Wall clock time and date at job start Tue Mar 31 2020 07:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 112.84953 * 2 1 4 4 C 1.53788 * 113.61141 * 228.70117 * 2 1 3 5 5 H 1.09001 * 113.61719 * 105.46908 * 4 2 1 6 6 O 1.42902 * 113.61454 * 334.64710 * 4 2 1 7 7 C 1.53785 * 87.07652 * 220.01877 * 4 2 1 8 8 C 1.53775 * 87.08377 * 25.43002 * 7 4 2 9 9 H 1.09005 * 113.68918 * 89.12362 * 8 7 4 10 10 N 1.46501 * 113.61882 * 220.01961 * 8 7 4 11 11 C 1.34770 * 119.99882 * 252.50000 * 10 8 7 12 12 O 1.21280 * 120.00385 * 359.97438 * 11 10 8 13 13 C 1.50709 * 120.00087 * 179.97438 * 11 10 8 14 14 H 1.08999 * 109.46696 * 59.99904 * 13 11 10 15 15 C 1.50699 * 109.46837 * 300.00327 * 13 11 10 16 16 H 1.07999 * 120.00301 * 334.62532 * 15 13 11 17 17 C 1.37884 * 119.99693 * 154.62751 * 15 13 11 18 18 N 1.31513 * 119.99704 * 173.54201 * 17 15 13 19 19 Si 1.86802 * 119.99890 * 353.54058 * 17 15 13 20 20 H 1.48501 * 109.47009 * 84.80815 * 19 17 15 21 21 H 1.48505 * 109.47009 * 204.80293 * 19 17 15 22 22 H 1.48493 * 109.47240 * 324.80455 * 19 17 15 23 23 C 1.50697 * 109.47414 * 179.97438 * 13 11 10 24 24 C 1.38237 * 119.99711 * 66.11968 * 23 13 11 25 25 C 1.38236 * 120.00023 * 180.02562 * 24 23 13 26 26 C 1.38232 * 119.99802 * 0.07302 * 25 24 23 27 27 C 1.38228 * 120.00241 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00348 * 246.25556 * 23 13 11 29 29 H 1.09000 * 109.46853 * 288.79956 * 1 2 3 30 30 H 1.09008 * 109.47218 * 48.79915 * 1 2 3 31 31 H 1.08996 * 109.47310 * 168.79615 * 1 2 3 32 32 H 1.09006 * 109.46980 * 191.19536 * 3 2 1 33 33 H 1.09000 * 109.47772 * 311.20029 * 3 2 1 34 34 H 1.09002 * 109.46500 * 71.20041 * 3 2 1 35 35 H 0.96701 * 114.00083 * 180.02562 * 6 4 2 36 36 H 1.09002 * 113.61394 * 270.87962 * 7 4 2 37 37 H 1.08998 * 113.61448 * 139.98033 * 7 4 2 38 38 H 0.97002 * 119.99921 * 72.49128 * 10 8 7 39 39 H 0.96999 * 119.99531 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.00061 * 0.11289 * 24 23 13 41 41 H 1.07996 * 120.00114 * 180.35196 * 25 24 23 42 42 H 1.08006 * 119.99808 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00492 * 179.97438 * 27 26 25 44 44 H 1.07994 * 119.99716 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9300 -1.0587 5 1 2.5650 -0.4005 -1.9144 6 8 1.2911 -2.0102 -1.4387 7 6 3.1923 -1.3136 0.0011 8 6 2.1461 -0.9281 1.0601 9 1 1.4939 -1.7515 1.3515 10 7 2.7092 -0.2144 2.2089 11 6 2.8174 -0.8347 3.4005 12 8 2.4481 -1.9835 3.5219 13 6 3.3972 -0.1008 4.5822 14 1 2.7901 0.7786 4.7972 15 6 4.8069 0.3273 4.2652 16 1 5.3849 -0.2172 3.5332 17 6 5.3587 1.4141 4.9098 18 7 6.6270 1.7114 4.7292 19 14 4.3049 2.4640 6.0397 20 1 4.2703 1.8537 7.3930 21 1 4.8819 3.8296 6.1272 22 1 2.9250 2.5436 5.4971 23 6 3.4059 -1.0104 5.7836 24 6 4.2136 -2.1323 5.7952 25 6 4.2213 -2.9670 6.8970 26 6 3.4202 -2.6808 7.9866 27 6 2.6118 -1.5595 7.9746 28 6 2.6043 -0.7246 6.8729 29 1 -0.3633 0.3312 0.9728 30 1 -0.3634 0.6770 -0.7733 31 1 -0.3634 -1.0080 -0.1997 32 1 3.1943 1.3533 -0.1995 33 1 1.6415 2.0077 -0.7732 34 1 1.9600 1.8733 0.9729 35 1 1.6731 -2.5988 -2.1040 36 1 4.0711 -0.6687 0.0005 37 1 3.4443 -2.3741 0.0020 38 1 3.0043 0.7045 2.1119 39 1 7.0151 2.4762 5.1823 40 1 4.8396 -2.3558 4.9441 41 1 4.8565 -3.8404 6.9084 42 1 3.4259 -3.3332 8.8473 43 1 1.9856 -1.3361 8.8257 44 1 1.9720 0.1508 6.8631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362689693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:27 Heat of formation + Delta-G solvation = -47.323178 kcal Electronic energy + Delta-G solvation = -25446.737772 eV Core-core repulsion = 21943.303584 eV Total energy + Delta-G solvation = -3503.434188 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.44300 -38.97356 -37.61105 -35.35964 -33.63517 -32.51264 -31.45785 -30.29977 -30.08832 -27.78977 -27.41312 -24.52629 -23.23372 -22.48675 -21.80228 -20.93251 -19.32082 -18.48970 -17.32889 -17.08792 -16.20674 -16.08127 -15.56564 -15.14528 -14.57812 -14.37490 -14.29522 -13.73984 -13.54841 -13.41495 -13.04611 -12.77098 -12.64741 -12.41545 -12.40514 -12.25639 -12.04969 -11.97707 -11.87618 -11.59120 -11.11781 -10.98801 -10.96256 -10.74766 -10.42186 -10.27315 -10.03354 -9.91552 -9.69789 -9.53145 -8.88439 -8.70791 -8.32341 -8.08415 -7.77496 -6.30033 -4.34009 2.19623 2.26319 3.17211 3.23302 3.28215 3.57552 3.89064 4.00894 4.23723 4.50830 4.64609 4.68232 4.97670 5.01065 5.06926 5.25429 5.40399 5.58613 5.63803 5.66263 5.68882 5.70622 5.76582 5.88601 5.95129 5.97861 6.02580 6.08516 6.12939 6.29559 6.33539 6.35648 6.37987 6.51007 6.56116 6.78734 6.89578 7.17294 7.21316 7.29910 7.31459 7.58084 7.64190 7.84556 8.20240 8.32591 8.69702 9.14215 9.28686 10.80923 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.005108 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.762386 B = 5479.788885 C = 6459.438859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.087 3.913 5 H 0.069 0.931 6 O -0.548 6.548 7 C -0.184 4.184 8 C 0.142 3.858 9 H 0.113 0.887 10 N -0.719 5.719 11 C 0.537 3.463 12 O -0.560 6.560 13 C 0.021 3.979 14 H 0.067 0.933 15 C -0.513 4.513 16 H 0.082 0.918 17 C 0.087 3.913 18 N -0.883 5.883 19 Si 0.863 3.137 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.028 4.028 24 C -0.070 4.070 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.136 4.136 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.378 0.622 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.268 0.732 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 -1.933 -7.817 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C -0.192 4.192 4 C 0.028 3.972 5 H 0.087 0.913 6 O -0.353 6.353 7 C -0.223 4.223 8 C 0.036 3.964 9 H 0.130 0.870 10 N -0.370 5.370 11 C 0.326 3.674 12 O -0.438 6.438 13 C -0.001 4.001 14 H 0.085 0.915 15 C -0.550 4.550 16 H 0.100 0.900 17 C -0.117 4.117 18 N -0.518 5.518 19 Si 0.690 3.310 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.188 1.188 23 C -0.029 4.029 24 C -0.088 4.088 25 C -0.148 4.148 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.155 4.155 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.225 0.775 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.242 0.758 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.800 -2.323 -7.224 11.620 hybrid contribution 0.297 0.846 0.258 0.933 sum -8.503 -1.477 -6.966 11.091 Atomic orbital electron populations 1.21581 0.93433 1.02554 1.01224 1.22361 0.96569 0.94848 0.94909 1.21607 1.01090 0.93809 1.02720 1.22672 0.90991 0.88531 0.95051 0.91312 1.86441 1.44286 1.41327 1.63234 1.24118 0.98440 1.02676 0.97050 1.22347 0.94811 0.95143 0.84076 0.86954 1.45932 1.64457 1.17340 1.09303 1.21038 0.75464 0.86594 0.84265 1.90592 1.49912 1.18269 1.85056 1.18524 0.99175 0.94210 0.88182 0.91526 1.20522 0.94867 1.14209 1.25389 0.90008 1.24937 0.94651 0.96916 0.95246 1.69872 1.11464 1.27923 1.42544 0.87010 0.81086 0.80188 0.82720 1.18972 1.21158 1.18829 1.20081 0.93055 0.94318 0.95468 1.20840 0.97179 0.93453 0.97300 1.21030 0.99758 0.99709 0.94314 1.20853 0.98824 0.98042 0.98383 1.20866 1.00139 0.95810 0.97942 1.20963 1.00044 0.99807 0.94644 0.92697 0.92944 0.91323 0.91630 0.91992 0.91169 0.77491 0.88775 0.90800 0.75842 0.92169 0.86479 0.87150 0.87359 0.87319 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.04 37.16 0.34 -1.26 16 2 C -0.09 -1.08 1.35 -153.69 -0.21 -1.28 16 3 C -0.14 -1.52 8.05 37.16 0.30 -1.22 16 4 C 0.09 0.99 4.69 -25.91 -0.12 0.87 16 5 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 6 O -0.55 -6.06 12.13 -35.23 -0.43 -6.49 16 7 C -0.18 -2.51 7.36 -25.92 -0.19 -2.71 16 8 C 0.14 2.24 3.63 -67.12 -0.24 1.99 16 9 H 0.11 2.03 7.42 -51.93 -0.39 1.64 16 10 N -0.72 -13.00 5.12 -53.02 -0.27 -13.28 16 11 C 0.54 11.71 7.04 -10.98 -0.08 11.64 16 12 O -0.56 -13.46 15.02 5.56 0.08 -13.37 16 13 C 0.02 0.47 1.89 -94.07 -0.18 0.29 16 14 H 0.07 1.49 5.18 -51.93 -0.27 1.23 16 15 C -0.51 -13.08 8.02 -34.44 -0.28 -13.35 16 16 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 17 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 18 N -0.88 -24.87 13.96 55.43 0.77 -24.09 16 19 Si 0.86 19.97 26.66 -169.99 -4.53 15.43 16 20 H -0.26 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.26 -5.67 6.31 56.52 0.36 -5.32 16 23 C -0.03 -0.64 3.91 -104.63 -0.41 -1.05 16 24 C -0.07 -1.56 8.31 -39.58 -0.33 -1.89 16 25 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 26 C -0.14 -2.59 10.05 -39.59 -0.40 -2.98 16 27 C -0.13 -2.42 10.05 -39.59 -0.40 -2.81 16 28 C -0.14 -2.85 9.20 -39.58 -0.36 -3.22 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.07 0.89 6.96 -51.93 -0.36 0.53 16 32 H 0.06 0.73 7.35 -51.93 -0.38 0.34 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.83 7.10 -51.93 -0.37 0.46 16 35 H 0.38 2.52 9.12 45.56 0.42 2.94 16 36 H 0.09 1.30 7.66 -51.93 -0.40 0.90 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 6.93 6.54 -40.82 -0.27 6.66 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.12 2.73 7.89 -52.49 -0.41 2.31 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.07 7.96 -52.49 -0.42 1.65 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -30.95 355.90 -7.89 -38.84 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -5.83 Total: 15.30 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.05 Total: -17.71 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.50 Total: -37.37 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.34 Total: -19.86 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.53 Total: 15.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.95 -7.89 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362689693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.479 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds