Wall clock time and date at job start Tue Mar 31 2020 10:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99651 * 2 1 4 4 C 1.52998 * 109.47445 * 119.99782 * 3 2 1 5 5 C 1.53002 * 109.46960 * 239.99964 * 3 2 1 6 6 C 1.53004 * 109.47073 * 300.00020 * 5 3 2 7 7 C 1.50707 * 109.47166 * 359.97438 * 3 2 1 8 8 O 1.21273 * 120.00204 * 239.99898 * 7 3 2 9 9 N 1.34774 * 119.99327 * 60.00458 * 7 3 2 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 3 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06774 * 359.77134 * 13 12 11 15 15 C 1.38852 * 119.93464 * 0.50144 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.74702 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46908 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47373 * 240.00300 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 H 1.07994 * 120.00554 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99374 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00305 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47243 * 299.99974 * 4 3 2 30 30 H 1.09008 * 109.46638 * 59.99943 * 4 3 2 31 31 H 1.08998 * 109.47174 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47444 * 60.00023 * 5 3 2 33 33 H 1.09003 * 109.47208 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47153 * 180.02562 * 6 5 3 35 35 H 1.09006 * 109.46913 * 299.99756 * 6 5 3 36 36 H 1.08991 * 109.47218 * 59.99838 * 6 5 3 37 37 H 0.96993 * 120.00552 * 0.02562 * 9 7 3 38 38 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 39 39 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 40 40 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 41 41 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 42 42 H 1.08006 * 120.03757 * 180.27571 * 14 13 12 43 43 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3864 1.2492 5 6 2.9431 1.3862 -1.2493 6 6 3.9374 0.2233 -1.2492 7 6 1.0841 2.4506 -0.0006 8 8 1.0895 3.2525 -0.9103 9 7 0.2023 2.5837 1.0099 10 6 -0.7495 3.6975 1.0097 11 6 -1.6159 3.6182 2.2401 12 6 -2.8018 2.9070 2.2053 13 6 -3.5993 2.8314 3.3324 14 6 -3.2113 3.4623 4.4983 15 6 -2.0242 4.1817 4.5348 16 8 -1.6427 4.8071 5.6776 17 6 -2.5166 4.7929 6.7042 18 1 -3.4351 4.2304 6.6238 19 6 -2.2361 5.5003 7.8633 20 7 -1.1176 6.1859 7.9611 21 14 -3.4473 5.4812 9.2853 22 1 -4.6190 4.6424 8.9263 23 1 -2.7868 4.9183 10.4904 24 1 -3.8986 6.8671 9.5699 25 6 -1.2248 4.2549 3.4012 26 1 -0.5401 0.9352 -0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 2.3164 1.3286 2.1392 30 1 3.6514 0.5578 1.2492 31 1 3.4883 2.3302 1.2490 32 1 2.3165 1.3284 -2.1392 33 1 3.4884 2.3300 -1.2491 34 1 4.5644 0.2813 -2.1390 35 1 4.5641 0.2812 -0.3592 36 1 3.3925 -0.7206 -1.2492 37 1 0.1983 1.9425 1.7377 38 1 -1.3758 3.6399 0.1194 39 1 -0.2042 4.6413 1.0098 40 1 -3.1056 2.4098 1.2960 41 1 -4.5245 2.2751 3.3023 42 1 -3.8324 3.3993 5.3796 43 1 -0.9216 6.6811 8.7718 44 1 -0.2990 4.8103 3.4276 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320739569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:47 Heat of formation + Delta-G solvation = -45.028885 kcal Electronic energy + Delta-G solvation = -24276.715353 eV Core-core repulsion = 20773.380653 eV Total energy + Delta-G solvation = -3503.334700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 11.57 seconds Orbital eigenvalues (eV) -41.64087 -40.76938 -38.58226 -37.51141 -35.93967 -34.29788 -33.11060 -32.07133 -30.84369 -30.22495 -27.65622 -26.97882 -25.99622 -23.30537 -22.88247 -22.59809 -22.13706 -20.20475 -19.38608 -18.76054 -17.65066 -17.20020 -17.01224 -16.74246 -16.36656 -16.10568 -15.68494 -15.44324 -15.31404 -14.98045 -14.88478 -14.46422 -14.30518 -13.97332 -13.76843 -13.58641 -13.31912 -13.08221 -13.05179 -12.87279 -12.61376 -12.56854 -12.51892 -12.36933 -12.28552 -12.09052 -11.76305 -11.37501 -11.22477 -10.88158 -10.78739 -10.34219 -10.07003 -9.75945 -9.04448 -8.47739 -6.16268 0.37009 0.69337 1.33780 1.35613 1.43365 1.53629 1.56267 2.16610 2.20879 2.84437 3.14537 3.38307 3.57258 3.70786 3.80099 3.97907 4.06517 4.09714 4.28096 4.37143 4.41972 4.47986 4.51511 4.60537 4.64829 4.69575 4.71599 4.83286 4.98892 5.00174 5.06143 5.10340 5.11474 5.18985 5.24037 5.30421 5.33569 5.51518 5.60788 5.66192 5.69244 5.70461 5.77958 6.01026 6.15128 6.46739 6.97222 7.14496 7.77309 8.75582 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.002894 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.204702 B = 9672.127878 C =10128.969261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.048 4.048 4 C -0.141 4.141 5 C -0.094 4.094 6 C -0.149 4.149 7 C 0.521 3.479 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.171 3.829 11 C -0.058 4.058 12 C -0.168 4.168 13 C -0.068 4.068 14 C -0.234 4.234 15 C 0.114 3.886 16 O -0.232 6.232 17 C -0.412 4.412 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.250 1.250 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.182 4.182 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -15.217 -14.483 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.161 4.161 3 C -0.051 4.051 4 C -0.198 4.198 5 C -0.132 4.132 6 C -0.206 4.206 7 C 0.309 3.691 8 O -0.459 6.459 9 N -0.364 5.364 10 C 0.048 3.952 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.202 4.202 26 H 0.111 0.889 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.515 -14.380 -14.931 21.025 hybrid contribution -0.413 0.483 1.274 1.424 sum 3.102 -13.897 -13.657 19.730 Atomic orbital electron populations 1.24435 0.96494 1.03350 0.99978 1.22830 0.95623 0.96819 1.00793 1.20046 0.94563 0.91169 0.99295 1.21930 0.99703 1.03638 0.94561 1.21301 0.97046 0.99898 0.94992 1.21875 0.98560 0.97489 1.02707 1.21069 0.80832 0.86376 0.80852 1.90665 1.72067 1.45782 1.37420 1.46270 1.35024 1.29637 1.25438 1.20056 0.90089 0.90015 0.95085 1.19421 0.96057 0.97662 0.92742 1.20980 0.95000 1.03204 0.99490 1.21158 0.99545 0.96652 0.91239 1.21377 0.98561 1.04611 1.00807 1.19834 0.94057 0.92487 0.87276 1.83948 1.43245 1.67377 1.19330 1.21863 1.02084 1.32294 0.92532 0.87885 1.26581 0.99486 0.94829 1.01167 1.70188 1.25553 1.30992 1.29175 0.84534 0.77057 0.78868 0.75791 1.17276 1.19385 1.19572 1.20203 1.01249 1.07033 0.91704 0.88856 0.86187 0.83611 0.92017 0.88445 0.92678 0.92657 0.92644 0.91987 0.91339 0.91245 0.75214 0.89537 0.92084 0.83451 0.83283 0.86132 0.91878 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.41 13.17 67.78 0.89 -2.51 16 2 C -0.14 -2.20 7.99 25.64 0.21 -1.99 16 3 C -0.05 -0.92 0.62 -53.67 -0.03 -0.95 16 4 C -0.14 -2.37 8.00 71.98 0.58 -1.80 16 5 C -0.09 -1.78 4.27 30.60 0.13 -1.65 16 6 C -0.15 -1.83 9.30 71.98 0.67 -1.16 16 7 C 0.52 13.72 5.34 87.66 0.47 14.19 16 8 O -0.58 -19.66 15.98 -3.01 -0.05 -19.71 16 9 N -0.71 -17.74 3.72 -466.77 -1.73 -19.48 16 10 C 0.17 4.76 5.80 85.63 0.50 5.26 16 11 C -0.06 -1.85 5.25 -19.88 -0.10 -1.95 16 12 C -0.17 -4.73 9.70 22.30 0.22 -4.51 16 13 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 14 C -0.23 -9.57 9.17 22.39 0.21 -9.37 16 15 C 0.11 5.44 6.65 22.58 0.15 5.59 16 16 O -0.23 -13.68 9.76 -22.74 -0.22 -13.90 16 17 C -0.41 -23.43 9.49 67.92 0.64 -22.79 16 18 H 0.10 5.34 5.21 -2.91 -0.02 5.33 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 20 N -0.92 -56.02 13.67 21.61 0.30 -55.73 16 21 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 22 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 C -0.18 -7.47 9.65 22.39 0.22 -7.25 16 26 H 0.09 1.88 5.18 -2.91 -0.02 1.86 16 27 H 0.12 1.55 8.06 -2.91 -0.02 1.52 16 28 H 0.15 1.53 7.00 -2.91 -0.02 1.51 16 29 H 0.06 1.07 7.57 -2.39 -0.02 1.05 16 30 H 0.10 1.16 6.43 -2.38 -0.02 1.15 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 0.72 6.43 -2.38 -0.02 0.71 16 36 H 0.07 0.69 6.62 -2.39 -0.02 0.67 16 37 H 0.41 9.34 7.22 -92.71 -0.67 8.67 16 38 H 0.09 2.23 8.09 -2.38 -0.02 2.21 16 39 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 40 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.12 5.03 5.64 -2.91 -0.02 5.01 16 43 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -72.17 360.41 6.08 -66.09 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.34 Total: 32.20 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 5.42 Total: -33.60 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.44 Total: -75.20 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.27 Total: -33.61 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -72.17 6.08 -66.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320739569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.064 kcal (2) G-P(sol) polarization free energy of solvation -72.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.57 seconds