Wall clock time and date at job start Tue Mar 31 2020 10:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99800 * 2 1 4 4 C 1.52996 * 109.47144 * 124.99573 * 3 2 1 5 5 C 1.53002 * 109.46995 * 60.00062 * 4 3 2 6 6 C 1.52990 * 109.47457 * 300.00211 * 4 3 2 7 7 C 1.50700 * 109.46849 * 179.97438 * 4 3 2 8 8 O 1.21274 * 120.00375 * 0.02562 * 7 4 3 9 9 N 1.34783 * 119.99813 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00093 * 180.02562 * 9 7 4 11 11 C 1.50699 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96230 * 269.98024 * 11 10 9 13 13 C 1.38281 * 120.13505 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46908 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47373 * 240.00300 * 21 19 17 25 25 C 1.38073 * 119.96534 * 89.99825 * 11 10 9 26 26 H 1.08010 * 119.99734 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00440 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00256 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46571 * 4.99809 * 3 2 1 30 30 H 1.08998 * 109.47190 * 245.00256 * 3 2 1 31 31 H 1.09001 * 109.47118 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47346 * 300.00363 * 5 4 3 33 33 H 1.09003 * 109.47032 * 59.99971 * 5 4 3 34 34 H 1.09004 * 109.47581 * 299.99949 * 6 4 3 35 35 H 1.09007 * 109.47499 * 59.99717 * 6 4 3 36 36 H 1.09002 * 109.47490 * 179.97438 * 6 4 3 37 37 H 0.97004 * 119.99718 * 0.02562 * 9 7 4 38 38 H 1.09002 * 109.46490 * 60.00223 * 10 9 7 39 39 H 1.08992 * 109.46880 * 300.00477 * 10 9 7 40 40 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 41 41 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 42 42 H 1.08006 * 120.03715 * 180.31908 * 14 13 12 43 43 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03547 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 4.0245 0.1731 1.0560 6 6 2.2520 1.1964 2.4889 7 6 3.7888 2.6381 1.1812 8 8 3.5703 3.4644 0.3209 9 7 4.7059 2.8868 2.1371 10 6 5.4384 4.1556 2.1370 11 6 6.3963 4.1826 3.3001 12 6 5.9859 4.6860 4.5215 13 6 6.8620 4.7130 5.5910 14 6 8.1481 4.2312 5.4443 15 6 8.5648 3.7306 4.2181 16 8 9.8302 3.2619 4.0692 17 6 10.6686 3.4209 5.1130 18 1 10.3015 3.8289 6.0432 19 6 12.0021 3.0607 4.9922 20 7 12.4493 2.5642 3.8591 21 14 13.1639 3.2817 6.4382 22 1 12.4195 3.8553 7.5881 23 1 13.7306 1.9643 6.8236 24 1 14.2649 4.2006 6.0527 25 6 7.6826 3.7054 3.1455 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3584 2.1316 0.0895 30 1 2.6212 1.4027 -0.9314 31 1 4.7169 0.1933 1.8976 32 1 3.4795 -0.7709 1.0559 33 1 4.5823 0.2706 0.1246 34 1 1.5470 2.0228 2.5785 35 1 1.7070 0.2523 2.4890 36 1 2.9442 1.2159 3.3308 37 1 4.8810 2.2257 2.8250 38 1 4.7334 4.9820 2.2271 39 1 5.9957 4.2532 1.2055 40 1 4.9791 5.0586 4.6400 41 1 6.5388 5.1070 6.5431 42 1 8.8304 4.2478 6.2814 43 1 13.3822 2.3126 3.7745 44 1 8.0026 3.3132 2.1915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325026148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:23 Heat of formation + Delta-G solvation = -37.303293 kcal Electronic energy + Delta-G solvation = -23912.014915 eV Core-core repulsion = 20409.015222 eV Total energy + Delta-G solvation = -3502.999693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 12.70 seconds Orbital eigenvalues (eV) -40.31061 -39.12733 -37.10235 -36.51618 -34.57405 -33.02251 -32.34974 -30.67216 -29.15133 -27.58888 -26.87058 -26.11313 -25.19531 -22.91297 -21.72983 -20.84379 -20.19773 -19.04213 -17.82235 -17.20401 -16.56763 -16.16291 -15.54434 -15.30063 -15.03926 -14.64566 -14.48560 -14.20371 -14.07207 -13.67798 -13.63137 -13.43703 -13.02023 -12.67499 -12.51313 -12.42973 -12.32312 -12.10112 -11.87806 -11.69457 -11.40724 -11.32751 -11.16695 -11.04565 -10.96696 -10.83556 -10.71588 -10.48143 -9.70724 -9.51707 -9.42793 -8.97052 -8.91610 -8.26188 -7.35415 -6.51489 -4.10982 1.87452 2.05228 2.24380 2.68264 3.07459 3.09656 3.15141 3.37183 3.90506 4.41603 4.50615 4.56743 4.66719 4.89039 4.90571 4.98779 5.03743 5.08742 5.26260 5.38557 5.49725 5.50890 5.54973 5.58693 5.65592 5.72648 5.75144 5.82111 5.85996 5.91557 6.00301 6.04360 6.06067 6.22881 6.40047 6.49670 6.53284 6.55076 6.79210 6.97388 7.16457 7.24910 7.33255 7.57763 7.69299 7.92763 8.26559 8.94028 9.62531 10.66341 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.002637 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.295845 B =10613.740106 C =11087.816291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.071 4.071 4 C -0.077 4.077 5 C -0.144 4.144 6 C -0.140 4.140 7 C 0.520 3.480 8 O -0.546 6.546 9 N -0.718 5.718 10 C 0.167 3.833 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.171 4.171 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.411 -4.047 -1.876 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.108 4.108 4 C -0.080 4.080 5 C -0.202 4.202 6 C -0.197 4.197 7 C 0.306 3.694 8 O -0.423 6.423 9 N -0.369 5.369 10 C 0.044 3.956 11 C -0.073 4.073 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.191 4.191 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.238 0.762 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.204 -3.632 -2.780 18.770 hybrid contribution 0.790 -0.160 1.192 1.439 sum -17.413 -3.792 -1.588 17.892 Atomic orbital electron populations 1.23845 0.95947 1.01725 1.01927 1.22982 0.95949 0.98432 0.99115 1.20593 0.97428 0.95392 0.97405 1.20744 0.96053 0.93392 0.97790 1.21933 0.98343 0.96966 1.02928 1.21874 1.00114 1.02833 0.94903 1.20534 0.79501 0.88360 0.80974 1.90680 1.66108 1.48147 1.37407 1.46142 1.40160 1.20088 1.30486 1.20156 0.92893 0.85692 0.96846 1.19269 0.93472 1.00355 0.94225 1.20477 0.99439 1.08302 0.93265 1.20744 0.93249 0.97724 0.97695 1.21243 0.97353 1.07519 0.98427 1.19324 0.86664 0.91566 0.92779 1.83982 1.15919 1.67503 1.40560 1.21373 0.89418 1.44444 0.91670 0.88979 1.25301 0.96522 0.96332 0.98342 1.70042 1.16047 1.39030 1.24413 0.85643 0.79702 0.78402 0.79654 1.19085 1.20105 1.20085 1.20084 0.92918 1.07919 0.98167 0.88638 0.88655 0.87194 0.90786 0.90202 0.91767 0.91198 0.91864 0.92163 0.91206 0.91971 0.76243 0.91008 0.90898 0.87534 0.87291 0.85460 0.91982 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 14.32 29.01 0.42 -1.04 16 2 C -0.15 -1.17 7.65 -36.02 -0.28 -1.45 16 3 C -0.07 -0.70 4.02 -27.88 -0.11 -0.81 16 4 C -0.08 -0.76 0.64 -155.67 -0.10 -0.86 16 5 C -0.14 -1.28 8.11 37.16 0.30 -0.98 16 6 C -0.14 -1.18 8.12 37.15 0.30 -0.88 16 7 C 0.52 6.92 6.48 -10.98 -0.07 6.85 16 8 O -0.55 -9.18 15.98 5.56 0.09 -9.09 16 9 N -0.72 -9.28 5.33 -61.47 -0.33 -9.61 16 10 C 0.17 2.44 5.80 -5.19 -0.03 2.41 16 11 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 12 C -0.20 -3.15 9.70 -39.53 -0.38 -3.53 16 13 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 14 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 15 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 16 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 17 C -0.39 -10.68 9.49 30.89 0.29 -10.39 16 18 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.78 13.67 55.48 0.76 -24.02 16 21 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 25 C -0.17 -3.42 9.65 -39.39 -0.38 -3.80 16 26 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 27 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 28 H 0.11 0.77 6.80 -52.49 -0.36 0.41 16 29 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 30 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.06 0.57 7.56 -51.93 -0.39 0.17 16 32 H 0.07 0.50 6.52 -51.93 -0.34 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.51 7.22 -51.93 -0.37 0.14 16 36 H 0.06 0.50 7.57 -51.93 -0.39 0.11 16 37 H 0.40 4.69 7.30 -40.82 -0.30 4.39 16 38 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -30.86 366.68 -7.15 -38.02 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.47 Total: 7.80 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -1.70 Total: -18.78 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.43 Total: -33.63 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.86 -7.15 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325026148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.712 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.70 seconds