Wall clock time and date at job start Tue Mar 31 2020 07:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 112.90811 * 2 1 4 4 C 1.53777 * 113.61093 * 228.75017 * 2 1 3 5 5 H 1.09001 * 113.61677 * 105.47093 * 4 2 1 6 6 O 1.42895 * 113.61877 * 334.56618 * 4 2 1 7 7 C 1.53960 * 87.11233 * 220.09118 * 4 2 1 8 8 C 1.53774 * 113.61185 * 131.25570 * 2 1 3 9 9 H 1.08996 * 113.62019 * 25.34778 * 8 2 1 10 10 N 1.46503 * 113.61199 * 254.52712 * 8 2 1 11 11 C 1.34779 * 120.00009 * 156.53185 * 10 8 2 12 12 O 1.21285 * 119.99974 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.99849 * 180.02562 * 11 10 8 14 14 H 1.09004 * 109.47007 * 299.99488 * 13 11 10 15 15 C 1.50698 * 109.47230 * 59.99884 * 13 11 10 16 16 H 1.07995 * 119.99907 * 35.05539 * 15 13 11 17 17 C 1.37880 * 119.99557 * 215.05282 * 15 13 11 18 18 N 1.31508 * 120.00195 * 5.11432 * 17 15 13 19 19 Si 1.86808 * 119.99559 * 185.11172 * 17 15 13 20 20 H 1.48496 * 109.47200 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46885 * 120.00301 * 19 17 15 22 22 H 1.48504 * 109.46760 * 240.00044 * 19 17 15 23 23 C 1.50701 * 109.46914 * 179.97438 * 13 11 10 24 24 C 1.38233 * 119.99894 * 293.51277 * 23 13 11 25 25 C 1.38243 * 119.99558 * 179.78732 * 24 23 13 26 26 C 1.38236 * 119.99976 * 0.44506 * 25 24 23 27 27 C 1.38228 * 120.00110 * 359.80856 * 26 25 24 28 28 C 1.38234 * 119.99754 * 113.78822 * 23 13 11 29 29 H 1.08996 * 109.46928 * 288.74933 * 1 2 3 30 30 H 1.09001 * 109.46965 * 48.74906 * 1 2 3 31 31 H 1.08999 * 109.46878 * 168.74658 * 1 2 3 32 32 H 1.09003 * 109.47272 * 191.25387 * 3 2 1 33 33 H 1.09005 * 109.47445 * 311.25660 * 3 2 1 34 34 H 1.09002 * 109.47158 * 71.25084 * 3 2 1 35 35 H 0.96700 * 114.00626 * 180.02562 * 6 4 2 36 36 H 1.08999 * 113.60897 * 270.84719 * 7 4 2 37 37 H 1.08996 * 113.67216 * 139.89075 * 7 4 2 38 38 H 0.96999 * 119.99987 * 336.53097 * 10 8 2 39 39 H 0.97010 * 120.00016 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.00018 * 359.97438 * 24 23 13 41 41 H 1.08002 * 119.99580 * 180.27420 * 25 24 23 42 42 H 1.08006 * 119.99644 * 179.83079 * 26 25 24 43 43 H 1.08000 * 119.99996 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.00434 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 2.5650 -0.3988 -1.9146 6 8 1.2919 -2.0099 -1.4391 7 6 3.1928 -1.3160 0.0012 8 6 2.1460 -0.9291 1.0593 9 1 1.4940 -1.7528 1.3499 10 7 2.7092 -0.2165 2.2087 11 6 2.8459 -0.8475 3.3918 12 8 2.5022 -2.0051 3.5050 13 6 3.4247 -0.1142 4.5744 14 1 4.4345 0.2199 4.3360 15 6 2.5632 1.0797 4.8959 16 1 1.4928 1.0245 4.7635 17 6 3.1417 2.2424 5.3592 18 7 4.4511 2.3444 5.4252 19 14 2.0652 3.6728 5.8930 20 1 0.6361 3.3077 5.7216 21 1 2.3292 3.9851 7.3205 22 1 2.3748 4.8629 5.0604 23 6 3.4683 -1.0368 5.7652 24 6 2.2917 -1.4829 6.3374 25 6 2.3319 -2.3328 7.4270 26 6 3.5486 -2.7291 7.9500 27 6 4.7251 -2.2788 7.3810 28 6 4.6850 -1.4324 6.2887 29 1 -0.3633 0.3303 0.9731 30 1 -0.3633 0.6776 -0.7726 31 1 -0.3633 -1.0079 -0.2005 32 1 3.1955 1.3516 -0.2006 33 1 1.6428 2.0078 -0.7726 34 1 1.9628 1.8725 0.9731 35 1 1.6740 -2.5980 -2.1049 36 1 4.0725 -0.6724 0.0015 37 1 3.4432 -2.3768 0.0022 38 1 2.9837 0.7094 2.1183 39 1 4.8581 3.1626 5.7508 40 1 1.3412 -1.1700 5.9313 41 1 1.4126 -2.6849 7.8713 42 1 3.5798 -3.3909 8.8030 43 1 5.6756 -2.5887 7.7894 44 1 5.6043 -1.0807 5.8442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362689629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:26 Heat of formation + Delta-G solvation = -51.856317 kcal Electronic energy + Delta-G solvation = -25388.358758 eV Core-core repulsion = 21884.727998 eV Total energy + Delta-G solvation = -3503.630760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -40.36639 -38.77509 -37.45458 -35.31689 -33.63476 -32.38280 -31.07353 -30.23189 -29.92541 -27.42445 -27.32863 -24.52652 -23.41719 -22.46282 -21.58468 -20.76921 -19.25442 -18.45075 -17.28186 -16.74917 -16.03957 -15.84249 -15.50343 -15.09538 -14.58707 -14.24594 -14.06149 -13.79366 -13.56465 -13.31973 -12.92734 -12.62029 -12.45725 -12.35545 -12.23510 -12.14872 -11.97233 -11.68434 -11.58213 -11.45408 -11.08521 -11.00969 -10.88698 -10.66199 -10.38568 -10.26222 -10.01916 -9.95350 -9.66529 -9.41394 -8.78310 -8.54277 -8.21150 -7.93445 -7.59850 -6.28508 -4.33386 2.38543 2.41691 3.17518 3.27234 3.30814 3.72907 3.93547 4.15322 4.27987 4.54920 4.68198 4.84476 5.00841 5.07705 5.12281 5.31079 5.43891 5.71138 5.73038 5.74179 5.77541 5.80329 5.89873 5.95715 6.03838 6.07533 6.15972 6.19758 6.25072 6.41369 6.46104 6.51028 6.60253 6.66126 6.88506 6.99049 7.19107 7.32933 7.37948 7.46272 7.59921 7.63105 7.76850 7.96995 8.08945 8.46244 8.71933 9.28922 9.34606 10.80151 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.005374 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.758019 B = 5208.877945 C = 6674.075423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.135 4.135 4 C 0.087 3.913 5 H 0.068 0.932 6 O -0.547 6.547 7 C -0.185 4.185 8 C 0.143 3.857 9 H 0.111 0.889 10 N -0.719 5.719 11 C 0.528 3.472 12 O -0.568 6.568 13 C 0.047 3.953 14 H 0.092 0.908 15 C -0.512 4.512 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.880 5.880 19 Si 0.895 3.105 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.011 4.011 24 C -0.085 4.085 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.121 4.121 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.377 0.623 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.266 0.734 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -3.245 -9.967 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.193 4.193 4 C 0.027 3.973 5 H 0.086 0.914 6 O -0.352 6.352 7 C -0.225 4.225 8 C 0.037 3.963 9 H 0.128 0.872 10 N -0.371 5.371 11 C 0.318 3.682 12 O -0.447 6.447 13 C 0.026 3.974 14 H 0.109 0.891 15 C -0.550 4.550 16 H 0.081 0.919 17 C -0.130 4.130 18 N -0.516 5.516 19 Si 0.723 3.277 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.012 4.012 24 C -0.103 4.103 25 C -0.152 4.152 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.139 4.139 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.003 -3.643 -9.374 10.255 hybrid contribution 0.100 1.051 -0.004 1.055 sum -1.903 -2.593 -9.378 9.914 Atomic orbital electron populations 1.21577 0.93402 1.02409 1.01436 1.22330 0.96688 0.94783 0.94703 1.21611 1.00586 0.93909 1.03150 1.22721 0.91018 0.88561 0.94971 0.91413 1.86457 1.44330 1.41271 1.63119 1.24160 0.98379 1.02375 0.97558 1.22299 0.94603 0.95203 0.84205 0.87157 1.45963 1.65083 1.16285 1.09764 1.21648 0.76261 0.86183 0.84154 1.90574 1.51349 1.18155 1.84661 1.18155 1.00582 0.92247 0.86438 0.89065 1.20726 0.93280 0.94887 1.46081 0.91917 1.24955 0.95034 0.98524 0.94493 1.69888 1.09046 1.27770 1.44936 0.86469 0.80880 0.81722 0.78668 1.19457 1.20694 1.20785 1.20060 0.92029 0.92403 0.96699 1.20836 0.98402 0.96116 0.94928 1.20961 0.96953 0.99626 0.97692 1.20795 0.92985 1.02234 1.00698 1.20897 0.97246 0.99432 0.97427 1.20998 0.97703 0.98065 0.97117 0.92421 0.93035 0.91424 0.92054 0.92091 0.90604 0.77608 0.89201 0.90871 0.75822 0.92393 0.87094 0.87591 0.87718 0.87571 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.04 37.16 0.34 -1.41 16 2 C -0.08 -1.11 1.35 -153.70 -0.21 -1.32 16 3 C -0.14 -1.62 8.07 37.15 0.30 -1.32 16 4 C 0.09 1.00 4.70 -25.83 -0.12 0.88 16 5 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 6 O -0.55 -6.21 12.12 -35.23 -0.43 -6.63 16 7 C -0.19 -2.48 7.37 -25.82 -0.19 -2.67 16 8 C 0.14 2.33 3.60 -67.12 -0.24 2.08 16 9 H 0.11 2.09 7.46 -51.93 -0.39 1.70 16 10 N -0.72 -13.46 5.14 -53.02 -0.27 -13.73 16 11 C 0.53 11.90 7.04 -10.98 -0.08 11.82 16 12 O -0.57 -14.12 15.05 5.55 0.08 -14.04 16 13 C 0.05 1.12 2.45 -94.08 -0.23 0.89 16 14 H 0.09 2.31 6.99 -51.93 -0.36 1.94 16 15 C -0.51 -12.79 7.44 -34.44 -0.26 -13.05 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 18 N -0.88 -23.05 12.77 55.43 0.71 -22.34 16 19 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.01 -0.26 4.29 -104.62 -0.45 -0.71 16 24 C -0.08 -1.94 8.33 -39.58 -0.33 -2.27 16 25 C -0.13 -2.69 10.05 -39.58 -0.40 -3.09 16 26 C -0.15 -2.81 10.05 -39.59 -0.40 -3.21 16 27 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 28 C -0.12 -2.67 9.67 -39.58 -0.38 -3.05 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.94 6.96 -51.93 -0.36 0.58 16 32 H 0.06 0.68 7.35 -51.93 -0.38 0.30 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.01 7.07 -51.93 -0.37 0.64 16 35 H 0.38 2.56 9.12 45.56 0.42 2.97 16 36 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.41 7.26 6.50 -40.82 -0.27 7.00 16 39 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.11 2.57 7.88 -52.49 -0.41 2.16 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.11 2.37 7.96 -52.49 -0.42 1.95 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -29.78 360.82 -8.50 -38.28 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -5.86 Total: 15.73 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.14 Total: -17.60 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.44 Total: -36.07 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.34 Total: -20.67 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.78 -8.50 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362689629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.579 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds