Wall clock time and date at job start Tue Mar 31 2020 10:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 C 1.50693 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00221 * 274.99515 * 4 3 2 6 6 C 1.33003 * 120.00263 * 94.99984 * 4 3 2 7 7 C 1.47093 * 120.00117 * 173.17552 * 6 4 3 8 8 O 1.21618 * 120.00497 * 353.80402 * 7 6 4 9 9 N 1.34776 * 120.00055 * 173.80613 * 7 6 4 10 10 C 1.46501 * 120.00075 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.38327 * 119.96753 * 270.02006 * 11 10 9 13 13 C 1.38273 * 120.13968 * 179.97438 * 12 11 10 14 14 C 1.38121 * 120.07130 * 359.76721 * 13 12 11 15 15 C 1.38860 * 119.92937 * 0.50891 * 14 13 12 16 16 O 1.35754 * 120.07039 * 179.74084 * 15 14 13 17 17 C 1.34831 * 116.99862 * 358.19607 * 16 15 14 18 18 H 1.07997 * 119.99878 * 4.96973 * 17 16 15 19 19 C 1.38655 * 119.99727 * 184.96686 * 17 16 15 20 20 N 1.31554 * 119.99992 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99834 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47375 * 89.99885 * 21 19 17 23 23 H 1.48501 * 109.46676 * 209.99961 * 21 19 17 24 24 H 1.48501 * 109.46995 * 329.99587 * 21 19 17 25 25 C 1.38088 * 119.96652 * 89.99858 * 11 10 9 26 26 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46858 * 300.00380 * 1 2 3 28 28 H 1.08998 * 109.47053 * 60.00361 * 1 2 3 29 29 H 1.08992 * 109.47380 * 239.99516 * 2 1 3 30 30 H 1.08998 * 109.47053 * 119.99639 * 2 1 3 31 31 H 1.08992 * 109.47411 * 59.99535 * 3 2 1 32 32 H 1.08998 * 109.46886 * 299.99742 * 3 2 1 33 33 H 1.08994 * 109.46666 * 263.62928 * 5 4 3 34 34 H 1.08997 * 109.46650 * 23.62734 * 5 4 3 35 35 H 1.08996 * 109.47212 * 143.62671 * 5 4 3 36 36 H 1.07999 * 119.99357 * 353.17152 * 6 4 3 37 37 H 0.97002 * 119.99814 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.47524 * 60.00464 * 10 9 7 39 39 H 1.09001 * 109.47266 * 300.00050 * 10 9 7 40 40 H 1.07996 * 119.92371 * 359.97438 * 12 11 10 41 41 H 1.08006 * 119.96670 * 180.02562 * 13 12 11 42 42 H 1.08007 * 120.03996 * 180.27588 * 14 13 12 43 43 H 0.97003 * 119.99593 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.03526 * 0.04662 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3000 1.3291 1.3011 6 6 4.2125 1.5427 -1.1465 7 6 5.6756 1.6939 -1.1372 8 8 6.2652 1.8404 -0.0836 9 7 6.3630 1.6700 -2.2963 10 6 7.8201 1.8211 -2.2870 11 6 8.3404 1.7599 -3.7000 12 6 8.7012 0.5436 -4.2514 13 6 9.1785 0.4833 -5.5477 14 6 9.2920 1.6374 -6.2979 15 6 8.9361 2.8607 -5.7454 16 8 9.0515 3.9975 -6.4784 17 6 9.5535 3.8745 -7.7237 18 1 9.7677 2.8952 -8.1253 19 6 9.7948 5.0055 -8.4886 20 7 9.5333 6.1985 -7.9996 21 14 10.4897 4.8352 -10.2143 22 1 9.3744 4.7181 -11.1877 23 1 11.3067 6.0319 -10.5391 24 1 11.3404 3.6202 -10.2876 25 6 8.4562 2.9180 -4.4432 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.5802 2.3241 1.6466 34 1 3.6659 0.8505 2.0475 35 1 5.1983 0.7305 1.1498 36 1 3.6786 1.5130 -2.0848 37 1 5.8927 1.5535 -3.1367 38 1 8.2651 1.0174 -1.7006 39 1 8.0830 2.7821 -1.8448 40 1 8.6098 -0.3606 -3.6681 41 1 9.4590 -0.4679 -5.9756 42 1 9.6607 1.5891 -7.3120 43 1 9.7018 6.9897 -8.5349 44 1 8.1747 3.8673 -4.0121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339019312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:08 Heat of formation + Delta-G solvation = -43.904439 kcal Electronic energy + Delta-G solvation = -23155.139484 eV Core-core repulsion = 19651.853543 eV Total energy + Delta-G solvation = -3503.285940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.86822 -39.06010 -37.10094 -36.54626 -34.48561 -33.00256 -32.34668 -30.91417 -29.21009 -27.97315 -27.33770 -25.77153 -24.99424 -22.32574 -21.71790 -21.02832 -20.72864 -18.93200 -17.70435 -17.14343 -16.81945 -15.83988 -15.41912 -15.15064 -15.03398 -14.68874 -14.52282 -14.38238 -13.90705 -13.73482 -13.62340 -13.44000 -13.14442 -12.82367 -12.62399 -12.39635 -12.15207 -12.04631 -11.78759 -11.66548 -11.59876 -11.57356 -11.37510 -10.97819 -10.92278 -10.83130 -10.70016 -10.48484 -9.60022 -9.41716 -9.29436 -8.90297 -8.79713 -8.23940 -7.33193 -6.50112 -4.09586 1.29420 1.91319 2.26884 3.09022 3.10382 3.15264 3.33846 3.49438 3.91773 4.42206 4.52515 4.57656 4.72159 4.83869 4.92673 5.04561 5.06725 5.15658 5.26576 5.31133 5.40245 5.45766 5.49995 5.54566 5.68027 5.73389 5.75568 5.76922 5.84775 5.92152 5.94160 5.99007 6.07938 6.25104 6.38790 6.42799 6.55295 6.58385 6.81567 6.98904 7.18892 7.27014 7.35081 7.66282 7.72650 7.94126 8.35205 8.95244 9.64000 10.67643 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002309 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.073484 B =12125.016884 C =12505.850452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.033 4.033 5 C -0.122 4.122 6 C -0.228 4.228 7 C 0.542 3.458 8 O -0.547 6.547 9 N -0.718 5.718 10 C 0.168 3.832 11 C -0.072 4.072 12 C -0.196 4.196 13 C -0.076 4.076 14 C -0.227 4.227 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.172 4.172 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.271 0.729 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 -11.548 12.261 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.035 4.035 5 C -0.178 4.178 6 C -0.249 4.249 7 C 0.332 3.668 8 O -0.428 6.428 9 N -0.368 5.368 10 C 0.046 3.954 11 C -0.073 4.073 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.246 4.246 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.191 4.191 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.589 -10.941 12.965 21.125 hybrid contribution 0.206 -0.130 -1.564 1.583 sum -12.383 -11.071 11.401 20.147 Atomic orbital electron populations 1.21791 0.95505 1.01809 1.01949 1.21490 0.95872 0.95720 1.02632 1.20865 0.90915 0.97839 1.03409 1.22509 0.95337 0.90155 0.95451 1.21117 1.00068 1.03386 0.93238 1.22418 0.93349 1.10200 0.98940 1.18559 0.87823 0.76849 0.83579 1.90745 1.71348 1.50156 1.30565 1.46046 1.07968 1.73687 1.09111 1.20129 0.79343 1.02212 0.93760 1.19282 1.00602 0.93229 0.94168 1.20475 1.08396 0.96247 0.96408 1.20744 0.97587 0.97165 0.93924 1.21240 1.09248 0.92356 1.01773 1.19332 0.92989 0.87107 0.90946 1.83989 1.71067 1.26687 1.26150 1.21325 1.43128 0.94759 0.87754 0.89017 1.25305 0.96940 0.94197 1.00065 1.70038 1.44411 0.97679 1.37394 0.85704 0.78929 0.78380 0.80374 1.19846 1.20216 1.19177 1.20082 1.08100 0.98018 0.92943 0.92593 0.92668 0.92567 0.91620 0.91683 0.90379 0.90614 0.90364 0.92941 0.89289 0.85693 0.76255 0.91035 0.90932 0.87536 0.87297 0.85445 0.91941 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 3 C -0.09 -0.68 5.36 -27.88 -0.15 -0.83 16 4 C -0.03 -0.32 5.36 -101.16 -0.54 -0.86 16 5 C -0.12 -1.27 8.47 36.01 0.30 -0.96 16 6 C -0.23 -2.49 9.60 -37.81 -0.36 -2.86 16 7 C 0.54 7.54 7.62 -12.67 -0.10 7.44 16 8 O -0.55 -9.05 13.28 5.26 0.07 -8.98 16 9 N -0.72 -9.71 5.54 -62.68 -0.35 -10.06 16 10 C 0.17 2.52 5.80 -5.19 -0.03 2.49 16 11 C -0.07 -1.23 5.25 -104.64 -0.55 -1.78 16 12 C -0.20 -3.23 9.70 -39.54 -0.38 -3.61 16 13 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 14 C -0.23 -4.75 9.17 -39.39 -0.36 -5.11 16 15 C 0.15 3.52 6.65 -39.11 -0.26 3.26 16 16 O -0.18 -4.91 9.76 0.03 0.00 -4.91 16 17 C -0.39 -10.78 9.48 30.89 0.29 -10.49 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 21 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.17 -3.50 9.65 -39.39 -0.38 -3.88 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 33 H 0.08 0.88 8.02 -51.93 -0.42 0.47 16 34 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.09 1.11 6.18 -51.93 -0.32 0.79 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.40 4.90 8.45 -40.82 -0.34 4.55 16 38 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.13 2.68 5.62 -52.48 -0.29 2.38 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -30.94 371.72 -8.43 -39.37 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.69 Total: 7.36 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.80 Total: -19.36 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.41 Total: -34.24 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.07 Total: -13.89 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.94 -8.43 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339019312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.531 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds