Wall clock time and date at job start Tue Mar 31 2020 09:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46630 * 2 1 4 4 C 1.53001 * 109.46860 * 185.08139 * 3 2 1 5 5 C 1.50703 * 112.84630 * 289.62629 * 4 3 2 6 6 O 1.21291 * 119.99963 * 123.77908 * 5 4 3 7 7 N 1.34781 * 120.00076 * 303.77473 * 5 4 3 8 8 C 1.39993 * 119.99883 * 176.21390 * 7 5 4 9 9 C 1.38916 * 120.00040 * 27.48107 * 8 7 5 10 10 C 1.38002 * 119.99537 * 180.25065 * 9 8 7 11 11 C 1.38908 * 120.00539 * 359.51564 * 10 9 8 12 12 O 1.35772 * 120.00301 * 180.25278 * 11 10 9 13 13 C 1.34814 * 116.99924 * 354.85274 * 12 11 10 14 14 H 1.07998 * 120.00070 * 5.10701 * 13 12 11 15 15 C 1.38633 * 119.99784 * 185.10669 * 13 12 11 16 16 N 1.31571 * 119.99620 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00096 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46959 * 90.00441 * 17 15 13 19 19 H 1.48498 * 109.46948 * 210.00008 * 17 15 13 20 20 H 1.48498 * 109.47312 * 329.99939 * 17 15 13 21 21 C 1.38918 * 119.99784 * 0.22817 * 11 10 9 22 22 C 1.38002 * 120.00146 * 0.02562 * 21 11 10 23 23 C 1.53782 * 113.61535 * 60.81852 * 4 3 2 24 24 C 1.53959 * 87.01495 * 89.23032 * 23 4 3 25 25 C 1.53778 * 87.11333 * 25.36388 * 24 23 4 26 26 H 1.08993 * 109.47563 * 60.00202 * 1 2 3 27 27 H 1.09011 * 109.46711 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47231 * 299.99583 * 1 2 3 29 29 H 1.08998 * 109.47364 * 239.99948 * 2 1 3 30 30 H 1.08999 * 109.46716 * 119.99669 * 2 1 3 31 31 H 1.08997 * 109.47148 * 65.08277 * 3 2 1 32 32 H 1.08998 * 109.47005 * 305.07816 * 3 2 1 33 33 H 0.96998 * 119.99979 * 356.21438 * 7 5 4 34 34 H 1.08000 * 120.00704 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.99941 * 179.78558 * 10 9 8 36 36 H 0.97002 * 119.99654 * 180.02562 * 16 15 13 37 37 H 1.07992 * 119.99798 * 180.02562 * 21 11 10 38 38 H 1.07995 * 120.00134 * 180.02562 * 22 21 11 39 39 H 1.09002 * 113.61300 * 203.74601 * 23 4 3 40 40 H 1.08994 * 113.61644 * 334.65541 * 23 4 3 41 41 H 1.08995 * 113.54072 * 270.81024 * 24 23 4 42 42 H 1.09005 * 113.66249 * 139.92800 * 24 23 4 43 43 H 1.09001 * 113.61372 * 220.09126 * 25 24 23 44 44 H 1.08994 * 113.61919 * 89.18536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5646 1.4445 -0.1278 5 6 4.2563 0.9404 1.1126 6 8 5.0278 0.0073 1.0399 7 7 4.0178 1.5264 2.3026 8 6 4.5984 1.0089 3.4666 9 6 5.8011 0.3174 3.3947 10 6 6.3707 -0.1972 4.5415 11 6 5.7466 -0.0152 5.7690 12 8 6.3096 -0.5172 6.8980 13 6 7.4164 -1.2719 6.7465 14 1 7.8632 -1.3853 5.7698 15 6 7.9810 -1.9025 7.8444 16 7 9.0614 -2.6386 7.6966 17 14 7.2086 -1.7058 9.5339 18 1 6.2042 -2.7786 9.7469 19 1 8.2635 -1.8017 10.5746 20 1 6.5443 -0.3807 9.6232 21 6 4.5466 0.6808 5.8417 22 6 3.9742 1.1910 4.6943 23 6 4.0749 0.7949 -1.4249 24 6 3.9679 2.1887 -2.0700 25 6 4.1368 2.7704 -0.6565 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7528 1.9294 0.9320 32 1 1.6042 1.9819 -0.8410 33 1 3.4439 2.3068 2.3526 34 1 6.2886 0.1794 2.4409 35 1 7.3040 -0.7378 4.4851 36 1 9.4562 -3.0801 8.4648 37 1 4.0616 0.8227 6.7961 38 1 3.0415 1.7325 4.7508 39 1 5.0974 0.4238 -1.3544 40 1 3.3862 0.0633 -1.8471 41 1 2.9919 2.3903 -2.5113 42 1 4.7939 2.4249 -2.7408 43 1 3.4978 3.6312 -0.4594 44 1 5.1761 2.9403 -0.3755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319098656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:35 Heat of formation + Delta-G solvation = -43.977074 kcal Electronic energy + Delta-G solvation = -24488.227600 eV Core-core repulsion = 20984.938510 eV Total energy + Delta-G solvation = -3503.289090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08958 -40.83164 -39.40941 -37.95364 -35.52106 -34.92057 -34.37946 -31.91008 -30.40029 -28.89834 -27.21831 -26.67462 -25.70222 -24.13077 -23.10302 -22.39883 -21.71942 -20.20601 -19.43931 -19.13003 -18.30728 -17.94430 -16.75853 -16.48854 -16.28929 -15.85927 -15.65820 -15.56813 -15.48003 -15.32058 -14.52312 -14.41909 -14.31323 -14.21021 -13.96553 -13.48848 -13.34548 -13.24030 -13.12864 -12.88676 -12.76420 -12.52609 -12.35631 -12.11976 -11.99991 -11.96352 -11.60864 -11.44227 -11.26708 -11.20154 -11.03225 -10.73109 -10.42143 -9.88001 -8.65089 -8.50745 -6.23373 0.44711 0.50139 1.31407 1.36037 1.52835 1.62926 2.12470 2.28216 2.75342 3.03507 3.14194 3.36217 3.48088 3.73759 3.86127 3.92626 4.07749 4.11065 4.18753 4.30716 4.42248 4.44312 4.59961 4.68360 4.73479 4.76536 4.79751 4.85767 4.90681 5.00714 5.04133 5.07245 5.11713 5.18414 5.22756 5.28442 5.35443 5.37389 5.46476 5.48235 5.53833 5.58738 5.73175 5.90421 6.18831 6.54267 6.82730 7.22854 7.55500 8.61337 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.002996 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.511988 B = 9345.017366 C = 9749.569363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.086 4.086 4 C -0.100 4.100 5 C 0.517 3.483 6 O -0.571 6.571 7 N -0.645 5.645 8 C 0.073 3.927 9 C -0.097 4.097 10 C -0.223 4.223 11 C 0.109 3.891 12 O -0.240 6.240 13 C -0.402 4.402 14 H 0.073 0.927 15 C 0.007 3.993 16 N -0.927 5.927 17 Si 0.977 3.023 18 H -0.265 1.265 19 H -0.267 1.267 20 H -0.257 1.257 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.426 0.574 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.285 0.715 37 H 0.146 0.854 38 H 0.174 0.826 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.879 14.667 -17.755 30.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.123 4.123 4 C -0.103 4.103 5 C 0.306 3.694 6 O -0.450 6.450 7 N -0.290 5.290 8 C -0.021 4.021 9 C -0.117 4.117 10 C -0.243 4.243 11 C 0.059 3.941 12 O -0.147 6.147 13 C -0.478 4.478 14 H 0.091 0.909 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.799 3.201 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.184 4.184 22 C -0.103 4.103 23 C -0.165 4.165 24 C -0.162 4.162 25 C -0.156 4.156 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.264 0.736 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.164 0.836 38 H 0.192 0.808 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.274 13.922 -17.536 29.543 hybrid contribution 0.835 -0.644 0.714 1.273 sum -18.439 13.278 -16.822 28.272 Atomic orbital electron populations 1.21731 0.94142 1.01812 1.02731 1.21563 0.97098 0.97074 1.01063 1.21459 0.88798 0.97253 1.04775 1.22345 0.97586 1.00123 0.90248 1.21408 0.81213 0.81486 0.85248 1.90654 1.37590 1.30542 1.86171 1.43218 1.49337 1.32081 1.04365 1.17580 0.93849 1.03359 0.87321 1.21173 0.94832 0.98011 0.97648 1.21143 1.02600 1.07438 0.93076 1.19685 0.93728 0.94951 0.85713 1.83497 1.40587 1.61360 1.29282 1.20673 1.02402 1.27032 0.97705 0.90947 1.25373 0.95957 0.94334 1.03430 1.69757 1.21420 1.31849 1.33726 0.85125 0.78342 0.79915 0.76737 1.19005 1.19188 1.18120 1.20407 0.94071 1.03331 1.00546 1.20827 1.00082 1.00493 0.88919 1.22961 1.01179 0.98383 0.93980 1.22849 1.03768 0.93853 0.95765 1.22959 1.01288 0.95020 0.96364 0.91029 0.93332 0.92202 0.91956 0.95048 0.89837 0.87628 0.73560 0.85434 0.87976 0.90530 0.83642 0.80833 0.91894 0.90246 0.87337 0.90740 0.87536 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.13 -2.02 5.66 30.60 0.17 -1.85 16 3 C -0.09 -0.95 4.56 30.60 0.14 -0.81 16 4 C -0.10 -1.65 0.79 -52.40 -0.04 -1.70 16 5 C 0.52 13.79 6.27 87.66 0.55 14.34 16 6 O -0.57 -21.48 12.99 -3.06 -0.04 -21.52 16 7 N -0.64 -15.35 5.23 -303.37 -1.59 -16.94 16 8 C 0.07 2.40 6.43 38.16 0.25 2.65 16 9 C -0.10 -4.09 8.76 22.38 0.20 -3.89 16 10 C -0.22 -10.96 9.16 22.37 0.20 -10.75 16 11 C 0.11 5.27 6.65 22.59 0.15 5.42 16 12 O -0.24 -13.36 8.58 -22.82 -0.20 -13.56 16 13 C -0.40 -24.74 9.94 67.91 0.68 -24.06 16 14 H 0.07 4.78 5.43 -2.91 -0.02 4.76 16 15 C 0.01 0.42 5.49 84.83 0.47 0.88 16 16 N -0.93 -57.35 13.96 21.61 0.30 -57.05 16 17 Si 0.98 46.20 28.62 68.60 1.96 48.16 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 21 C -0.16 -6.10 9.99 22.38 0.22 -5.88 16 22 C -0.08 -2.44 9.94 22.38 0.22 -2.22 16 23 C -0.13 -2.26 6.76 31.18 0.21 -2.05 16 24 C -0.13 -1.35 7.74 31.18 0.24 -1.11 16 25 C -0.12 -1.44 7.20 31.12 0.22 -1.21 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 1.01 6.33 -2.39 -0.02 1.00 16 30 H 0.03 0.68 7.88 -2.39 -0.02 0.66 16 31 H 0.08 0.71 7.50 -2.39 -0.02 0.69 16 32 H 0.11 0.64 7.34 -2.39 -0.02 0.62 16 33 H 0.43 6.17 8.23 -92.71 -0.76 5.41 16 34 H 0.13 5.65 5.66 -2.91 -0.02 5.64 16 35 H 0.10 5.61 5.63 -2.91 -0.02 5.59 16 36 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 37 H 0.15 4.71 8.06 -2.91 -0.02 4.68 16 38 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.06 1.51 7.54 -2.39 -0.02 1.50 16 40 H 0.08 1.31 6.38 -2.39 -0.02 1.29 16 41 H 0.11 0.67 7.65 -2.39 -0.02 0.65 16 42 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.11 0.69 8.10 -2.39 -0.02 0.67 16 44 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 Total: -1.00 -77.72 354.70 5.29 -72.43 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.25 Total: 21.70 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 4.59 Total: -33.23 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.28 Total: -73.98 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.24 Total: -35.08 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.96 Total: 48.16 kcal Total: -77.72 5.29 -72.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319098656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.451 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds