Wall clock time and date at job start Tue Mar 31 2020 09:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46630 * 2 1 4 4 C 1.53001 * 109.46860 * 185.08139 * 3 2 1 5 5 C 1.50703 * 112.84630 * 289.62629 * 4 3 2 6 6 O 1.21291 * 119.99963 * 123.77908 * 5 4 3 7 7 N 1.34781 * 120.00076 * 303.77473 * 5 4 3 8 8 C 1.39993 * 119.99883 * 176.21390 * 7 5 4 9 9 C 1.38916 * 120.00040 * 27.48107 * 8 7 5 10 10 C 1.38002 * 119.99537 * 180.25065 * 9 8 7 11 11 C 1.38908 * 120.00539 * 359.51564 * 10 9 8 12 12 O 1.35772 * 120.00301 * 180.25278 * 11 10 9 13 13 C 1.34814 * 116.99924 * 354.85274 * 12 11 10 14 14 H 1.07998 * 120.00070 * 5.10701 * 13 12 11 15 15 C 1.38633 * 119.99784 * 185.10669 * 13 12 11 16 16 N 1.31571 * 119.99620 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00096 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46959 * 90.00441 * 17 15 13 19 19 H 1.48498 * 109.46948 * 210.00008 * 17 15 13 20 20 H 1.48498 * 109.47312 * 329.99939 * 17 15 13 21 21 C 1.38918 * 119.99784 * 0.22817 * 11 10 9 22 22 C 1.38002 * 120.00146 * 0.02562 * 21 11 10 23 23 C 1.53782 * 113.61535 * 60.81852 * 4 3 2 24 24 C 1.53959 * 87.01495 * 89.23032 * 23 4 3 25 25 C 1.53778 * 87.11333 * 25.36388 * 24 23 4 26 26 H 1.08993 * 109.47563 * 60.00202 * 1 2 3 27 27 H 1.09011 * 109.46711 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47231 * 299.99583 * 1 2 3 29 29 H 1.08998 * 109.47364 * 239.99948 * 2 1 3 30 30 H 1.08999 * 109.46716 * 119.99669 * 2 1 3 31 31 H 1.08997 * 109.47148 * 65.08277 * 3 2 1 32 32 H 1.08998 * 109.47005 * 305.07816 * 3 2 1 33 33 H 0.96998 * 119.99979 * 356.21438 * 7 5 4 34 34 H 1.08000 * 120.00704 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.99941 * 179.78558 * 10 9 8 36 36 H 0.97002 * 119.99654 * 180.02562 * 16 15 13 37 37 H 1.07992 * 119.99798 * 180.02562 * 21 11 10 38 38 H 1.07995 * 120.00134 * 180.02562 * 22 21 11 39 39 H 1.09002 * 113.61300 * 203.74601 * 23 4 3 40 40 H 1.08994 * 113.61644 * 334.65541 * 23 4 3 41 41 H 1.08995 * 113.54072 * 270.81024 * 24 23 4 42 42 H 1.09005 * 113.66249 * 139.92800 * 24 23 4 43 43 H 1.09001 * 113.61372 * 220.09126 * 25 24 23 44 44 H 1.08994 * 113.61919 * 89.18536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5646 1.4445 -0.1278 5 6 4.2563 0.9404 1.1126 6 8 5.0278 0.0073 1.0399 7 7 4.0178 1.5264 2.3026 8 6 4.5984 1.0089 3.4666 9 6 5.8011 0.3174 3.3947 10 6 6.3707 -0.1972 4.5415 11 6 5.7466 -0.0152 5.7690 12 8 6.3096 -0.5172 6.8980 13 6 7.4164 -1.2719 6.7465 14 1 7.8632 -1.3853 5.7698 15 6 7.9810 -1.9025 7.8444 16 7 9.0614 -2.6386 7.6966 17 14 7.2086 -1.7058 9.5339 18 1 6.2042 -2.7786 9.7469 19 1 8.2635 -1.8017 10.5746 20 1 6.5443 -0.3807 9.6232 21 6 4.5466 0.6808 5.8417 22 6 3.9742 1.1910 4.6943 23 6 4.0749 0.7949 -1.4249 24 6 3.9679 2.1887 -2.0700 25 6 4.1368 2.7704 -0.6565 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7528 1.9294 0.9320 32 1 1.6042 1.9819 -0.8410 33 1 3.4439 2.3068 2.3526 34 1 6.2886 0.1794 2.4409 35 1 7.3040 -0.7378 4.4851 36 1 9.4562 -3.0801 8.4648 37 1 4.0616 0.8227 6.7961 38 1 3.0415 1.7325 4.7508 39 1 5.0974 0.4238 -1.3544 40 1 3.3862 0.0633 -1.8471 41 1 2.9919 2.3903 -2.5113 42 1 4.7939 2.4249 -2.7408 43 1 3.4978 3.6312 -0.4594 44 1 5.1761 2.9403 -0.3755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319098656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:36 Heat of formation + Delta-G solvation = -24.506416 kcal Electronic energy + Delta-G solvation = -24487.383289 eV Core-core repulsion = 20984.938510 eV Total energy + Delta-G solvation = -3502.444779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03596 -39.26921 -38.11308 -36.41825 -34.45049 -33.90960 -32.29578 -30.26686 -29.20649 -27.78261 -26.01641 -25.38119 -24.67094 -22.59461 -21.76830 -21.62566 -20.45458 -18.79366 -17.92616 -17.57066 -16.98803 -16.60974 -15.72018 -15.51245 -14.87238 -14.64924 -14.28256 -13.99617 -13.87259 -13.76919 -13.73619 -13.38003 -12.75378 -12.64142 -12.56475 -12.35153 -12.26753 -12.22702 -11.77137 -11.71386 -11.61824 -11.38481 -11.32014 -10.96738 -10.88649 -10.72851 -10.60588 -10.36688 -10.22197 -9.68385 -9.49406 -9.10527 -8.74306 -8.26029 -6.99706 -6.38292 -4.03977 2.00560 2.14595 2.83291 3.23905 3.26695 3.29330 3.41876 4.10215 4.21623 4.25997 4.43402 4.50833 4.53200 4.76606 4.84727 4.88267 4.94135 5.04630 5.13491 5.29975 5.35125 5.40306 5.49927 5.54746 5.56728 5.59659 5.64353 5.70445 5.71249 5.84915 5.91422 6.02456 6.09320 6.11273 6.13980 6.18641 6.28647 6.62067 6.79141 6.91994 7.13119 7.34371 7.60496 7.72293 7.83368 8.05957 8.37073 8.96847 9.59073 10.69482 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.002996 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.511988 B = 9345.017366 C = 9749.569363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.091 4.091 4 C -0.106 4.106 5 C 0.522 3.478 6 O -0.522 6.522 7 N -0.657 5.657 8 C 0.047 3.953 9 C -0.078 4.078 10 C -0.205 4.205 11 C 0.148 3.852 12 O -0.218 6.218 13 C -0.388 4.388 14 H 0.107 0.893 15 C 0.062 3.938 16 N -0.880 5.880 17 Si 0.906 3.094 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.176 4.176 22 C -0.102 4.102 23 C -0.114 4.114 24 C -0.140 4.140 25 C -0.124 4.124 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.279 0.721 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 11.361 -16.981 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.128 4.128 4 C -0.109 4.109 5 C 0.309 3.691 6 O -0.398 6.398 7 N -0.301 5.301 8 C -0.046 4.046 9 C -0.098 4.098 10 C -0.225 4.225 11 C 0.096 3.904 12 O -0.123 6.123 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.141 4.141 16 N -0.518 5.518 17 Si 0.732 3.268 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.196 4.196 22 C -0.122 4.122 23 C -0.152 4.152 24 C -0.178 4.178 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.776 10.560 -16.709 24.679 hybrid contribution -0.413 0.292 0.829 0.971 sum -15.188 10.852 -15.880 24.508 Atomic orbital electron populations 1.21756 0.95621 1.01794 1.01604 1.21568 0.95819 0.96336 1.02898 1.21395 0.90938 0.97897 1.02619 1.22209 0.96392 0.99081 0.93222 1.20414 0.82137 0.82486 0.84093 1.90656 1.35433 1.28260 1.85459 1.43251 1.49597 1.31441 1.05777 1.17423 0.95662 1.06297 0.85197 1.21194 0.93061 0.96514 0.99058 1.21268 1.03120 1.06461 0.91649 1.19154 0.91778 0.93113 0.86357 1.83560 1.40785 1.59891 1.28050 1.20779 1.01196 1.25879 0.98542 0.87613 1.24467 0.95474 0.94779 0.99335 1.69660 1.19717 1.30193 1.32240 0.86174 0.78905 0.79914 0.81846 1.19915 1.20829 1.18370 1.19967 0.96021 1.05371 0.98202 1.20301 0.98914 1.02051 0.90921 1.22925 1.02783 0.96486 0.92975 1.22854 1.02178 0.96624 0.96107 1.22942 1.01705 0.95154 0.96381 0.92836 0.92655 0.92736 0.91406 0.91747 0.91365 0.90683 0.76449 0.84424 0.84647 0.91086 0.86138 0.86681 0.88782 0.90703 0.89971 0.91048 0.90641 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.15 5.66 -26.73 -0.15 -1.30 16 3 C -0.09 -0.70 4.56 -26.73 -0.12 -0.82 16 4 C -0.11 -1.01 0.79 -154.85 -0.12 -1.14 16 5 C 0.52 7.25 6.27 -10.98 -0.07 7.18 16 6 O -0.52 -9.49 12.99 5.55 0.07 -9.42 16 7 N -0.66 -8.78 5.23 -9.82 -0.05 -8.83 16 8 C 0.05 0.82 6.43 -83.63 -0.54 0.28 16 9 C -0.08 -1.60 8.76 -39.42 -0.35 -1.94 16 10 C -0.21 -4.70 9.16 -39.42 -0.36 -5.06 16 11 C 0.15 3.49 6.65 -39.08 -0.26 3.23 16 12 O -0.22 -5.82 8.58 0.03 0.00 -5.82 16 13 C -0.39 -11.17 9.94 30.88 0.31 -10.86 16 14 H 0.11 3.13 5.43 -52.49 -0.28 2.85 16 15 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 16 N -0.88 -25.87 13.96 55.48 0.77 -25.09 16 17 Si 0.91 21.90 28.62 -169.99 -4.86 17.04 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 21 C -0.18 -3.46 9.99 -39.42 -0.39 -3.85 16 22 C -0.10 -1.69 9.94 -39.42 -0.39 -2.08 16 23 C -0.11 -1.08 6.76 -25.82 -0.17 -1.26 16 24 C -0.14 -1.00 7.74 -25.83 -0.20 -1.20 16 25 C -0.12 -0.97 7.20 -25.92 -0.19 -1.16 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.60 6.33 -51.93 -0.33 0.27 16 30 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 31 H 0.07 0.48 7.50 -51.93 -0.39 0.09 16 32 H 0.07 0.46 7.34 -51.93 -0.38 0.08 16 33 H 0.40 3.93 8.23 -40.82 -0.34 3.59 16 34 H 0.14 2.84 5.66 -52.49 -0.30 2.55 16 35 H 0.14 3.27 5.63 -52.49 -0.30 2.98 16 36 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.09 1.08 7.54 -51.93 -0.39 0.69 16 40 H 0.07 0.66 6.38 -51.93 -0.33 0.33 16 41 H 0.08 0.47 7.65 -51.93 -0.40 0.08 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 44 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -31.97 354.70 -7.81 -39.78 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.35 Total: 6.04 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.74 Total: -19.03 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.72 Total: -33.92 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.07 Total: -15.25 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.97 -7.81 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319098656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.275 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds