Wall clock time and date at job start Tue Mar 31 2020 07:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 112.90811 * 2 1 4 4 C 1.53777 * 113.61093 * 228.75017 * 2 1 3 5 5 H 1.09001 * 113.61677 * 105.47093 * 4 2 1 6 6 O 1.42895 * 113.61877 * 334.56618 * 4 2 1 7 7 C 1.53960 * 87.11233 * 220.09118 * 4 2 1 8 8 C 1.53774 * 113.61185 * 131.25570 * 2 1 3 9 9 H 1.08996 * 113.62019 * 25.34778 * 8 2 1 10 10 N 1.46503 * 113.61199 * 254.52712 * 8 2 1 11 11 C 1.34779 * 120.00009 * 156.53185 * 10 8 2 12 12 O 1.21285 * 119.99974 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.99849 * 180.02562 * 11 10 8 14 14 H 1.09004 * 109.47007 * 299.99488 * 13 11 10 15 15 C 1.50698 * 109.47230 * 59.99884 * 13 11 10 16 16 H 1.07995 * 119.99907 * 35.05539 * 15 13 11 17 17 C 1.37880 * 119.99557 * 215.05282 * 15 13 11 18 18 N 1.31508 * 120.00195 * 5.11432 * 17 15 13 19 19 Si 1.86808 * 119.99559 * 185.11172 * 17 15 13 20 20 H 1.48496 * 109.47200 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46885 * 120.00301 * 19 17 15 22 22 H 1.48504 * 109.46760 * 240.00044 * 19 17 15 23 23 C 1.50701 * 109.46914 * 179.97438 * 13 11 10 24 24 C 1.38233 * 119.99894 * 293.51277 * 23 13 11 25 25 C 1.38243 * 119.99558 * 179.78732 * 24 23 13 26 26 C 1.38236 * 119.99976 * 0.44506 * 25 24 23 27 27 C 1.38228 * 120.00110 * 359.80856 * 26 25 24 28 28 C 1.38234 * 119.99754 * 113.78822 * 23 13 11 29 29 H 1.08996 * 109.46928 * 288.74933 * 1 2 3 30 30 H 1.09001 * 109.46965 * 48.74906 * 1 2 3 31 31 H 1.08999 * 109.46878 * 168.74658 * 1 2 3 32 32 H 1.09003 * 109.47272 * 191.25387 * 3 2 1 33 33 H 1.09005 * 109.47445 * 311.25660 * 3 2 1 34 34 H 1.09002 * 109.47158 * 71.25084 * 3 2 1 35 35 H 0.96700 * 114.00626 * 180.02562 * 6 4 2 36 36 H 1.08999 * 113.60897 * 270.84719 * 7 4 2 37 37 H 1.08996 * 113.67216 * 139.89075 * 7 4 2 38 38 H 0.96999 * 119.99987 * 336.53097 * 10 8 2 39 39 H 0.97010 * 120.00016 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.00018 * 359.97438 * 24 23 13 41 41 H 1.08002 * 119.99580 * 180.27420 * 25 24 23 42 42 H 1.08006 * 119.99644 * 179.83079 * 26 25 24 43 43 H 1.08000 * 119.99996 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.00434 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 2.5650 -0.3988 -1.9146 6 8 1.2919 -2.0099 -1.4391 7 6 3.1928 -1.3160 0.0012 8 6 2.1460 -0.9291 1.0593 9 1 1.4940 -1.7528 1.3499 10 7 2.7092 -0.2165 2.2087 11 6 2.8459 -0.8475 3.3918 12 8 2.5022 -2.0051 3.5050 13 6 3.4247 -0.1142 4.5744 14 1 4.4345 0.2199 4.3360 15 6 2.5632 1.0797 4.8959 16 1 1.4928 1.0245 4.7635 17 6 3.1417 2.2424 5.3592 18 7 4.4511 2.3444 5.4252 19 14 2.0652 3.6728 5.8930 20 1 0.6361 3.3077 5.7216 21 1 2.3292 3.9851 7.3205 22 1 2.3748 4.8629 5.0604 23 6 3.4683 -1.0368 5.7652 24 6 2.2917 -1.4829 6.3374 25 6 2.3319 -2.3328 7.4270 26 6 3.5486 -2.7291 7.9500 27 6 4.7251 -2.2788 7.3810 28 6 4.6850 -1.4324 6.2887 29 1 -0.3633 0.3303 0.9731 30 1 -0.3633 0.6776 -0.7726 31 1 -0.3633 -1.0079 -0.2005 32 1 3.1955 1.3516 -0.2006 33 1 1.6428 2.0078 -0.7726 34 1 1.9628 1.8725 0.9731 35 1 1.6740 -2.5980 -2.1049 36 1 4.0725 -0.6724 0.0015 37 1 3.4432 -2.3768 0.0022 38 1 2.9837 0.7094 2.1183 39 1 4.8581 3.1626 5.7508 40 1 1.3412 -1.1700 5.9313 41 1 1.4126 -2.6849 7.8713 42 1 3.5798 -3.3909 8.8030 43 1 5.6756 -2.5887 7.7894 44 1 5.6043 -1.0807 5.8442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362689629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:16 Heat of formation + Delta-G solvation = -70.877804 kcal Electronic energy + Delta-G solvation = -25389.183591 eV Core-core repulsion = 21884.727998 eV Total energy + Delta-G solvation = -3504.455593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 5.64 seconds Orbital eigenvalues (eV) -41.61536 -40.38235 -39.07936 -36.35866 -35.52723 -33.89706 -32.86336 -31.55714 -31.34465 -29.15202 -28.36224 -26.19919 -24.89835 -23.55529 -23.22903 -22.36108 -20.95317 -19.61263 -18.65995 -18.33808 -17.68649 -17.44965 -16.82426 -16.36958 -16.18752 -15.83063 -15.65832 -15.27470 -14.97238 -14.62210 -14.41268 -14.15714 -14.04476 -13.68083 -13.43144 -13.33553 -13.27783 -13.23403 -12.99679 -12.87281 -12.77923 -12.69943 -12.19282 -12.00718 -11.95041 -11.82208 -11.66791 -11.28650 -11.03539 -10.74113 -10.69791 -10.34355 -9.74026 -9.57931 -9.27959 -8.23218 -6.33491 0.73235 0.78402 1.39029 1.43374 1.53096 1.94764 2.41374 2.59467 3.05476 3.06812 3.25848 3.44589 3.66537 3.86129 4.07287 4.20223 4.25544 4.28425 4.36285 4.43827 4.51517 4.52719 4.64820 4.74549 4.77625 4.85896 4.93615 4.95486 4.97983 5.03477 5.10881 5.14340 5.15689 5.35337 5.39990 5.43249 5.50849 5.63141 5.75914 5.77136 5.83136 5.94271 6.22309 6.38968 6.71226 6.83061 6.94913 7.33144 7.58140 8.85438 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.005374 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.758019 B = 5208.877945 C = 6674.075423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.133 4.133 4 C 0.107 3.893 5 H 0.104 0.896 6 O -0.563 6.563 7 C -0.180 4.180 8 C 0.121 3.879 9 H 0.077 0.923 10 N -0.706 5.706 11 C 0.524 3.476 12 O -0.598 6.598 13 C 0.050 3.950 14 H 0.070 0.930 15 C -0.515 4.515 16 H 0.049 0.951 17 C 0.037 3.963 18 N -0.905 5.905 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.041 4.041 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.143 4.143 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.398 0.602 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.409 0.591 39 H 0.268 0.732 40 H 0.092 0.908 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -3.186 -10.509 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.191 4.191 4 C 0.048 3.952 5 H 0.121 0.879 6 O -0.371 6.371 7 C -0.219 4.219 8 C 0.016 3.984 9 H 0.095 0.905 10 N -0.357 5.357 11 C 0.313 3.687 12 O -0.480 6.480 13 C 0.029 3.971 14 H 0.088 0.912 15 C -0.552 4.552 16 H 0.067 0.933 17 C -0.165 4.165 18 N -0.542 5.542 19 Si 0.777 3.223 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.042 4.042 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.246 0.754 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.880 -3.578 -9.968 10.756 hybrid contribution 0.048 0.928 0.179 0.946 sum -1.831 -2.650 -9.789 10.305 Atomic orbital electron populations 1.21546 0.93616 1.02293 1.01112 1.22374 0.96566 0.95439 0.93852 1.21615 1.01544 0.93006 1.02895 1.22578 0.89404 0.88141 0.95127 0.87884 1.86420 1.44787 1.41789 1.64123 1.24147 0.98520 1.02275 0.96924 1.22557 0.96138 0.95512 0.84173 0.90500 1.45895 1.63957 1.16317 1.09528 1.21496 0.76304 0.85832 0.85032 1.90535 1.52938 1.19254 1.85280 1.18034 0.99130 0.92370 0.87538 0.91200 1.20730 0.92629 0.95675 1.46187 0.93284 1.25544 0.96002 1.00439 0.94466 1.69976 1.10152 1.28413 1.45699 0.85609 0.79228 0.79452 0.78057 1.19627 1.21011 1.19474 1.20166 0.93207 0.93663 0.97122 1.20849 0.97347 0.98090 0.96721 1.21331 0.99094 0.98338 0.96510 1.21282 0.91888 1.01667 1.01211 1.21315 0.99367 0.97853 0.96057 1.21157 0.96973 0.99494 0.98614 0.94297 0.90796 0.92391 0.90908 0.89644 0.92605 0.75138 0.88201 0.91433 0.75379 0.92240 0.88951 0.84683 0.83401 0.84067 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.04 71.99 0.65 -2.71 16 2 C -0.08 -2.07 1.35 -51.66 -0.07 -2.14 16 3 C -0.13 -2.97 8.07 71.98 0.58 -2.39 16 4 C 0.11 2.23 4.70 31.18 0.15 2.38 16 5 H 0.10 1.53 8.10 -2.39 -0.02 1.51 16 6 O -0.56 -11.71 12.12 -148.98 -1.81 -13.52 16 7 C -0.18 -4.67 7.37 31.18 0.23 -4.44 16 8 C 0.12 4.06 3.60 45.52 0.16 4.22 16 9 H 0.08 3.09 7.46 -2.39 -0.02 3.08 16 10 N -0.71 -27.69 5.14 -440.03 -2.26 -29.95 16 11 C 0.52 25.03 7.04 87.66 0.62 25.64 16 12 O -0.60 -31.47 15.05 -3.04 -0.05 -31.52 16 13 C 0.05 2.55 2.45 -13.03 -0.03 2.51 16 14 H 0.07 3.75 6.99 -2.38 -0.02 3.74 16 15 C -0.51 -26.80 7.44 25.60 0.19 -26.61 16 16 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 17 C 0.04 1.93 5.45 84.66 0.46 2.39 16 18 N -0.91 -48.44 12.77 21.45 0.27 -48.16 16 19 Si 0.95 41.35 29.54 68.60 2.03 43.37 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.04 -2.00 4.29 -19.87 -0.09 -2.09 16 24 C -0.11 -5.27 8.33 22.27 0.19 -5.08 16 25 C -0.13 -5.27 10.05 22.27 0.22 -5.04 16 26 C -0.14 -5.00 10.05 22.27 0.22 -4.77 16 27 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 28 C -0.14 -6.49 9.67 22.27 0.22 -6.27 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.61 6.96 -2.39 -0.02 1.60 16 32 H 0.07 1.45 7.35 -2.39 -0.02 1.43 16 33 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.05 1.47 7.07 -2.39 -0.02 1.45 16 35 H 0.40 4.42 9.12 -74.06 -0.68 3.75 16 36 H 0.10 2.41 7.66 -2.39 -0.02 2.39 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.41 15.27 6.50 -92.71 -0.60 14.66 16 39 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 40 H 0.09 4.55 7.88 -2.91 -0.02 4.53 16 41 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 42 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.11 4.77 7.96 -2.91 -0.02 4.74 16 Total: -1.00 -67.13 360.82 1.84 -65.28 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.27 Total: 43.47 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.93 Total: -28.97 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -1.99 Total: -78.12 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.85 Total: -45.04 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -67.13 1.84 -65.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362689629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.596 kcal (2) G-P(sol) polarization free energy of solvation -67.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.64 seconds