Wall clock time and date at job start Tue Mar 31 2020 09:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 C 1.52996 * 109.47099 * 119.99529 * 2 1 3 5 5 C 1.53003 * 115.54752 * 34.33769 * 4 2 1 6 6 C 1.52995 * 117.52075 * 248.62731 * 4 2 1 7 7 C 1.52995 * 117.49912 * 179.97438 * 4 2 1 8 8 H 1.09011 * 117.49940 * 0.02562 * 7 4 2 9 9 C 1.50702 * 117.50525 * 215.00969 * 7 4 2 10 10 O 1.21293 * 119.99297 * 359.97438 * 9 7 4 11 11 N 1.34777 * 120.00307 * 180.02562 * 9 7 4 12 12 C 1.39989 * 119.99639 * 184.24015 * 11 9 7 13 13 C 1.38918 * 120.00558 * 324.64673 * 12 11 9 14 14 C 1.38003 * 119.99719 * 179.74667 * 13 12 11 15 15 C 1.38907 * 120.00182 * 0.52991 * 14 13 12 16 16 O 1.35780 * 119.99594 * 179.72698 * 15 14 13 17 17 C 1.34816 * 116.99775 * 185.36346 * 16 15 14 18 18 H 1.08006 * 119.99807 * 354.95856 * 17 16 15 19 19 C 1.38624 * 120.00212 * 174.96427 * 17 16 15 20 20 N 1.31573 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47194 * 89.99676 * 21 19 17 23 23 H 1.48504 * 109.46769 * 209.99829 * 21 19 17 24 24 H 1.48502 * 109.46686 * 329.99453 * 21 19 17 25 25 C 1.38905 * 120.00219 * 359.74254 * 15 14 13 26 26 C 1.38001 * 120.00043 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.47149 * 299.99945 * 1 2 3 28 28 H 1.08999 * 109.47143 * 59.99946 * 1 2 3 29 29 H 1.08996 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47149 * 240.00054 * 2 1 3 31 31 H 1.08997 * 109.47500 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47231 * 300.00000 * 3 2 1 33 33 H 1.09001 * 109.47157 * 59.99516 * 3 2 1 34 34 H 1.09008 * 109.46751 * 205.66494 * 5 4 2 35 35 H 1.09000 * 109.47118 * 325.65799 * 5 4 2 36 36 H 1.08994 * 109.47839 * 85.66579 * 5 4 2 37 37 H 1.09003 * 117.49433 * 145.03436 * 6 4 2 38 38 H 1.08998 * 117.50217 * 0.02562 * 6 4 2 39 39 H 0.96992 * 119.99908 * 4.51852 * 11 9 7 40 40 H 1.08002 * 119.99990 * 359.97438 * 13 12 11 41 41 H 1.08005 * 120.00034 * 180.25218 * 14 13 12 42 42 H 0.97003 * 120.00839 * 180.02562 * 20 19 17 43 43 H 1.07997 * 119.99913 * 180.02562 * 25 15 14 44 44 H 1.08003 * 119.99850 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.1853 -1.8965 1.7278 6 6 2.7418 0.1224 2.3154 7 6 3.5550 -0.8285 1.4340 8 1 4.1884 -0.3849 0.6657 9 6 4.0909 -2.0833 2.0738 10 8 3.3283 -2.9603 2.4208 11 7 5.4174 -2.2305 2.2613 12 6 5.9228 -3.4314 2.7734 13 6 5.1993 -4.1403 3.7240 14 6 5.6952 -5.3268 4.2249 15 6 6.9230 -5.8065 3.7867 16 8 7.4134 -6.9710 4.2837 17 6 8.6571 -7.3239 3.9015 18 1 9.1843 -6.7333 3.1668 19 6 9.2594 -8.4449 4.4514 20 7 8.6174 -9.1642 5.3467 21 14 10.9830 -8.9336 3.9223 22 1 11.9777 -8.2724 4.8045 23 1 11.1329 -10.4075 4.0246 24 1 11.2083 -8.5094 2.5171 25 6 7.6491 -5.0947 2.8404 26 6 7.1506 -3.9113 2.3351 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.3352 -2.0428 2.7976 35 1 0.1339 -1.6837 1.5341 36 1 1.4777 -2.8000 1.1930 37 1 2.5946 -0.1601 3.3579 38 1 2.8401 1.1915 2.1273 39 1 6.0214 -1.5031 2.0452 40 1 4.2470 -3.7649 4.0683 41 1 5.1308 -5.8801 4.9610 42 1 9.0389 -9.9484 5.7318 43 1 8.6035 -5.4679 2.4994 44 1 7.7150 -3.3581 1.5990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321437011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:01 Heat of formation + Delta-G solvation = -34.332133 kcal Electronic energy + Delta-G solvation = -24017.066816 eV Core-core repulsion = 20514.195962 eV Total energy + Delta-G solvation = -3502.870854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77971 -40.68846 -39.39193 -37.90083 -35.38597 -34.19166 -33.94866 -31.89069 -30.33405 -29.62905 -27.48075 -27.06949 -25.23873 -23.93270 -23.85983 -22.67369 -21.20154 -19.85681 -19.34078 -18.91678 -18.21622 -17.91890 -16.68302 -16.36197 -16.18579 -15.85149 -15.59480 -15.47690 -15.21348 -15.09942 -14.58338 -14.23229 -14.17649 -13.92919 -13.62630 -13.57687 -13.33181 -13.28152 -13.19070 -12.72122 -12.55896 -12.51688 -12.40833 -12.23492 -12.12088 -11.92348 -11.52725 -11.32439 -11.06936 -10.98560 -10.71050 -10.57407 -10.36840 -9.85514 -8.62283 -8.45916 -6.13704 0.49460 0.53188 1.36318 1.44145 1.54287 1.56796 2.12044 2.19036 2.77506 2.85309 3.14939 3.50374 3.60221 3.69827 3.85389 3.97682 4.04475 4.11327 4.17211 4.29341 4.44663 4.47911 4.61212 4.69174 4.75452 4.80518 4.86274 4.93406 4.99136 5.01766 5.07188 5.10075 5.12908 5.17821 5.23589 5.26805 5.30882 5.46132 5.48516 5.53443 5.55033 5.61520 5.68098 6.01983 6.16466 6.58364 6.98010 7.28907 7.78680 8.77370 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.041237 B = 0.002446 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.840448 B =11446.618212 C =11771.930935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.150 4.150 4 C -0.089 4.089 5 C -0.106 4.106 6 C -0.136 4.136 7 C -0.186 4.186 8 H 0.152 0.848 9 C 0.529 3.471 10 O -0.559 6.559 11 N -0.649 5.649 12 C 0.063 3.937 13 C -0.073 4.073 14 C -0.192 4.192 15 C 0.107 3.893 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.107 0.893 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 1.021 2.979 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.250 1.250 25 C -0.221 4.221 26 C -0.080 4.080 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.424 0.576 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.272 0.728 43 H 0.132 0.868 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 24.509 -12.248 29.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.207 4.207 4 C -0.089 4.089 5 C -0.163 4.163 6 C -0.172 4.172 7 C -0.207 4.207 8 H 0.169 0.831 9 C 0.319 3.681 10 O -0.437 6.437 11 N -0.295 5.295 12 C -0.031 4.031 13 C -0.093 4.093 14 C -0.211 4.211 15 C 0.057 3.943 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.124 0.876 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.173 1.173 25 C -0.240 4.240 26 C -0.100 4.100 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.156 0.844 39 H 0.262 0.738 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.190 23.583 -11.765 28.256 hybrid contribution 0.979 -0.800 0.236 1.286 sum -9.212 22.783 -11.529 27.144 Atomic orbital electron populations 1.21896 0.94406 1.01814 1.02306 1.20624 0.96270 0.96184 0.94519 1.21985 1.01509 0.94526 1.02640 1.21666 0.90015 0.98760 0.98491 1.21386 0.98890 0.95754 1.00280 1.23420 0.99837 0.98325 0.95668 1.22372 0.96738 0.96241 1.05333 0.83079 1.20527 0.81536 0.88345 0.77690 1.90713 1.57338 1.44306 1.51331 1.43171 1.08064 1.14655 1.63602 1.17408 0.95957 0.90848 0.98894 1.20832 0.99567 0.93935 0.94944 1.20270 0.96072 0.99169 1.05635 1.19864 0.93929 0.86766 0.93759 1.83961 1.32279 1.33163 1.64435 1.21877 0.89873 1.12196 1.24958 0.87617 1.26652 1.04711 0.95186 0.95761 1.70207 1.40025 1.17371 1.28499 0.84549 0.74157 0.77795 0.79461 1.18723 1.19862 1.17347 1.21131 1.02696 0.98166 1.02040 1.20853 0.95164 0.94834 0.99125 0.92221 0.91609 0.92876 0.91101 0.91763 0.91757 0.91563 0.93893 0.91069 0.94063 0.89652 0.84419 0.73753 0.85053 0.87166 0.91882 0.84991 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.20 71.98 0.59 -1.09 16 2 C -0.06 -0.70 3.15 -10.79 -0.03 -0.73 16 3 C -0.15 -1.16 7.79 71.98 0.56 -0.60 16 4 C -0.09 -1.48 2.46 -52.19 -0.13 -1.61 16 5 C -0.11 -2.39 7.73 71.98 0.56 -1.83 16 6 C -0.14 -1.89 8.92 30.61 0.27 -1.62 16 7 C -0.19 -3.10 5.56 -11.53 -0.06 -3.16 16 8 H 0.15 1.62 7.61 -2.38 -0.02 1.60 16 9 C 0.53 13.76 7.43 87.66 0.65 14.41 16 10 O -0.56 -19.32 10.56 -3.07 -0.03 -19.35 16 11 N -0.65 -15.89 5.34 -303.38 -1.62 -17.50 16 12 C 0.06 2.12 6.30 38.16 0.24 2.36 16 13 C -0.07 -2.92 8.68 22.38 0.19 -2.73 16 14 C -0.19 -8.99 9.98 22.37 0.22 -8.77 16 15 C 0.11 5.53 6.65 22.59 0.15 5.68 16 16 O -0.23 -14.25 9.76 -22.93 -0.22 -14.47 16 17 C -0.41 -24.12 9.48 67.91 0.64 -23.48 16 18 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 19 C -0.03 -1.48 5.49 84.82 0.47 -1.02 16 20 N -0.92 -57.45 13.67 21.61 0.30 -57.16 16 21 Si 1.02 42.79 29.55 68.60 2.03 44.82 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 25 C -0.22 -9.51 9.16 22.37 0.20 -9.31 16 26 C -0.08 -2.69 9.96 22.38 0.22 -2.47 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.70 6.45 -2.39 -0.02 0.69 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.41 7.08 -2.39 -0.02 0.39 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.46 6.98 -2.39 -0.02 0.44 16 34 H 0.04 1.13 7.01 -2.38 -0.02 1.11 16 35 H 0.07 1.32 5.59 -2.39 -0.01 1.30 16 36 H 0.04 1.13 7.26 -2.39 -0.02 1.12 16 37 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 38 H 0.14 1.14 5.85 -2.39 -0.01 1.13 16 39 H 0.42 6.73 8.82 -92.71 -0.82 5.91 16 40 H 0.13 5.19 6.25 -2.91 -0.02 5.17 16 41 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.13 5.59 5.63 -2.91 -0.02 5.58 16 44 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -76.34 351.92 5.41 -70.93 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.21 Total: 28.70 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.75 Total: -35.96 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.32 Total: -74.66 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.26 Total: -33.82 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -76.34 5.41 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321437011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.596 kcal (2) G-P(sol) polarization free energy of solvation -76.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds