Wall clock time and date at job start Tue Mar 31 2020 10:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 C 1.50693 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00221 * 274.99515 * 4 3 2 6 6 C 1.33003 * 120.00263 * 94.99984 * 4 3 2 7 7 C 1.47093 * 120.00117 * 173.17552 * 6 4 3 8 8 O 1.21618 * 120.00497 * 353.80402 * 7 6 4 9 9 N 1.34776 * 120.00055 * 173.80613 * 7 6 4 10 10 C 1.46501 * 120.00075 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.38327 * 119.96753 * 270.02006 * 11 10 9 13 13 C 1.38273 * 120.13968 * 179.97438 * 12 11 10 14 14 C 1.38121 * 120.07130 * 359.76721 * 13 12 11 15 15 C 1.38860 * 119.92937 * 0.50891 * 14 13 12 16 16 O 1.35754 * 120.07039 * 179.74084 * 15 14 13 17 17 C 1.34831 * 116.99862 * 358.19607 * 16 15 14 18 18 H 1.07997 * 119.99878 * 4.96973 * 17 16 15 19 19 C 1.38655 * 119.99727 * 184.96686 * 17 16 15 20 20 N 1.31554 * 119.99992 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99834 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47375 * 89.99885 * 21 19 17 23 23 H 1.48501 * 109.46676 * 209.99961 * 21 19 17 24 24 H 1.48501 * 109.46995 * 329.99587 * 21 19 17 25 25 C 1.38088 * 119.96652 * 89.99858 * 11 10 9 26 26 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46858 * 300.00380 * 1 2 3 28 28 H 1.08998 * 109.47053 * 60.00361 * 1 2 3 29 29 H 1.08992 * 109.47380 * 239.99516 * 2 1 3 30 30 H 1.08998 * 109.47053 * 119.99639 * 2 1 3 31 31 H 1.08992 * 109.47411 * 59.99535 * 3 2 1 32 32 H 1.08998 * 109.46886 * 299.99742 * 3 2 1 33 33 H 1.08994 * 109.46666 * 263.62928 * 5 4 3 34 34 H 1.08997 * 109.46650 * 23.62734 * 5 4 3 35 35 H 1.08996 * 109.47212 * 143.62671 * 5 4 3 36 36 H 1.07999 * 119.99357 * 353.17152 * 6 4 3 37 37 H 0.97002 * 119.99814 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.47524 * 60.00464 * 10 9 7 39 39 H 1.09001 * 109.47266 * 300.00050 * 10 9 7 40 40 H 1.07996 * 119.92371 * 359.97438 * 12 11 10 41 41 H 1.08006 * 119.96670 * 180.02562 * 13 12 11 42 42 H 1.08007 * 120.03996 * 180.27588 * 14 13 12 43 43 H 0.97003 * 119.99593 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.03526 * 0.04662 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3000 1.3291 1.3011 6 6 4.2125 1.5427 -1.1465 7 6 5.6756 1.6939 -1.1372 8 8 6.2652 1.8404 -0.0836 9 7 6.3630 1.6700 -2.2963 10 6 7.8201 1.8211 -2.2870 11 6 8.3404 1.7599 -3.7000 12 6 8.7012 0.5436 -4.2514 13 6 9.1785 0.4833 -5.5477 14 6 9.2920 1.6374 -6.2979 15 6 8.9361 2.8607 -5.7454 16 8 9.0515 3.9975 -6.4784 17 6 9.5535 3.8745 -7.7237 18 1 9.7677 2.8952 -8.1253 19 6 9.7948 5.0055 -8.4886 20 7 9.5333 6.1985 -7.9996 21 14 10.4897 4.8352 -10.2143 22 1 9.3744 4.7181 -11.1877 23 1 11.3067 6.0319 -10.5391 24 1 11.3404 3.6202 -10.2876 25 6 8.4562 2.9180 -4.4432 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.5802 2.3241 1.6466 34 1 3.6659 0.8505 2.0475 35 1 5.1983 0.7305 1.1498 36 1 3.6786 1.5130 -2.0848 37 1 5.8927 1.5535 -3.1367 38 1 8.2651 1.0174 -1.7006 39 1 8.0830 2.7821 -1.8448 40 1 8.6098 -0.3606 -3.6681 41 1 9.4590 -0.4679 -5.9756 42 1 9.6607 1.5891 -7.3120 43 1 9.7018 6.9897 -8.5349 44 1 8.1747 3.8673 -4.0121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339019312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:07 Heat of formation + Delta-G solvation = -61.906707 kcal Electronic energy + Delta-G solvation = -23155.920121 eV Core-core repulsion = 19651.853543 eV Total energy + Delta-G solvation = -3504.066577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10063 -40.60256 -38.56587 -37.49290 -35.73626 -34.29570 -33.67787 -32.31943 -30.82403 -28.99701 -27.98598 -27.46082 -26.47571 -23.31007 -23.01658 -22.41544 -21.80786 -20.04764 -19.35119 -18.74519 -17.93755 -16.89999 -16.80035 -16.55361 -16.11589 -16.03814 -15.80556 -15.54632 -15.47791 -14.97328 -14.61308 -14.47114 -14.33110 -14.02739 -13.89497 -13.64984 -13.47055 -13.23412 -13.03157 -12.69985 -12.53475 -12.51868 -12.38227 -12.28156 -12.24002 -12.12005 -12.09463 -11.48223 -11.22130 -10.83439 -10.68319 -10.25946 -9.83440 -9.75173 -9.04403 -8.47876 -6.16472 0.37917 0.41399 0.69427 1.35389 1.44412 1.52889 2.16842 2.30838 2.34945 2.85998 3.16254 3.38246 3.71479 3.82466 3.90214 4.07987 4.18361 4.22731 4.26869 4.29895 4.40673 4.51723 4.55821 4.66529 4.68878 4.71849 4.80480 4.82278 4.89541 5.00619 5.03944 5.10537 5.12546 5.24340 5.24569 5.26520 5.44186 5.48003 5.59961 5.61890 5.63719 5.69350 5.70801 6.00780 6.15480 6.61379 6.96842 7.27386 7.76939 8.75245 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002309 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.073484 B =12125.016884 C =12505.850452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.090 4.090 4 C -0.020 4.020 5 C -0.122 4.122 6 C -0.244 4.244 7 C 0.538 3.462 8 O -0.579 6.579 9 N -0.714 5.714 10 C 0.175 3.825 11 C -0.058 4.058 12 C -0.170 4.170 13 C -0.069 4.069 14 C -0.235 4.235 15 C 0.112 3.888 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.252 1.252 25 C -0.183 4.183 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.146 0.854 37 H 0.411 0.589 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.272 0.728 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.078 -14.691 12.657 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.127 4.127 4 C -0.022 4.022 5 C -0.178 4.178 6 C -0.264 4.264 7 C 0.330 3.670 8 O -0.462 6.462 9 N -0.365 5.365 10 C 0.052 3.948 11 C -0.058 4.058 12 C -0.189 4.189 13 C -0.087 4.087 14 C -0.254 4.254 15 C 0.062 3.938 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.175 1.175 25 C -0.203 4.203 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.164 0.836 37 H 0.246 0.754 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.685 -14.143 13.383 23.799 hybrid contribution 0.448 0.600 -1.363 1.555 sum -13.237 -13.543 12.020 22.430 Atomic orbital electron populations 1.21781 0.94667 1.02204 1.02289 1.21471 0.96547 0.94950 1.02526 1.20915 0.88770 0.98651 1.04369 1.22784 0.96797 0.87947 0.94688 1.21072 0.99809 1.02538 0.94376 1.22448 0.91568 1.12025 1.00403 1.19058 0.89020 0.76017 0.82947 1.90738 1.72210 1.51681 1.31567 1.45958 1.07261 1.73665 1.09624 1.19999 0.80461 1.02227 0.92159 1.19458 0.99317 0.92427 0.94647 1.20987 1.04730 0.97117 0.96019 1.21166 0.96125 0.97440 0.93924 1.21376 1.09326 0.92692 1.02028 1.19861 0.94706 0.87283 0.91965 1.83955 1.73788 1.29074 1.27001 1.21834 1.43221 0.95622 0.88219 0.87835 1.26612 0.97200 0.93567 1.04796 1.70190 1.47374 0.98712 1.39620 0.84577 0.78433 0.78854 0.74302 1.18741 1.19822 1.17519 1.20210 1.08552 0.99056 0.92474 0.92214 0.92164 0.92429 0.91956 0.91632 0.89268 0.89867 0.91487 0.90590 0.91416 0.83608 0.75356 0.89636 0.92159 0.83496 0.83267 0.86057 0.91868 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 3 C -0.09 -1.08 5.36 29.85 0.16 -0.92 16 4 C -0.02 -0.36 5.36 -17.61 -0.09 -0.45 16 5 C -0.12 -2.40 8.47 71.24 0.60 -1.79 16 6 C -0.24 -4.92 9.60 23.43 0.22 -4.70 16 7 C 0.54 14.40 7.62 86.57 0.66 15.06 16 8 O -0.58 -18.94 13.28 -4.09 -0.05 -18.99 16 9 N -0.71 -18.26 5.54 -470.46 -2.61 -20.87 16 10 C 0.17 4.98 5.80 85.63 0.50 5.47 16 11 C -0.06 -1.88 5.25 -19.88 -0.10 -1.98 16 12 C -0.17 -4.91 9.70 22.30 0.22 -4.69 16 13 C -0.07 -2.17 10.04 22.25 0.22 -1.95 16 14 C -0.23 -9.73 9.17 22.39 0.21 -9.52 16 15 C 0.11 5.44 6.65 22.58 0.15 5.59 16 16 O -0.23 -13.76 9.76 -22.79 -0.22 -13.98 16 17 C -0.41 -23.66 9.48 67.92 0.64 -23.02 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 20 N -0.92 -56.35 13.67 21.61 0.30 -56.05 16 21 Si 1.02 42.28 29.55 68.60 2.03 44.31 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 25 C -0.18 -7.64 9.65 22.39 0.22 -7.42 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 0.91 8.03 -2.39 -0.02 0.90 16 33 H 0.07 1.48 8.02 -2.39 -0.02 1.46 16 34 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.07 1.66 6.18 -2.39 -0.01 1.64 16 36 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.41 9.24 8.45 -92.71 -0.78 8.46 16 38 H 0.09 2.25 8.09 -2.39 -0.02 2.23 16 39 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 40 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.12 5.11 5.62 -2.91 -0.02 5.09 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -72.12 371.72 4.61 -67.50 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.21 Total: 30.97 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 4.96 Total: -32.89 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.31 Total: -76.92 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.28 Total: -32.97 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -72.12 4.61 -67.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339019312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.598 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds