Wall clock time and date at job start Tue Mar 31 2020 10:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00482 * 2 1 4 4 C 1.52993 * 109.47361 * 124.96975 * 3 2 1 5 5 C 1.52999 * 109.46950 * 4.97018 * 3 2 1 6 6 C 1.52998 * 109.47375 * 174.03733 * 5 3 2 7 7 C 1.50697 * 109.47348 * 244.97400 * 3 2 1 8 8 O 1.21284 * 120.00590 * 119.99485 * 7 3 2 9 9 N 1.34779 * 119.99738 * 300.00169 * 7 3 2 10 10 C 1.46502 * 119.99916 * 180.02562 * 9 7 3 11 11 C 1.50704 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.38321 * 119.96623 * 269.72182 * 11 10 9 13 13 C 1.38276 * 120.13929 * 179.76207 * 12 11 10 14 14 C 1.38122 * 120.06763 * 0.51053 * 13 12 11 15 15 C 1.38857 * 119.93160 * 359.74900 * 14 13 12 16 16 O 1.35755 * 120.07021 * 179.97438 * 15 14 13 17 17 C 1.34827 * 116.99916 * 5.87302 * 16 15 14 18 18 H 1.08005 * 120.00095 * 5.35978 * 17 16 15 19 19 C 1.38655 * 119.99864 * 185.36179 * 17 16 15 20 20 N 1.31551 * 120.00019 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47371 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47182 * 120.00214 * 21 19 17 24 24 H 1.48504 * 109.46829 * 239.99916 * 21 19 17 25 25 C 1.38078 * 119.96269 * 89.99503 * 11 10 9 26 26 H 1.08006 * 119.99598 * 354.84072 * 1 2 3 27 27 H 1.07994 * 120.00407 * 174.83679 * 1 2 3 28 28 H 1.07998 * 120.00154 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47413 * 300.00085 * 4 3 2 30 30 H 1.09004 * 109.47235 * 60.00093 * 4 3 2 31 31 H 1.09001 * 109.47638 * 180.02562 * 4 3 2 32 32 H 1.09008 * 109.47185 * 54.03671 * 5 3 2 33 33 H 1.09002 * 109.47339 * 294.04274 * 5 3 2 34 34 H 1.09001 * 109.46936 * 55.73320 * 6 5 3 35 35 H 1.09004 * 109.46982 * 295.73314 * 6 5 3 36 36 H 1.08992 * 109.47353 * 175.73602 * 6 5 3 37 37 H 0.96994 * 120.00550 * 359.97438 * 9 7 3 38 38 H 1.09007 * 109.47113 * 299.99290 * 10 9 7 39 39 H 1.08997 * 109.47525 * 59.99438 * 10 9 7 40 40 H 1.08003 * 119.92624 * 359.97438 * 12 11 10 41 41 H 1.07997 * 119.96593 * 180.25586 * 13 12 11 42 42 H 1.08004 * 120.03190 * 179.75996 * 14 13 12 43 43 H 0.96999 * 119.99893 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03891 * 359.95764 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0345 1.3333 1.1820 5 6 1.0741 2.4653 0.1250 6 6 1.8444 3.7787 0.2745 7 6 2.8353 1.4395 -1.2874 8 8 2.6155 2.3716 -2.0317 9 7 3.7696 0.5240 -1.6117 10 6 4.5203 0.6550 -2.8630 11 6 5.4952 -0.4876 -2.9860 12 6 6.7763 -0.3602 -2.4802 13 6 7.6722 -1.4081 -2.5867 14 6 7.2934 -2.5820 -3.2082 15 6 6.0097 -2.7110 -3.7218 16 8 5.6346 -3.8633 -4.3337 17 6 6.5121 -4.8865 -4.3029 18 1 7.4258 -4.7973 -3.7340 19 6 6.2416 -6.0531 -5.0018 20 7 5.1285 -6.1618 -5.6944 21 14 7.4578 -7.4703 -4.9597 22 1 8.6214 -7.0992 -4.1151 23 1 6.7974 -8.6726 -4.3910 24 1 7.9211 -7.7660 -6.3393 25 6 5.1104 -1.6585 -3.6084 26 1 -0.5400 0.9316 0.0841 27 1 -0.5400 -0.9314 -0.0842 28 1 1.8499 -0.9353 0.0004 29 1 2.4764 1.2361 2.1132 30 1 3.7395 0.5067 1.0930 31 1 3.5793 2.2774 1.1823 32 1 0.4434 2.3123 1.0008 33 1 0.4509 2.5092 -0.7682 34 1 2.5308 3.8948 -0.5642 35 1 2.4089 3.7647 1.2068 36 1 1.1423 4.6123 0.2874 37 1 3.9457 -0.2213 -1.0164 38 1 3.8287 0.6352 -3.7054 39 1 5.0654 1.5988 -2.8626 40 1 7.0763 0.5585 -1.9980 41 1 8.6704 -1.3071 -2.1871 42 1 7.9948 -3.3987 -3.2945 43 1 4.9395 -6.9778 -6.1836 44 1 4.1112 -1.7561 -4.0065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320739570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:10 Heat of formation + Delta-G solvation = -30.830045 kcal Electronic energy + Delta-G solvation = -24195.584527 eV Core-core repulsion = 20692.865535 eV Total energy + Delta-G solvation = -3502.718992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.45624 -39.14123 -37.12129 -36.45509 -34.59011 -32.36435 -32.03647 -31.02183 -29.56567 -29.03200 -26.20606 -25.35086 -24.78215 -22.59402 -21.73270 -21.06802 -20.81772 -18.94568 -17.74263 -17.14366 -16.66757 -16.02783 -15.70588 -15.24053 -14.94470 -14.58240 -14.48779 -14.35768 -14.29990 -13.69261 -13.45933 -13.30320 -12.84600 -12.69380 -12.46713 -12.39815 -12.20122 -12.08558 -11.85335 -11.69548 -11.41302 -11.35052 -10.96263 -10.88329 -10.84858 -10.72381 -10.65937 -10.47809 -10.02688 -9.46298 -9.31387 -8.94978 -8.91049 -8.25576 -7.35285 -6.51580 -4.11032 1.86589 2.01300 2.24747 2.74809 3.07496 3.09440 3.15033 3.42198 3.90552 4.40607 4.47048 4.54557 4.74168 4.87367 4.97181 5.03874 5.12976 5.21828 5.25717 5.37110 5.41734 5.51009 5.55431 5.64041 5.72561 5.77096 5.82711 5.85010 5.89522 5.94775 6.06336 6.11415 6.23272 6.27313 6.40919 6.52060 6.53265 6.54020 6.79470 6.98037 7.16548 7.24733 7.33089 7.58366 7.69655 7.92571 8.27689 8.93899 9.62649 10.66259 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.002933 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.702811 B = 9543.008069 C =10184.343304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C -0.051 4.051 4 C -0.140 4.140 5 C -0.099 4.099 6 C -0.160 4.160 7 C 0.527 3.473 8 O -0.540 6.540 9 N -0.717 5.717 10 C 0.167 3.833 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.171 4.171 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.402 0.598 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 12.509 13.069 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.170 4.170 3 C -0.055 4.055 4 C -0.197 4.197 5 C -0.137 4.137 6 C -0.217 4.217 7 C 0.313 3.687 8 O -0.417 6.417 9 N -0.368 5.368 10 C 0.044 3.956 11 C -0.073 4.073 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.191 4.191 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.237 0.763 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.371 12.936 12.235 18.334 hybrid contribution 0.840 -1.290 0.216 1.555 sum -3.531 11.646 12.451 17.410 Atomic orbital electron populations 1.24050 0.95987 1.02511 0.99334 1.22774 0.96195 0.96645 1.01392 1.19939 0.96237 0.95475 0.93807 1.21880 0.98443 1.02820 0.96556 1.21440 0.97014 0.93142 1.02104 1.21958 1.00952 0.96449 1.02317 1.20333 0.79453 0.81834 0.87094 1.90656 1.66680 1.32375 1.51981 1.46139 1.38877 1.28344 1.23430 1.20158 0.92636 0.96456 0.86306 1.19270 0.94387 0.93923 0.99742 1.20473 0.94064 0.99343 1.07610 1.20746 0.98264 0.92957 0.97464 1.21248 0.97254 0.99587 1.06418 1.19336 0.92032 0.87442 0.91526 1.83998 1.42388 1.17121 1.64451 1.21363 1.02491 0.91279 1.31746 0.89022 1.25300 0.97458 0.98282 0.95446 1.70043 1.23074 1.27643 1.28725 0.85646 0.79355 0.79920 0.78509 1.19083 1.20099 1.20087 1.20085 0.99613 0.92633 1.06800 0.87716 0.88008 0.86601 0.91349 0.91894 0.91446 0.91371 0.90975 0.90801 0.93040 0.92995 0.76299 0.90908 0.90989 0.87527 0.87291 0.85461 0.91978 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 13.71 29.02 0.40 -1.28 16 2 C -0.15 -1.51 8.54 -36.02 -0.31 -1.82 16 3 C -0.05 -0.53 0.62 -156.82 -0.10 -0.63 16 4 C -0.14 -1.18 7.84 37.15 0.29 -0.89 16 5 C -0.10 -0.98 3.31 -26.73 -0.09 -1.07 16 6 C -0.16 -1.58 9.03 37.16 0.34 -1.25 16 7 C 0.53 7.05 6.15 -10.99 -0.07 6.99 16 8 O -0.54 -8.87 14.04 5.55 0.08 -8.79 16 9 N -0.72 -9.35 5.34 -61.47 -0.33 -9.68 16 10 C 0.17 2.45 5.80 -5.19 -0.03 2.42 16 11 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 12 C -0.20 -3.15 9.70 -39.54 -0.38 -3.53 16 13 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 14 C -0.23 -4.67 9.13 -39.40 -0.36 -5.03 16 15 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 16 O -0.18 -4.89 9.76 0.04 0.00 -4.89 16 17 C -0.39 -10.68 9.44 30.89 0.29 -10.39 16 18 H 0.09 2.30 5.30 -52.48 -0.28 2.03 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 21 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 26 H 0.10 0.88 5.71 -52.48 -0.30 0.58 16 27 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 31 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 32 H 0.07 0.55 7.28 -51.92 -0.38 0.18 16 33 H 0.07 0.81 7.49 -51.93 -0.39 0.42 16 34 H 0.07 0.91 5.98 -51.93 -0.31 0.60 16 35 H 0.05 0.44 6.60 -51.93 -0.34 0.09 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 4.76 7.77 -40.82 -0.32 4.44 16 38 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 39 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.66 5.72 -52.48 -0.30 2.36 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -30.70 360.90 -7.05 -37.75 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.28 Total: 8.75 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -1.70 Total: -19.58 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.43 Total: -33.71 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.70 -7.05 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320739570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.922 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds