Wall clock time and date at job start Tue Mar 31 2020 10:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00482 * 2 1 4 4 C 1.52993 * 109.47361 * 124.96975 * 3 2 1 5 5 C 1.52999 * 109.46950 * 4.97018 * 3 2 1 6 6 C 1.52998 * 109.47375 * 174.03733 * 5 3 2 7 7 C 1.50697 * 109.47348 * 244.97400 * 3 2 1 8 8 O 1.21284 * 120.00590 * 119.99485 * 7 3 2 9 9 N 1.34779 * 119.99738 * 300.00169 * 7 3 2 10 10 C 1.46502 * 119.99916 * 180.02562 * 9 7 3 11 11 C 1.50704 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.38321 * 119.96623 * 269.72182 * 11 10 9 13 13 C 1.38276 * 120.13929 * 179.76207 * 12 11 10 14 14 C 1.38122 * 120.06763 * 0.51053 * 13 12 11 15 15 C 1.38857 * 119.93160 * 359.74900 * 14 13 12 16 16 O 1.35755 * 120.07021 * 179.97438 * 15 14 13 17 17 C 1.34827 * 116.99916 * 5.87302 * 16 15 14 18 18 H 1.08005 * 120.00095 * 5.35978 * 17 16 15 19 19 C 1.38655 * 119.99864 * 185.36179 * 17 16 15 20 20 N 1.31551 * 120.00019 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47371 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47182 * 120.00214 * 21 19 17 24 24 H 1.48504 * 109.46829 * 239.99916 * 21 19 17 25 25 C 1.38078 * 119.96269 * 89.99503 * 11 10 9 26 26 H 1.08006 * 119.99598 * 354.84072 * 1 2 3 27 27 H 1.07994 * 120.00407 * 174.83679 * 1 2 3 28 28 H 1.07998 * 120.00154 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47413 * 300.00085 * 4 3 2 30 30 H 1.09004 * 109.47235 * 60.00093 * 4 3 2 31 31 H 1.09001 * 109.47638 * 180.02562 * 4 3 2 32 32 H 1.09008 * 109.47185 * 54.03671 * 5 3 2 33 33 H 1.09002 * 109.47339 * 294.04274 * 5 3 2 34 34 H 1.09001 * 109.46936 * 55.73320 * 6 5 3 35 35 H 1.09004 * 109.46982 * 295.73314 * 6 5 3 36 36 H 1.08992 * 109.47353 * 175.73602 * 6 5 3 37 37 H 0.96994 * 120.00550 * 359.97438 * 9 7 3 38 38 H 1.09007 * 109.47113 * 299.99290 * 10 9 7 39 39 H 1.08997 * 109.47525 * 59.99438 * 10 9 7 40 40 H 1.08003 * 119.92624 * 359.97438 * 12 11 10 41 41 H 1.07997 * 119.96593 * 180.25586 * 13 12 11 42 42 H 1.08004 * 120.03190 * 179.75996 * 14 13 12 43 43 H 0.96999 * 119.99893 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03891 * 359.95764 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0345 1.3333 1.1820 5 6 1.0741 2.4653 0.1250 6 6 1.8444 3.7787 0.2745 7 6 2.8353 1.4395 -1.2874 8 8 2.6155 2.3716 -2.0317 9 7 3.7696 0.5240 -1.6117 10 6 4.5203 0.6550 -2.8630 11 6 5.4952 -0.4876 -2.9860 12 6 6.7763 -0.3602 -2.4802 13 6 7.6722 -1.4081 -2.5867 14 6 7.2934 -2.5820 -3.2082 15 6 6.0097 -2.7110 -3.7218 16 8 5.6346 -3.8633 -4.3337 17 6 6.5121 -4.8865 -4.3029 18 1 7.4258 -4.7973 -3.7340 19 6 6.2416 -6.0531 -5.0018 20 7 5.1285 -6.1618 -5.6944 21 14 7.4578 -7.4703 -4.9597 22 1 8.6214 -7.0992 -4.1151 23 1 6.7974 -8.6726 -4.3910 24 1 7.9211 -7.7660 -6.3393 25 6 5.1104 -1.6585 -3.6084 26 1 -0.5400 0.9316 0.0841 27 1 -0.5400 -0.9314 -0.0842 28 1 1.8499 -0.9353 0.0004 29 1 2.4764 1.2361 2.1132 30 1 3.7395 0.5067 1.0930 31 1 3.5793 2.2774 1.1823 32 1 0.4434 2.3123 1.0008 33 1 0.4509 2.5092 -0.7682 34 1 2.5308 3.8948 -0.5642 35 1 2.4089 3.7647 1.2068 36 1 1.1423 4.6123 0.2874 37 1 3.9457 -0.2213 -1.0164 38 1 3.8287 0.6352 -3.7054 39 1 5.0654 1.5988 -2.8626 40 1 7.0763 0.5585 -1.9980 41 1 8.6704 -1.3071 -2.1871 42 1 7.9948 -3.3987 -3.2945 43 1 4.9395 -6.9778 -6.1836 44 1 4.1112 -1.7561 -4.0065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320739570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:09 Heat of formation + Delta-G solvation = -49.257983 kcal Electronic energy + Delta-G solvation = -24196.383623 eV Core-core repulsion = 20692.865535 eV Total energy + Delta-G solvation = -3503.518088 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49877 -40.76542 -38.61383 -37.54185 -35.84302 -34.29622 -32.81861 -32.34271 -30.88020 -30.19065 -27.64131 -26.97272 -25.74776 -23.52488 -23.24062 -22.40459 -21.98242 -20.06482 -19.39553 -18.77228 -17.64869 -17.15633 -16.84296 -16.65250 -16.34178 -16.10740 -15.65088 -15.55437 -15.46626 -15.24971 -14.84389 -14.37291 -14.13832 -13.93194 -13.74895 -13.49082 -13.38800 -13.12581 -13.03848 -12.83272 -12.61947 -12.55317 -12.37539 -12.29420 -12.20051 -12.08875 -11.64091 -11.43805 -11.24693 -10.97058 -10.81857 -10.21667 -10.09023 -9.74184 -9.04190 -8.47916 -6.16376 0.37553 0.69593 1.19709 1.35570 1.43352 1.53614 1.72797 2.16507 2.30660 2.85439 3.16893 3.37323 3.61404 3.72496 3.81032 3.93669 4.08504 4.11839 4.30337 4.40025 4.40620 4.48830 4.52246 4.62112 4.65981 4.72045 4.73212 4.87143 4.91764 5.00645 5.08659 5.10856 5.11701 5.19622 5.24524 5.34508 5.37909 5.53070 5.61415 5.67316 5.69910 5.70937 5.77986 6.00761 6.15707 6.53338 6.97072 7.22043 7.77391 8.75489 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.002933 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.702811 B = 9543.008069 C =10184.343304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 C -0.045 4.045 4 C -0.137 4.137 5 C -0.099 4.099 6 C -0.157 4.157 7 C 0.524 3.476 8 O -0.573 6.573 9 N -0.712 5.712 10 C 0.173 3.827 11 C -0.058 4.058 12 C -0.168 4.168 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.113 3.887 16 O -0.233 6.233 17 C -0.411 4.411 18 H 0.103 0.897 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.249 1.249 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.183 4.183 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.410 0.590 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.120 0.880 43 H 0.272 0.728 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 14.053 15.762 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.185 4.185 3 C -0.048 4.048 4 C -0.195 4.195 5 C -0.137 4.137 6 C -0.214 4.214 7 C 0.312 3.688 8 O -0.452 6.452 9 N -0.363 5.363 10 C 0.050 3.950 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.487 4.487 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.172 1.172 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.202 4.202 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.246 0.754 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.138 0.862 43 H 0.081 0.919 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.815 14.523 14.974 21.049 hybrid contribution 0.329 -1.419 -0.491 1.538 sum -2.486 13.104 14.483 19.689 Atomic orbital electron populations 1.24237 0.95904 1.03301 0.98024 1.22828 0.96554 0.96529 1.02578 1.19929 0.96374 0.95809 0.92723 1.21901 0.98254 1.03065 0.96252 1.21462 0.96959 0.93027 1.02218 1.21918 1.00756 0.96747 1.01975 1.20931 0.79069 0.81007 0.87799 1.90647 1.67550 1.33716 1.53293 1.46056 1.38795 1.28653 1.22846 1.20032 0.92223 0.95924 0.86831 1.19444 0.95398 0.92945 0.98082 1.20989 0.92786 1.00203 1.04742 1.21164 1.00220 0.91397 0.95864 1.21378 0.96130 1.01015 1.06833 1.19851 0.93940 0.87261 0.92640 1.83959 1.43864 1.18780 1.67332 1.21846 1.02813 0.91916 1.32113 0.87936 1.26583 0.99504 1.01133 0.94854 1.70190 1.25818 1.28831 1.31079 0.84533 0.77038 0.75808 0.78875 1.17248 1.19426 1.19543 1.20208 0.98977 0.93411 1.07647 0.86909 0.87306 0.86514 0.89651 0.91442 0.91347 0.89138 0.92800 0.93427 0.91364 0.92277 0.75439 0.92237 0.89509 0.83390 0.83288 0.86179 0.91878 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 13.71 67.79 0.93 -2.06 16 2 C -0.17 -3.06 8.54 25.65 0.22 -2.84 16 3 C -0.05 -0.85 0.62 -53.68 -0.03 -0.89 16 4 C -0.14 -1.94 7.84 71.98 0.56 -1.37 16 5 C -0.10 -1.78 3.31 30.59 0.10 -1.68 16 6 C -0.16 -2.84 9.03 71.98 0.65 -2.19 16 7 C 0.52 13.39 6.15 87.66 0.54 13.93 16 8 O -0.57 -18.53 14.04 -3.04 -0.04 -18.57 16 9 N -0.71 -17.41 5.34 -466.77 -2.49 -19.91 16 10 C 0.17 4.78 5.80 85.63 0.50 5.28 16 11 C -0.06 -1.84 5.25 -19.88 -0.10 -1.94 16 12 C -0.17 -4.72 9.70 22.30 0.22 -4.50 16 13 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 14 C -0.23 -9.57 9.13 22.39 0.20 -9.37 16 15 C 0.11 5.42 6.65 22.58 0.15 5.57 16 16 O -0.23 -13.71 9.76 -22.76 -0.22 -13.93 16 17 C -0.41 -23.36 9.44 67.92 0.64 -22.72 16 18 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 20 N -0.92 -56.05 13.67 21.61 0.30 -55.76 16 21 Si 1.02 42.04 29.55 68.60 2.03 44.06 16 22 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.18 -7.48 9.65 22.39 0.22 -7.27 16 26 H 0.11 1.69 5.71 -2.91 -0.02 1.67 16 27 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 28 H 0.12 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.89 7.56 -2.38 -0.02 0.87 16 31 H 0.07 0.96 6.43 -2.39 -0.02 0.94 16 32 H 0.09 1.22 7.28 -2.38 -0.02 1.21 16 33 H 0.05 1.17 7.49 -2.39 -0.02 1.15 16 34 H 0.05 1.13 5.98 -2.39 -0.01 1.11 16 35 H 0.07 0.98 6.60 -2.38 -0.02 0.97 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.41 8.89 7.77 -92.71 -0.72 8.17 16 38 H 0.06 1.83 8.09 -2.38 -0.02 1.81 16 39 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 40 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 41 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 42 H 0.12 5.02 5.72 -2.91 -0.02 5.00 16 43 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -71.65 360.90 5.33 -66.32 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.29 Total: 32.57 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 5.48 Total: -34.79 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -2.20 Total: -75.66 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.26 Total: -32.50 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -71.65 5.33 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320739570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.063 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds