Wall clock time and date at job start Tue Mar 31 2020 10:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99800 * 2 1 4 4 C 1.52996 * 109.47144 * 124.99573 * 3 2 1 5 5 C 1.53002 * 109.46995 * 60.00062 * 4 3 2 6 6 C 1.52990 * 109.47457 * 300.00211 * 4 3 2 7 7 C 1.50700 * 109.46849 * 179.97438 * 4 3 2 8 8 O 1.21274 * 120.00375 * 0.02562 * 7 4 3 9 9 N 1.34783 * 119.99813 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00093 * 180.02562 * 9 7 4 11 11 C 1.50699 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96230 * 269.98024 * 11 10 9 13 13 C 1.38281 * 120.13505 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46908 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47373 * 240.00300 * 21 19 17 25 25 C 1.38073 * 119.96534 * 89.99825 * 11 10 9 26 26 H 1.08010 * 119.99734 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00440 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00256 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46571 * 4.99809 * 3 2 1 30 30 H 1.08998 * 109.47190 * 245.00256 * 3 2 1 31 31 H 1.09001 * 109.47118 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47346 * 300.00363 * 5 4 3 33 33 H 1.09003 * 109.47032 * 59.99971 * 5 4 3 34 34 H 1.09004 * 109.47581 * 299.99949 * 6 4 3 35 35 H 1.09007 * 109.47499 * 59.99717 * 6 4 3 36 36 H 1.09002 * 109.47490 * 179.97438 * 6 4 3 37 37 H 0.97004 * 119.99718 * 0.02562 * 9 7 4 38 38 H 1.09002 * 109.46490 * 60.00223 * 10 9 7 39 39 H 1.08992 * 109.46880 * 300.00477 * 10 9 7 40 40 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 41 41 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 42 42 H 1.08006 * 120.03715 * 180.31908 * 14 13 12 43 43 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03547 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 4.0245 0.1731 1.0560 6 6 2.2520 1.1964 2.4889 7 6 3.7888 2.6381 1.1812 8 8 3.5703 3.4644 0.3209 9 7 4.7059 2.8868 2.1371 10 6 5.4384 4.1556 2.1370 11 6 6.3963 4.1826 3.3001 12 6 5.9859 4.6860 4.5215 13 6 6.8620 4.7130 5.5910 14 6 8.1481 4.2312 5.4443 15 6 8.5648 3.7306 4.2181 16 8 9.8302 3.2619 4.0692 17 6 10.6686 3.4209 5.1130 18 1 10.3015 3.8289 6.0432 19 6 12.0021 3.0607 4.9922 20 7 12.4493 2.5642 3.8591 21 14 13.1639 3.2817 6.4382 22 1 12.4195 3.8553 7.5881 23 1 13.7306 1.9643 6.8236 24 1 14.2649 4.2006 6.0527 25 6 7.6826 3.7054 3.1455 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3584 2.1316 0.0895 30 1 2.6212 1.4027 -0.9314 31 1 4.7169 0.1933 1.8976 32 1 3.4795 -0.7709 1.0559 33 1 4.5823 0.2706 0.1246 34 1 1.5470 2.0228 2.5785 35 1 1.7070 0.2523 2.4890 36 1 2.9442 1.2159 3.3308 37 1 4.8810 2.2257 2.8250 38 1 4.7334 4.9820 2.2271 39 1 5.9957 4.2532 1.2055 40 1 4.9791 5.0586 4.6400 41 1 6.5388 5.1070 6.5431 42 1 8.8304 4.2478 6.2814 43 1 13.3822 2.3126 3.7745 44 1 8.0026 3.3132 2.1915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325026148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:19 Heat of formation + Delta-G solvation = -55.737761 kcal Electronic energy + Delta-G solvation = -23912.814293 eV Core-core repulsion = 20409.015222 eV Total energy + Delta-G solvation = -3503.799072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 6.79 seconds Orbital eigenvalues (eV) -41.39634 -40.73788 -38.58331 -37.55903 -35.83813 -34.30164 -33.75709 -32.04568 -30.75460 -28.28137 -27.76220 -27.49388 -26.90168 -23.92713 -23.25486 -22.40127 -21.07904 -19.96604 -19.45675 -18.83814 -17.67705 -17.25553 -16.83104 -16.61682 -16.21410 -16.09360 -15.86955 -15.54024 -15.29808 -15.04536 -14.78563 -14.41780 -14.27902 -13.95183 -13.81331 -13.58224 -13.33901 -13.25643 -13.04091 -12.96853 -12.60018 -12.56184 -12.38489 -12.28660 -12.09391 -12.05875 -11.82619 -11.80605 -11.22015 -10.85192 -10.74884 -10.17500 -10.11641 -9.75473 -9.04191 -8.47655 -6.16100 0.37550 0.69526 1.35741 1.43157 1.44491 1.53752 1.61416 2.16815 2.25823 2.84936 3.14830 3.39032 3.61139 3.74839 3.83514 3.89998 4.08288 4.22767 4.27579 4.30067 4.36205 4.40120 4.51903 4.65334 4.71922 4.73106 4.80001 4.81242 4.91295 4.96875 5.00645 5.10800 5.11552 5.14684 5.24607 5.30351 5.33171 5.36528 5.61496 5.69707 5.70912 5.79806 5.94812 6.01227 6.15519 6.51925 6.97358 7.19522 7.77529 8.75678 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.002637 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.295845 B =10613.740106 C =11087.816291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C -0.068 4.068 4 C -0.070 4.070 5 C -0.144 4.144 6 C -0.136 4.136 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.712 5.712 10 C 0.172 3.828 11 C -0.058 4.058 12 C -0.169 4.169 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.113 3.887 16 O -0.232 6.232 17 C -0.411 4.411 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.249 1.249 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.181 4.181 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.411 0.589 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.217 -3.978 0.153 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.172 4.172 3 C -0.106 4.106 4 C -0.073 4.073 5 C -0.201 4.201 6 C -0.193 4.193 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.363 5.363 10 C 0.049 3.951 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.253 4.253 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.487 4.487 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.201 4.201 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.071 -3.559 -0.729 21.382 hybrid contribution 1.285 -0.078 0.479 1.374 sum -19.786 -3.637 -0.250 20.119 Atomic orbital electron populations 1.24009 0.95795 1.02459 1.00488 1.22927 0.96131 0.97774 1.00356 1.20528 0.97131 0.96292 0.96601 1.20752 0.96036 0.91607 0.98906 1.21957 0.98252 0.97515 1.02366 1.21872 1.00034 1.03567 0.93862 1.21183 0.79108 0.89111 0.80011 1.90664 1.67288 1.49681 1.38776 1.46051 1.39786 1.19667 1.30782 1.20036 0.92686 0.87042 0.95341 1.19432 0.92221 0.98764 0.95456 1.20988 1.00803 1.05013 0.91940 1.21160 0.91529 0.96182 0.99773 1.21374 0.99002 1.07751 0.97220 1.19846 0.85930 0.93166 0.94787 1.83949 1.17893 1.70509 1.41526 1.21863 0.90082 1.44573 0.92213 0.87872 1.26585 0.98141 0.95865 1.01526 1.70188 1.16595 1.41907 1.27244 0.84532 0.77020 0.78611 0.76076 1.17268 1.19385 1.19594 1.20205 0.94073 1.08608 0.97230 0.86972 0.88885 0.85856 0.92000 0.91938 0.91671 0.88945 0.93021 0.92538 0.89586 0.91277 0.75271 0.89638 0.92131 0.83466 0.83308 0.86147 0.91880 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 14.32 67.78 0.97 -1.40 16 2 C -0.15 -2.15 7.65 25.65 0.20 -1.95 16 3 C -0.07 -1.28 4.02 29.85 0.12 -1.16 16 4 C -0.07 -1.29 0.64 -52.93 -0.03 -1.32 16 5 C -0.14 -2.33 8.11 71.98 0.58 -1.74 16 6 C -0.14 -1.94 8.12 71.98 0.58 -1.35 16 7 C 0.52 13.29 6.48 87.66 0.57 13.86 16 8 O -0.58 -19.54 15.98 -3.01 -0.05 -19.58 16 9 N -0.71 -17.26 5.33 -466.79 -2.49 -19.75 16 10 C 0.17 4.76 5.80 85.63 0.50 5.25 16 11 C -0.06 -1.83 5.25 -19.88 -0.10 -1.93 16 12 C -0.17 -4.72 9.70 22.30 0.22 -4.51 16 13 C -0.07 -2.12 10.04 22.25 0.22 -1.89 16 14 C -0.23 -9.52 9.17 22.39 0.21 -9.32 16 15 C 0.11 5.38 6.65 22.58 0.15 5.53 16 16 O -0.23 -13.62 9.76 -22.74 -0.22 -13.84 16 17 C -0.41 -23.35 9.49 67.92 0.64 -22.70 16 18 H 0.10 5.33 5.21 -2.91 -0.02 5.32 16 19 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 20 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 21 Si 1.02 42.03 29.55 68.60 2.03 44.05 16 22 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 25 C -0.18 -7.38 9.65 22.39 0.22 -7.17 16 26 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 27 H 0.09 1.20 7.84 -2.91 -0.02 1.17 16 28 H 0.12 1.39 6.80 -2.91 -0.02 1.37 16 29 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 30 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 31 H 0.06 1.04 7.56 -2.39 -0.02 1.02 16 32 H 0.09 1.09 6.52 -2.39 -0.02 1.08 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.98 7.22 -2.38 -0.02 0.96 16 36 H 0.07 0.89 7.57 -2.39 -0.02 0.88 16 37 H 0.41 8.71 7.30 -92.71 -0.68 8.03 16 38 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 39 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 40 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.12 5.00 5.64 -2.91 -0.02 4.99 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -72.03 366.68 5.39 -66.64 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.32 Total: 30.84 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 5.50 Total: -32.67 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -2.19 Total: -75.43 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.27 Total: -33.42 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.03 5.39 -66.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325026148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.903 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.79 seconds