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.111 4.111 3 C -0.163 4.163 4 C -0.047 4.047 5 C -0.203 4.203 6 C -0.193 4.193 7 C 0.309 3.691 8 O -0.453 6.453 9 N -0.364 5.364 10 C 0.051 3.949 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.202 4.202 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.138 0.862 43 H 0.081 0.919 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.365 15.673 13.846 20.957 hybrid contribution -0.007 -1.314 -0.488 1.401 sum 1.359 14.359 13.358 19.659 Atomic orbital electron populations 1.23970 0.95105 1.03102 1.01464 1.21399 0.95328 0.94320 1.00091 1.20724 0.99635 0.94284 1.01698 1.19858 0.96343 0.95619 0.92901 1.22007 0.98663 0.96098 1.03529 1.21862 0.98135 1.03093 0.96172 1.20959 0.78403 0.81365 0.88375 1.90667 1.63525 1.40784 1.50352 1.46040 1.51112 1.17935 1.21337 1.20021 0.95064 0.93094 0.86771 1.19438 0.94998 0.93016 0.98425 1.20989 0.94901 0.98038 1.04774 1.21165 0.99777 0.91594 0.96094 1.21378 0.95855 1.01100 1.07044 1.19837 0.92240 0.88529 0.93060 1.83950 1.39777 1.18274 1.71920 1.21864 1.00719 0.87496 1.38673 0.87876 1.26583 0.97321 1.02981 0.95191 1.70191 1.15585 1.33001 1.37151 0.84532 0.78125 0.74932 0.78657 1.17264 1.19390 1.19600 1.20211 1.01064 0.90603 1.08309 0.87516 0.87057 0.92871 0.92681 0.90176 0.91184 0.89049 0.92767 0.92043 0.89583 0.90869 0.75324 0.89579 0.92239 0.83411 0.83288 0.86151 0.91885 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.56 13.34 67.78 0.90 -2.66 16 2 C -0.11 -2.20 4.39 -16.49 -0.07 -2.28 16 3 C -0.11 -2.03 8.77 71.24 0.62 -1.41 16 4 C -0.04 -0.84 0.69 -53.67 -0.04 -0.88 16 5 C -0.15 -2.43 6.99 71.98 0.50 -1.93 16 6 C -0.14 -1.92 8.20 71.99 0.59 -1.33 16 7 C 0.52 13.42 6.39 87.66 0.56 13.98 16 8 O -0.57 -19.01 15.29 -3.03 -0.05 -19.06 16 9 N -0.71 -17.23 5.37 -466.80 -2.51 -19.74 16 10 C 0.17 4.78 5.80 85.63 0.50 5.27 16 11 C -0.06 -1.83 5.25 -19.88 -0.10 -1.93 16 12 C -0.17 -4.68 9.70 22.30 0.22 -4.46 16 13 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 14 C -0.23 -9.52 9.17 22.39 0.21 -9.32 16 15 C 0.11 5.41 6.65 22.58 0.15 5.56 16 16 O -0.23 -13.65 9.76 -22.79 -0.22 -13.87 16 17 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 18 H 0.10 5.33 5.21 -2.91 -0.02 5.31 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 20 N -0.92 -55.97 13.67 21.62 0.30 -55.68 16 21 Si 1.02 42.02 29.55 68.60 2.03 44.04 16 22 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 C -0.18 -7.41 9.65 22.39 0.22 -7.20 16 26 H 0.11 1.69 8.05 -2.91 -0.02 1.67 16 27 H 0.11 1.78 5.71 -2.91 -0.02 1.76 16 28 H 0.05 1.07 6.76 -2.39 -0.02 1.05 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.11 7.31 -2.39 -0.02 1.09 16 32 H 0.09 1.16 7.66 -2.39 -0.02 1.14 16 33 H 0.05 1.04 7.34 -2.39 -0.02 1.02 16 34 H 0.06 0.91 6.89 -2.39 -0.02 0.90 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.91 7.91 -2.39 -0.02 0.90 16 37 H 0.41 8.66 7.36 -92.71 -0.68 7.97 16 38 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 39 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.12 4.99 5.64 -2.91 -0.02 4.98 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -72.26 363.86 5.46 -66.80 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.32 Total: 31.51 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 5.59 Total: -34.01 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.21 Total: -75.41 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.27 Total: -32.93 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -72.26 5.46 -66.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261438290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.205 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.40 seconds