Wall clock time and date at job start Tue Mar 31 2020 10:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99977 * 2 1 4 4 C 1.50704 * 120.00347 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47238 * 94.99841 * 4 2 1 6 6 C 1.50699 * 109.47103 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99873 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99874 * 180.02562 * 6 5 4 9 9 C 1.39917 * 120.00075 * 185.27630 * 8 6 5 10 10 C 1.38933 * 120.04163 * 213.30012 * 9 8 6 11 11 C 1.38126 * 120.03704 * 180.02562 * 10 9 8 12 12 C 1.38215 * 120.12639 * 359.68018 * 11 10 9 13 13 C 1.38762 * 120.08446 * 0.59353 * 12 11 10 14 14 O 1.35893 * 120.02114 * 179.69880 * 13 12 11 15 15 C 1.42897 * 117.00074 * 359.73109 * 14 13 12 16 16 C 1.53004 * 109.47092 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46777 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00434 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00189 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46574 * 60.00379 * 21 19 17 23 23 H 1.48493 * 109.47134 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47056 * 300.00353 * 21 19 17 25 25 C 1.38631 * 119.95633 * 359.42885 * 13 12 11 26 26 H 1.08001 * 119.99923 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00278 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47300 * 269.99891 * 3 2 1 29 29 H 1.08996 * 109.47221 * 29.99959 * 3 2 1 30 30 H 1.09007 * 109.47160 * 149.99841 * 3 2 1 31 31 H 1.09003 * 109.46601 * 335.00287 * 4 2 1 32 32 H 1.08997 * 109.47374 * 215.00478 * 4 2 1 33 33 H 1.08997 * 109.46799 * 60.00274 * 5 4 2 34 34 H 1.09003 * 109.47059 * 300.00540 * 5 4 2 35 35 H 0.96997 * 120.00199 * 5.26862 * 8 6 5 36 36 H 1.08000 * 119.98133 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.93323 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.95600 * 180.30031 * 12 11 10 39 39 H 1.09001 * 109.46881 * 299.99974 * 15 14 13 40 40 H 1.08998 * 109.47261 * 59.99940 * 15 14 13 41 41 H 1.09000 * 109.46979 * 299.99300 * 16 15 14 42 42 H 1.08998 * 109.47098 * 59.99863 * 16 15 14 43 43 H 0.96994 * 120.00572 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.05730 * 180.25295 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1804 -2.9886 -1.4384 7 8 3.4045 -3.5600 -0.3922 8 7 3.6058 -3.5206 -2.6013 9 6 4.2068 -4.7841 -2.6143 10 6 5.2140 -5.0659 -3.5289 11 6 5.8068 -6.3134 -3.5419 12 6 5.4048 -7.2820 -2.6416 13 6 4.3955 -7.0080 -1.7297 14 8 3.9970 -7.9632 -0.8491 15 6 4.6566 -9.2288 -0.9224 16 6 4.0784 -10.1674 0.1386 17 6 4.7745 -11.5018 0.0618 18 1 5.5512 -11.6643 -0.6708 19 6 4.4197 -12.5152 0.9268 20 7 3.4735 -12.3175 1.8186 21 14 5.2820 -14.1695 0.8311 22 1 6.7357 -13.9846 1.0721 23 1 4.7218 -15.0800 1.8617 24 1 5.0745 -14.7587 -0.5162 25 6 3.7977 -5.7572 -1.7138 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 2.2451 1.6198 -1.0276 29 1 1.4744 2.0647 0.5138 30 1 3.0159 1.1748 0.5139 31 1 1.4386 -2.0856 0.4334 32 1 2.9742 -1.1991 0.5889 33 1 3.0523 -0.9027 -1.8717 34 1 1.5167 -1.7892 -2.0273 35 1 3.4953 -3.0277 -3.4293 36 1 5.5335 -4.3091 -4.2300 37 1 6.5893 -6.5308 -4.2539 38 1 5.8736 -8.2549 -2.6511 39 1 4.5050 -9.6607 -1.9116 40 1 5.7234 -9.0933 -0.7446 41 1 4.2304 -9.7352 1.1277 42 1 3.0115 -10.3029 -0.0387 43 1 3.2237 -13.0304 2.4268 44 1 3.0148 -5.5409 -1.0020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335731737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:35 Heat of formation + Delta-G solvation = -50.869305 kcal Electronic energy + Delta-G solvation = -23164.103695 eV Core-core repulsion = 19660.515735 eV Total energy + Delta-G solvation = -3503.587960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69138 -39.31548 -37.38076 -36.59319 -34.58245 -33.32739 -31.80909 -30.82628 -29.49084 -28.96303 -27.62509 -25.33090 -24.84082 -22.84257 -22.05410 -20.88575 -20.13221 -18.76234 -18.34896 -17.20039 -16.39810 -16.20834 -15.93501 -15.46131 -15.38018 -15.26027 -14.84044 -14.51809 -14.44343 -14.15127 -13.60965 -13.49073 -13.09284 -12.87584 -12.64064 -12.43476 -12.29509 -12.05112 -11.77541 -11.66974 -11.40903 -11.38115 -11.21827 -10.89465 -10.83717 -10.54713 -10.32428 -9.93058 -9.80131 -9.62547 -9.37414 -9.28073 -8.42531 -8.23533 -7.80748 -6.07183 -4.12032 1.35892 1.64901 1.84753 2.47319 2.84927 3.30591 3.34793 3.36658 3.85568 3.98520 4.31302 4.44275 4.53717 4.61403 4.80984 4.88826 5.00719 5.16681 5.17505 5.19563 5.28816 5.29483 5.38319 5.47316 5.54323 5.58636 5.63939 5.69125 5.84329 5.91841 6.05721 6.07266 6.28130 6.30341 6.37435 6.52556 6.54271 6.61290 6.76899 6.99443 7.22173 7.54126 7.68071 7.84155 7.95474 8.10064 8.26844 8.93361 9.51913 11.04354 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002347 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.357420 B =11924.759001 C =13189.146248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.073 4.073 5 C -0.131 4.131 6 C 0.507 3.493 7 O -0.509 6.509 8 N -0.674 5.674 9 C 0.177 3.823 10 C -0.197 4.197 11 C -0.061 4.061 12 C -0.226 4.226 13 C 0.165 3.835 14 O -0.312 6.312 15 C 0.065 3.935 16 C 0.025 3.975 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.164 4.164 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.410 0.590 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 26.264 -11.584 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.127 4.127 3 C -0.178 4.178 4 C -0.111 4.111 5 C -0.171 4.171 6 C 0.294 3.706 7 O -0.382 6.382 8 N -0.320 5.320 9 C 0.084 3.916 10 C -0.218 4.218 11 C -0.080 4.080 12 C -0.246 4.246 13 C 0.117 3.883 14 O -0.225 6.225 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.185 4.185 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.245 0.755 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.754 25.801 -10.475 27.901 hybrid contribution 0.549 -0.799 -0.617 1.149 sum -1.204 25.002 -11.092 27.379 Atomic orbital electron populations 1.23754 0.95258 1.02009 1.02068 1.21755 0.95424 0.95600 0.99927 1.20887 1.00329 0.94513 1.02046 1.20466 1.01189 0.94524 0.94942 1.21634 1.01104 0.94393 0.99951 1.20954 0.79074 0.87246 0.83322 1.90805 1.54196 1.62144 1.31060 1.43530 1.60318 1.17491 1.10651 1.17297 0.93417 0.84019 0.96914 1.20615 0.99187 0.98560 1.03423 1.20664 0.98034 0.92157 0.97139 1.21386 1.01666 1.01771 0.99753 1.18957 0.91786 0.89034 0.88564 1.86190 1.60706 1.22840 1.52763 1.23353 0.96129 0.79688 1.01743 1.19127 0.97305 0.91776 0.93018 1.20933 1.20701 0.96475 1.18371 0.92399 1.25000 0.95113 0.99023 0.95106 1.69969 1.29503 1.33423 1.19833 0.86539 0.79790 0.83158 0.77823 1.20099 1.21129 1.20110 1.20257 1.04447 0.90391 1.03399 0.88298 0.88487 0.91493 0.91873 0.91702 0.90192 0.90240 0.88610 0.88442 0.75457 0.86138 0.85707 0.85037 0.93046 0.93043 0.95339 0.95388 0.92653 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 13.89 29.02 0.40 -0.93 16 2 C -0.13 -0.90 5.31 -101.06 -0.54 -1.44 16 3 C -0.12 -0.68 10.03 36.01 0.36 -0.32 16 4 C -0.07 -0.62 4.67 -27.88 -0.13 -0.75 16 5 C -0.13 -0.92 5.68 -27.88 -0.16 -1.08 16 6 C 0.51 5.68 7.57 -10.99 -0.08 5.60 16 7 O -0.51 -8.21 13.67 5.55 0.08 -8.14 16 8 N -0.67 -6.74 5.34 -9.88 -0.05 -6.80 16 9 C 0.18 2.42 6.28 -83.72 -0.53 1.90 16 10 C -0.20 -2.36 9.96 -39.37 -0.39 -2.75 16 11 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 12 C -0.23 -3.64 9.04 -39.40 -0.36 -3.99 16 13 C 0.16 3.09 6.68 -39.24 -0.26 2.82 16 14 O -0.31 -6.87 10.13 -19.40 -0.20 -7.07 16 15 C 0.06 1.44 4.68 37.16 0.17 1.62 16 16 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 17 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.16 -2.85 8.59 -39.25 -0.34 -3.18 16 26 H 0.10 0.68 7.99 -52.49 -0.42 0.27 16 27 H 0.10 0.56 8.04 -52.49 -0.42 0.14 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.32 8.06 -51.93 -0.42 -0.10 16 30 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.08 0.80 7.94 -51.93 -0.41 0.38 16 32 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 2.39 8.82 -40.82 -0.36 2.03 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.13 2.05 6.29 -52.48 -0.33 1.72 16 39 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 40 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.14 2.60 6.41 -52.49 -0.34 2.27 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -33.95 373.49 -8.46 -42.41 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.83 Total: 0.42 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.80 Total: -16.80 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.68 Total: -32.99 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.12 Total: -15.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.95 -8.46 -42.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335731737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.455 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds