Wall clock time and date at job start Tue Mar 31 2020 10:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99977 * 2 1 4 4 C 1.50704 * 120.00347 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47238 * 94.99841 * 4 2 1 6 6 C 1.50699 * 109.47103 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99873 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99874 * 180.02562 * 6 5 4 9 9 C 1.39917 * 120.00075 * 185.27630 * 8 6 5 10 10 C 1.38933 * 120.04163 * 213.30012 * 9 8 6 11 11 C 1.38126 * 120.03704 * 180.02562 * 10 9 8 12 12 C 1.38215 * 120.12639 * 359.68018 * 11 10 9 13 13 C 1.38762 * 120.08446 * 0.59353 * 12 11 10 14 14 O 1.35893 * 120.02114 * 179.69880 * 13 12 11 15 15 C 1.42897 * 117.00074 * 359.73109 * 14 13 12 16 16 C 1.53004 * 109.47092 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46777 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00434 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00189 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46574 * 60.00379 * 21 19 17 23 23 H 1.48493 * 109.47134 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47056 * 300.00353 * 21 19 17 25 25 C 1.38631 * 119.95633 * 359.42885 * 13 12 11 26 26 H 1.08001 * 119.99923 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00278 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47300 * 269.99891 * 3 2 1 29 29 H 1.08996 * 109.47221 * 29.99959 * 3 2 1 30 30 H 1.09007 * 109.47160 * 149.99841 * 3 2 1 31 31 H 1.09003 * 109.46601 * 335.00287 * 4 2 1 32 32 H 1.08997 * 109.47374 * 215.00478 * 4 2 1 33 33 H 1.08997 * 109.46799 * 60.00274 * 5 4 2 34 34 H 1.09003 * 109.47059 * 300.00540 * 5 4 2 35 35 H 0.96997 * 120.00199 * 5.26862 * 8 6 5 36 36 H 1.08000 * 119.98133 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.93323 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.95600 * 180.30031 * 12 11 10 39 39 H 1.09001 * 109.46881 * 299.99974 * 15 14 13 40 40 H 1.08998 * 109.47261 * 59.99940 * 15 14 13 41 41 H 1.09000 * 109.46979 * 299.99300 * 16 15 14 42 42 H 1.08998 * 109.47098 * 59.99863 * 16 15 14 43 43 H 0.96994 * 120.00572 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.05730 * 180.25295 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1804 -2.9886 -1.4384 7 8 3.4045 -3.5600 -0.3922 8 7 3.6058 -3.5206 -2.6013 9 6 4.2068 -4.7841 -2.6143 10 6 5.2140 -5.0659 -3.5289 11 6 5.8068 -6.3134 -3.5419 12 6 5.4048 -7.2820 -2.6416 13 6 4.3955 -7.0080 -1.7297 14 8 3.9970 -7.9632 -0.8491 15 6 4.6566 -9.2288 -0.9224 16 6 4.0784 -10.1674 0.1386 17 6 4.7745 -11.5018 0.0618 18 1 5.5512 -11.6643 -0.6708 19 6 4.4197 -12.5152 0.9268 20 7 3.4735 -12.3175 1.8186 21 14 5.2820 -14.1695 0.8311 22 1 6.7357 -13.9846 1.0721 23 1 4.7218 -15.0800 1.8617 24 1 5.0745 -14.7587 -0.5162 25 6 3.7977 -5.7572 -1.7138 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 2.2451 1.6198 -1.0276 29 1 1.4744 2.0647 0.5138 30 1 3.0159 1.1748 0.5139 31 1 1.4386 -2.0856 0.4334 32 1 2.9742 -1.1991 0.5889 33 1 3.0523 -0.9027 -1.8717 34 1 1.5167 -1.7892 -2.0273 35 1 3.4953 -3.0277 -3.4293 36 1 5.5335 -4.3091 -4.2300 37 1 6.5893 -6.5308 -4.2539 38 1 5.8736 -8.2549 -2.6511 39 1 4.5050 -9.6607 -1.9116 40 1 5.7234 -9.0933 -0.7446 41 1 4.2304 -9.7352 1.1277 42 1 3.0115 -10.3029 -0.0387 43 1 3.2237 -13.0304 2.4268 44 1 3.0148 -5.5409 -1.0020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335731737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:34 Heat of formation + Delta-G solvation = -71.911838 kcal Electronic energy + Delta-G solvation = -23165.016168 eV Core-core repulsion = 19660.515735 eV Total energy + Delta-G solvation = -3504.500432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73586 -40.61285 -38.59406 -37.30159 -35.75736 -35.35670 -32.64630 -32.48194 -30.91528 -30.12108 -28.08792 -27.05049 -25.93928 -24.01057 -23.57659 -22.30869 -21.25599 -19.69486 -19.34130 -18.44903 -18.03219 -17.23519 -17.05015 -16.92370 -16.76150 -16.66540 -16.25205 -15.56317 -15.33206 -14.94664 -14.52379 -14.46041 -14.34487 -14.30110 -14.11788 -13.58041 -13.37459 -13.19972 -13.01303 -12.73445 -12.64810 -12.59808 -12.52663 -12.23385 -11.99763 -11.83593 -11.79355 -11.61716 -11.45382 -11.25229 -10.92502 -10.63335 -9.92386 -9.43596 -9.02518 -8.27704 -6.42418 0.21951 0.47094 1.29406 1.39668 1.44654 1.52590 1.55602 1.96352 2.30015 2.52717 2.81816 3.06186 3.59719 3.89565 3.95804 3.98599 4.13557 4.18893 4.23885 4.24470 4.26523 4.34255 4.43815 4.56769 4.61734 4.69025 4.70770 4.80006 4.89190 4.96109 5.09464 5.15013 5.19446 5.24640 5.27127 5.33022 5.39596 5.42768 5.50367 5.66512 5.75245 5.90630 5.98725 6.04933 6.40566 6.54288 6.72234 7.13118 7.27782 8.85525 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002347 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.357420 B =11924.759001 C =13189.146248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.075 4.075 5 C -0.117 4.117 6 C 0.502 3.498 7 O -0.566 6.566 8 N -0.657 5.657 9 C 0.178 3.822 10 C -0.175 4.175 11 C -0.053 4.053 12 C -0.236 4.236 13 C 0.123 3.877 14 O -0.347 6.347 15 C 0.085 3.915 16 C 0.027 3.973 17 C -0.546 4.546 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.980 3.020 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.261 1.261 25 C -0.189 4.189 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.434 0.566 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.065 0.935 40 H 0.061 0.939 41 H -0.006 1.006 42 H -0.003 1.003 43 H 0.267 0.733 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 27.982 -15.047 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.130 4.130 3 C -0.177 4.177 4 C -0.113 4.113 5 C -0.157 4.157 6 C 0.292 3.708 7 O -0.444 6.444 8 N -0.305 5.305 9 C 0.084 3.916 10 C -0.195 4.195 11 C -0.071 4.071 12 C -0.255 4.255 13 C 0.077 3.923 14 O -0.261 6.261 15 C 0.011 3.989 16 C -0.010 4.010 17 C -0.584 4.584 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.186 1.186 25 C -0.210 4.210 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.275 0.725 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.150 0.850 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.076 0.924 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.100 27.576 -14.002 30.927 hybrid contribution -0.073 -1.162 0.426 1.240 sum 0.028 26.413 -13.576 29.698 Atomic orbital electron populations 1.23862 0.95316 1.02411 1.01841 1.21770 0.95488 0.95479 1.00226 1.20910 0.99987 0.93568 1.03189 1.20411 1.00238 0.94790 0.95822 1.21659 1.01984 0.92644 0.99375 1.21792 0.78252 0.88100 0.82639 1.90801 1.56370 1.63927 1.33283 1.43458 1.59287 1.16159 1.11599 1.17461 0.93683 0.84476 0.96028 1.21147 0.96805 0.99145 1.02404 1.21160 0.98176 0.91447 0.96303 1.21530 1.01052 1.02941 1.00023 1.19274 0.94264 0.88863 0.89911 1.86093 1.61782 1.23260 1.54968 1.22899 0.95965 0.79667 1.00408 1.18980 0.95833 0.93227 0.92973 1.21366 1.21141 0.96964 1.18905 0.90784 1.26127 0.95749 1.03763 0.94383 1.70132 1.31248 1.35024 1.20806 0.85274 0.78757 0.77243 0.78397 1.18746 1.20807 1.18577 1.20243 1.04819 0.91329 1.04615 0.88996 0.87068 0.89796 0.91310 0.91975 0.92811 0.91743 0.85046 0.86120 0.72541 0.81252 0.81615 0.84980 0.91635 0.92082 0.98808 0.98496 0.92426 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.53 13.89 67.79 0.94 -1.59 16 2 C -0.13 -1.70 5.31 -16.48 -0.09 -1.79 16 3 C -0.12 -1.10 10.03 71.24 0.71 -0.39 16 4 C -0.07 -1.28 4.67 29.85 0.14 -1.14 16 5 C -0.12 -1.43 5.68 29.85 0.17 -1.26 16 6 C 0.50 11.03 7.57 87.66 0.66 11.69 16 7 O -0.57 -19.43 13.67 -3.05 -0.04 -19.48 16 8 N -0.66 -11.71 5.34 -303.55 -1.62 -13.33 16 9 C 0.18 4.61 6.28 38.14 0.24 4.85 16 10 C -0.17 -3.45 9.96 22.41 0.22 -3.23 16 11 C -0.05 -1.17 10.03 22.24 0.22 -0.95 16 12 C -0.24 -7.42 9.04 22.39 0.20 -7.21 16 13 C 0.12 4.83 6.68 22.49 0.15 4.98 16 14 O -0.35 -16.47 10.13 -92.35 -0.94 -17.41 16 15 C 0.08 3.96 4.68 71.98 0.34 4.30 16 16 C 0.03 1.56 5.34 29.85 0.16 1.72 16 17 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 18 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 20 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 21 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 C -0.19 -6.88 8.59 22.49 0.19 -6.69 16 26 H 0.09 1.28 7.99 -2.91 -0.02 1.25 16 27 H 0.11 1.10 8.04 -2.91 -0.02 1.07 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.57 8.06 -2.39 -0.02 0.55 16 30 H 0.06 0.61 8.09 -2.38 -0.02 0.59 16 31 H 0.05 1.18 7.94 -2.39 -0.02 1.16 16 32 H 0.06 1.28 8.06 -2.39 -0.02 1.26 16 33 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.43 3.28 8.82 -92.71 -0.82 2.46 16 36 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.13 4.03 6.29 -2.91 -0.02 4.02 16 39 H 0.07 2.82 7.67 -2.39 -0.02 2.80 16 40 H 0.06 2.68 7.65 -2.39 -0.02 2.66 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.11 4.53 6.41 -2.91 -0.02 4.51 16 Total: -1.00 -81.06 373.49 4.85 -76.21 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.17 Total: 13.80 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.96 Total: -27.89 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.34 Total: -71.67 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.98 Total: -36.88 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -81.06 4.85 -76.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335731737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.300 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds