Wall clock time and date at job start Tue Mar 31 2020 09:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 C 1.52996 * 109.47099 * 119.99529 * 2 1 3 5 5 C 1.53003 * 115.54752 * 34.33769 * 4 2 1 6 6 C 1.52995 * 117.52075 * 248.62731 * 4 2 1 7 7 C 1.52995 * 117.49912 * 179.97438 * 4 2 1 8 8 H 1.09011 * 117.49940 * 0.02562 * 7 4 2 9 9 C 1.50702 * 117.50525 * 215.00969 * 7 4 2 10 10 O 1.21293 * 119.99297 * 359.97438 * 9 7 4 11 11 N 1.34777 * 120.00307 * 180.02562 * 9 7 4 12 12 C 1.39989 * 119.99639 * 184.24015 * 11 9 7 13 13 C 1.38918 * 120.00558 * 324.64673 * 12 11 9 14 14 C 1.38003 * 119.99719 * 179.74667 * 13 12 11 15 15 C 1.38907 * 120.00182 * 0.52991 * 14 13 12 16 16 O 1.35780 * 119.99594 * 179.72698 * 15 14 13 17 17 C 1.34816 * 116.99775 * 185.36346 * 16 15 14 18 18 H 1.08006 * 119.99807 * 354.95856 * 17 16 15 19 19 C 1.38624 * 120.00212 * 174.96427 * 17 16 15 20 20 N 1.31573 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47194 * 89.99676 * 21 19 17 23 23 H 1.48504 * 109.46769 * 209.99829 * 21 19 17 24 24 H 1.48502 * 109.46686 * 329.99453 * 21 19 17 25 25 C 1.38905 * 120.00219 * 359.74254 * 15 14 13 26 26 C 1.38001 * 120.00043 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.47149 * 299.99945 * 1 2 3 28 28 H 1.08999 * 109.47143 * 59.99946 * 1 2 3 29 29 H 1.08996 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47149 * 240.00054 * 2 1 3 31 31 H 1.08997 * 109.47500 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47231 * 300.00000 * 3 2 1 33 33 H 1.09001 * 109.47157 * 59.99516 * 3 2 1 34 34 H 1.09008 * 109.46751 * 205.66494 * 5 4 2 35 35 H 1.09000 * 109.47118 * 325.65799 * 5 4 2 36 36 H 1.08994 * 109.47839 * 85.66579 * 5 4 2 37 37 H 1.09003 * 117.49433 * 145.03436 * 6 4 2 38 38 H 1.08998 * 117.50217 * 0.02562 * 6 4 2 39 39 H 0.96992 * 119.99908 * 4.51852 * 11 9 7 40 40 H 1.08002 * 119.99990 * 359.97438 * 13 12 11 41 41 H 1.08005 * 120.00034 * 180.25218 * 14 13 12 42 42 H 0.97003 * 120.00839 * 180.02562 * 20 19 17 43 43 H 1.07997 * 119.99913 * 180.02562 * 25 15 14 44 44 H 1.08003 * 119.99850 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.1853 -1.8965 1.7278 6 6 2.7418 0.1224 2.3154 7 6 3.5550 -0.8285 1.4340 8 1 4.1884 -0.3849 0.6657 9 6 4.0909 -2.0833 2.0738 10 8 3.3283 -2.9603 2.4208 11 7 5.4174 -2.2305 2.2613 12 6 5.9228 -3.4314 2.7734 13 6 5.1993 -4.1403 3.7240 14 6 5.6952 -5.3268 4.2249 15 6 6.9230 -5.8065 3.7867 16 8 7.4134 -6.9710 4.2837 17 6 8.6571 -7.3239 3.9015 18 1 9.1843 -6.7333 3.1668 19 6 9.2594 -8.4449 4.4514 20 7 8.6174 -9.1642 5.3467 21 14 10.9830 -8.9336 3.9223 22 1 11.9777 -8.2724 4.8045 23 1 11.1329 -10.4075 4.0246 24 1 11.2083 -8.5094 2.5171 25 6 7.6491 -5.0947 2.8404 26 6 7.1506 -3.9113 2.3351 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.3352 -2.0428 2.7976 35 1 0.1339 -1.6837 1.5341 36 1 1.4777 -2.8000 1.1930 37 1 2.5946 -0.1601 3.3579 38 1 2.8401 1.1915 2.1273 39 1 6.0214 -1.5031 2.0452 40 1 4.2470 -3.7649 4.0683 41 1 5.1308 -5.8801 4.9610 42 1 9.0389 -9.9484 5.7318 43 1 8.6035 -5.4679 2.4994 44 1 7.7150 -3.3581 1.5990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321437011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:03 Heat of formation + Delta-G solvation = -14.961750 kcal Electronic energy + Delta-G solvation = -24016.226853 eV Core-core repulsion = 20514.195962 eV Total energy + Delta-G solvation = -3502.030891 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 6.86 seconds Orbital eigenvalues (eV) -40.65415 -39.15904 -38.11895 -36.33805 -33.92781 -33.32460 -32.16943 -30.20442 -29.48656 -28.14714 -26.51645 -25.41150 -24.12520 -23.23026 -22.23910 -21.16969 -19.95085 -18.55088 -18.02218 -17.23379 -17.16923 -16.45854 -15.66492 -14.92128 -14.76919 -14.55682 -14.43686 -14.16181 -13.59865 -13.51882 -13.41677 -13.20441 -12.88053 -12.78696 -12.61671 -12.47682 -11.93505 -11.89840 -11.79778 -11.65277 -11.52143 -11.48685 -11.26385 -11.03471 -10.91200 -10.71215 -10.45734 -10.23665 -9.88266 -9.59467 -9.40218 -9.15661 -8.70231 -8.18947 -6.91703 -6.43560 -4.01761 2.08768 2.21798 2.72708 3.13117 3.13931 3.18747 3.28835 3.63957 3.97503 4.39483 4.44273 4.57446 4.59945 4.67989 4.83491 4.99137 5.05577 5.11361 5.30847 5.32746 5.34057 5.41908 5.56360 5.57323 5.59252 5.68844 5.74055 5.80645 5.81202 5.90750 5.95467 6.06757 6.12862 6.16171 6.24335 6.31219 6.50940 6.82235 6.87380 7.01613 7.18310 7.23607 7.42397 7.75957 7.81060 8.00894 8.44471 9.01718 9.72436 10.74437 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.041237 B = 0.002446 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.840448 B =11446.618212 C =11771.930935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.082 4.082 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.186 4.186 8 H 0.120 0.880 9 C 0.534 3.466 10 O -0.521 6.521 11 N -0.659 5.659 12 C 0.035 3.965 13 C -0.067 4.067 14 C -0.179 4.179 15 C 0.147 3.853 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.220 4.220 26 C -0.090 4.090 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.401 0.599 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.270 0.730 43 H 0.131 0.869 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 20.551 -9.611 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.209 4.209 4 C -0.083 4.083 5 C -0.167 4.167 6 C -0.190 4.190 7 C -0.208 4.208 8 H 0.138 0.862 9 C 0.322 3.678 10 O -0.397 6.397 11 N -0.303 5.303 12 C -0.057 4.057 13 C -0.087 4.087 14 C -0.199 4.199 15 C 0.093 3.907 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.240 4.240 26 C -0.111 4.111 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.235 0.765 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.080 0.920 43 H 0.149 0.851 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.977 19.532 -9.092 24.180 hybrid contribution 1.516 0.159 -0.508 1.606 sum -9.462 19.691 -9.600 23.863 Atomic orbital electron populations 1.21895 0.94654 1.02230 1.01574 1.20622 0.96041 0.95289 0.96000 1.21991 1.00998 0.95968 1.01898 1.21590 0.90667 0.99016 0.96991 1.21486 0.97296 0.95761 1.02131 1.23329 1.01815 0.97120 0.96697 1.22347 0.96187 0.97868 1.04351 0.86234 1.19704 0.82057 0.87451 0.78614 1.90702 1.56440 1.42606 1.49975 1.43196 1.07409 1.15511 1.64140 1.17268 0.96820 0.90284 1.01326 1.20730 0.99158 0.94483 0.94296 1.20157 0.96351 0.98137 1.05287 1.19418 0.92715 0.86545 0.92013 1.83992 1.31304 1.30692 1.62043 1.21311 0.89580 1.11521 1.24370 0.89098 1.25287 0.99832 0.95549 0.95910 1.70046 1.37453 1.16183 1.26038 0.85713 0.80488 0.78181 0.79040 1.19896 1.20270 1.19231 1.20969 1.02877 0.97284 1.02878 1.20486 0.95162 0.96134 0.99268 0.92459 0.92815 0.91857 0.90743 0.92592 0.92595 0.92116 0.91676 0.92637 0.91325 0.88368 0.87429 0.76496 0.85395 0.86176 0.92024 0.85142 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.20 37.16 0.30 -0.71 16 2 C -0.06 -0.46 3.15 -90.62 -0.29 -0.75 16 3 C -0.15 -0.92 7.79 37.16 0.29 -0.63 16 4 C -0.08 -0.78 2.46 -154.51 -0.38 -1.16 16 5 C -0.11 -1.25 7.73 37.16 0.29 -0.97 16 6 C -0.15 -1.32 8.92 -26.71 -0.24 -1.56 16 7 C -0.19 -1.88 5.56 -91.75 -0.51 -2.39 16 8 H 0.12 0.96 7.61 -51.92 -0.40 0.57 16 9 C 0.53 7.56 7.43 -10.98 -0.08 7.47 16 10 O -0.52 -9.12 10.56 5.55 0.06 -9.06 16 11 N -0.66 -9.19 5.34 -9.82 -0.05 -9.24 16 12 C 0.04 0.64 6.30 -83.63 -0.53 0.11 16 13 C -0.07 -1.34 8.68 -39.42 -0.34 -1.68 16 14 C -0.18 -4.02 9.98 -39.42 -0.39 -4.41 16 15 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 16 O -0.18 -5.11 9.76 0.00 0.00 -5.11 16 17 C -0.39 -10.98 9.48 30.87 0.29 -10.69 16 18 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 21 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.22 -4.79 9.16 -39.42 -0.36 -5.15 16 26 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.46 6.45 -51.93 -0.33 0.13 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.32 7.08 -51.93 -0.37 -0.04 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.35 6.98 -51.93 -0.36 -0.01 16 34 H 0.06 0.84 7.01 -51.92 -0.36 0.48 16 35 H 0.05 0.53 5.59 -51.93 -0.29 0.24 16 36 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 37 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.11 0.72 5.85 -51.93 -0.30 0.41 16 39 H 0.40 4.17 8.82 -40.82 -0.36 3.81 16 40 H 0.13 2.49 6.25 -52.49 -0.33 2.17 16 41 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 44 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -32.22 351.92 -7.79 -40.01 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.14 Total: 7.51 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.69 Total: -20.22 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.71 Total: -33.96 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.06 Total: -14.17 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.22 -7.79 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321437011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.045 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.86 seconds