Wall clock time and date at job start Tue Mar 31 2020 07:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 112.84953 * 2 1 4 4 C 1.53788 * 113.61141 * 228.70117 * 2 1 3 5 5 H 1.09001 * 113.61719 * 105.46908 * 4 2 1 6 6 O 1.42902 * 113.61454 * 334.64710 * 4 2 1 7 7 C 1.53785 * 87.07652 * 220.01877 * 4 2 1 8 8 C 1.53775 * 87.08377 * 25.43002 * 7 4 2 9 9 H 1.09005 * 113.68918 * 89.12362 * 8 7 4 10 10 N 1.46501 * 113.61882 * 220.01961 * 8 7 4 11 11 C 1.34770 * 119.99882 * 252.50000 * 10 8 7 12 12 O 1.21280 * 120.00385 * 359.97438 * 11 10 8 13 13 C 1.50709 * 120.00087 * 179.97438 * 11 10 8 14 14 H 1.08999 * 109.46696 * 59.99904 * 13 11 10 15 15 C 1.50699 * 109.46837 * 300.00327 * 13 11 10 16 16 H 1.07999 * 120.00301 * 334.62532 * 15 13 11 17 17 C 1.37884 * 119.99693 * 154.62751 * 15 13 11 18 18 N 1.31513 * 119.99704 * 173.54201 * 17 15 13 19 19 Si 1.86802 * 119.99890 * 353.54058 * 17 15 13 20 20 H 1.48501 * 109.47009 * 84.80815 * 19 17 15 21 21 H 1.48505 * 109.47009 * 204.80293 * 19 17 15 22 22 H 1.48493 * 109.47240 * 324.80455 * 19 17 15 23 23 C 1.50697 * 109.47414 * 179.97438 * 13 11 10 24 24 C 1.38237 * 119.99711 * 66.11968 * 23 13 11 25 25 C 1.38236 * 120.00023 * 180.02562 * 24 23 13 26 26 C 1.38232 * 119.99802 * 0.07302 * 25 24 23 27 27 C 1.38228 * 120.00241 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00348 * 246.25556 * 23 13 11 29 29 H 1.09000 * 109.46853 * 288.79956 * 1 2 3 30 30 H 1.09008 * 109.47218 * 48.79915 * 1 2 3 31 31 H 1.08996 * 109.47310 * 168.79615 * 1 2 3 32 32 H 1.09006 * 109.46980 * 191.19536 * 3 2 1 33 33 H 1.09000 * 109.47772 * 311.20029 * 3 2 1 34 34 H 1.09002 * 109.46500 * 71.20041 * 3 2 1 35 35 H 0.96701 * 114.00083 * 180.02562 * 6 4 2 36 36 H 1.09002 * 113.61394 * 270.87962 * 7 4 2 37 37 H 1.08998 * 113.61448 * 139.98033 * 7 4 2 38 38 H 0.97002 * 119.99921 * 72.49128 * 10 8 7 39 39 H 0.96999 * 119.99531 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.00061 * 0.11289 * 24 23 13 41 41 H 1.07996 * 120.00114 * 180.35196 * 25 24 23 42 42 H 1.08006 * 119.99808 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00492 * 179.97438 * 27 26 25 44 44 H 1.07994 * 119.99716 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9300 -1.0587 5 1 2.5650 -0.4005 -1.9144 6 8 1.2911 -2.0102 -1.4387 7 6 3.1923 -1.3136 0.0011 8 6 2.1461 -0.9281 1.0601 9 1 1.4939 -1.7515 1.3515 10 7 2.7092 -0.2144 2.2089 11 6 2.8174 -0.8347 3.4005 12 8 2.4481 -1.9835 3.5219 13 6 3.3972 -0.1008 4.5822 14 1 2.7901 0.7786 4.7972 15 6 4.8069 0.3273 4.2652 16 1 5.3849 -0.2172 3.5332 17 6 5.3587 1.4141 4.9098 18 7 6.6270 1.7114 4.7292 19 14 4.3049 2.4640 6.0397 20 1 4.2703 1.8537 7.3930 21 1 4.8819 3.8296 6.1272 22 1 2.9250 2.5436 5.4971 23 6 3.4059 -1.0104 5.7836 24 6 4.2136 -2.1323 5.7952 25 6 4.2213 -2.9670 6.8970 26 6 3.4202 -2.6808 7.9866 27 6 2.6118 -1.5595 7.9746 28 6 2.6043 -0.7246 6.8729 29 1 -0.3633 0.3312 0.9728 30 1 -0.3634 0.6770 -0.7733 31 1 -0.3634 -1.0080 -0.1997 32 1 3.1943 1.3533 -0.1995 33 1 1.6415 2.0077 -0.7732 34 1 1.9600 1.8733 0.9729 35 1 1.6731 -2.5988 -2.1040 36 1 4.0711 -0.6687 0.0005 37 1 3.4443 -2.3741 0.0020 38 1 3.0043 0.7045 2.1119 39 1 7.0151 2.4762 5.1823 40 1 4.8396 -2.3558 4.9441 41 1 4.8565 -3.8404 6.9084 42 1 3.4259 -3.3332 8.8473 43 1 1.9856 -1.3361 8.8257 44 1 1.9720 0.1508 6.8631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362689693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:27 Heat of formation + Delta-G solvation = -68.457172 kcal Electronic energy + Delta-G solvation = -25447.654211 eV Core-core repulsion = 21943.303584 eV Total energy + Delta-G solvation = -3504.350627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 4.91 seconds Orbital eigenvalues (eV) -41.68150 -40.50819 -39.17123 -36.38292 -35.52941 -33.99551 -33.27345 -31.64214 -31.37418 -29.48267 -28.35886 -26.10314 -24.80585 -23.57283 -23.36567 -22.45876 -20.96778 -19.61833 -19.08459 -18.38359 -17.85707 -17.54599 -16.85311 -16.39774 -16.13931 -15.95145 -15.76680 -15.21475 -14.98697 -14.75369 -14.53160 -14.35137 -14.17630 -13.85429 -13.63389 -13.45026 -13.34744 -13.25101 -13.06891 -12.90717 -12.74442 -12.71051 -12.05641 -12.03032 -11.96962 -11.86691 -11.63569 -11.41674 -11.05544 -10.87015 -10.75816 -10.47002 -9.80305 -9.65291 -9.38199 -8.34924 -6.42538 0.62853 0.69516 1.33005 1.38809 1.42832 1.84789 2.30588 2.48764 2.95714 3.02864 3.15523 3.42914 3.64467 3.84938 4.05133 4.08685 4.19288 4.24359 4.25723 4.32599 4.37556 4.50809 4.58297 4.60760 4.71877 4.77585 4.80027 4.89404 4.93549 4.97063 5.01116 5.13425 5.14360 5.19769 5.30654 5.37720 5.40289 5.50945 5.67728 5.71327 5.74426 5.94513 6.19520 6.29125 6.59445 6.72562 6.91791 7.22857 7.46577 8.79384 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.005108 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.762386 B = 5479.788885 C = 6459.438859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C -0.135 4.135 4 C 0.106 3.894 5 H 0.100 0.900 6 O -0.561 6.561 7 C -0.185 4.185 8 C 0.123 3.877 9 H 0.085 0.915 10 N -0.707 5.707 11 C 0.532 3.468 12 O -0.589 6.589 13 C 0.024 3.976 14 H 0.074 0.926 15 C -0.501 4.501 16 H 0.040 0.960 17 C 0.041 3.959 18 N -0.928 5.928 19 Si 0.917 3.083 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.237 1.237 23 C -0.057 4.057 24 C -0.102 4.102 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.126 4.126 28 C -0.153 4.153 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.398 0.602 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.410 0.590 39 H 0.270 0.730 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 -1.291 -7.288 12.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 C -0.192 4.192 4 C 0.047 3.953 5 H 0.118 0.882 6 O -0.369 6.369 7 C -0.224 4.224 8 C 0.018 3.982 9 H 0.103 0.897 10 N -0.358 5.358 11 C 0.320 3.680 12 O -0.470 6.470 13 C 0.003 3.997 14 H 0.092 0.908 15 C -0.538 4.538 16 H 0.058 0.942 17 C -0.160 4.160 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.161 1.161 23 C -0.058 4.058 24 C -0.120 4.120 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.172 4.172 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.168 0.832 43 H 0.166 0.834 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.728 -1.684 -6.748 12.785 hybrid contribution 0.908 0.490 0.075 1.035 sum -9.820 -1.193 -6.673 11.933 Atomic orbital electron populations 1.21550 0.92978 1.02417 1.01517 1.22366 0.96893 0.95269 0.93396 1.21636 1.01336 0.93020 1.03217 1.22538 0.89402 0.88278 0.95127 0.88221 1.86406 1.44561 1.41774 1.64166 1.24124 0.98638 1.02060 0.97588 1.22587 0.95886 0.95710 0.83981 0.89697 1.45895 1.63374 1.17453 1.09030 1.20966 0.75517 0.86288 0.85182 1.90560 1.51488 1.19317 1.85638 1.18449 0.97325 0.94757 0.89216 0.90821 1.20434 0.95870 1.13468 1.24073 0.94153 1.25625 0.95554 0.98082 0.96733 1.69996 1.13326 1.28900 1.44387 0.86144 0.80847 0.78349 0.80583 1.19127 1.20844 1.16054 1.20127 0.94672 0.94915 0.96072 1.20819 0.98182 0.95067 0.97966 1.21357 1.00240 0.99813 0.93828 1.21345 0.97124 0.98178 0.98779 1.21362 0.99866 0.94982 0.98142 1.21244 1.00112 1.01016 0.94782 0.93533 0.90731 0.92426 0.91588 0.89406 0.91982 0.75170 0.88921 0.91807 0.75274 0.92102 0.89387 0.84822 0.83159 0.83381 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.04 71.98 0.65 -2.28 16 2 C -0.08 -1.87 1.35 -51.65 -0.07 -1.94 16 3 C -0.13 -2.79 8.05 71.98 0.58 -2.21 16 4 C 0.11 2.24 4.69 31.12 0.15 2.38 16 5 H 0.10 1.58 8.10 -2.39 -0.02 1.56 16 6 O -0.56 -11.52 12.13 -148.98 -1.81 -13.33 16 7 C -0.18 -5.12 7.36 31.12 0.23 -4.89 16 8 C 0.12 3.99 3.63 45.51 0.17 4.15 16 9 H 0.08 3.23 7.42 -2.38 -0.02 3.21 16 10 N -0.71 -26.52 5.12 -440.05 -2.25 -28.78 16 11 C 0.53 24.21 7.04 87.66 0.62 24.83 16 12 O -0.59 -29.74 15.02 -3.03 -0.05 -29.78 16 13 C 0.02 1.12 1.89 -13.03 -0.02 1.10 16 14 H 0.07 3.29 5.18 -2.39 -0.01 3.28 16 15 C -0.50 -26.71 8.02 25.60 0.21 -26.51 16 16 H 0.04 2.43 8.05 -2.91 -0.02 2.40 16 17 C 0.04 2.20 5.47 84.66 0.46 2.66 16 18 N -0.93 -54.06 13.96 21.45 0.30 -53.76 16 19 Si 0.92 40.86 26.66 68.60 1.83 42.69 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.24 -9.45 6.31 99.48 0.63 -8.82 16 23 C -0.06 -2.63 3.91 -19.87 -0.08 -2.71 16 24 C -0.10 -4.73 8.31 22.27 0.19 -4.55 16 25 C -0.13 -5.13 10.05 22.27 0.22 -4.91 16 26 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 27 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 28 C -0.15 -6.18 9.20 22.27 0.20 -5.98 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.45 6.96 -2.39 -0.02 1.43 16 32 H 0.07 1.36 7.35 -2.38 -0.02 1.34 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.38 7.10 -2.39 -0.02 1.37 16 35 H 0.40 4.53 9.12 -74.06 -0.68 3.86 16 36 H 0.09 2.59 7.66 -2.39 -0.02 2.57 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.41 14.39 6.54 -92.71 -0.61 13.79 16 39 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.09 4.44 7.89 -2.91 -0.02 4.42 16 41 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 44 H 0.12 4.39 7.96 -2.91 -0.02 4.37 16 Total: -1.00 -70.41 355.90 1.62 -68.79 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.35 Total: 43.33 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 3.95 Total: -29.17 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -1.96 Total: -82.54 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.85 Total: -43.11 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.83 Total: 42.69 kcal Total: -70.41 1.62 -68.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362689693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.333 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.91 seconds