Wall clock time and date at job start Tue Mar 31 2020 09:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47503 * 2 1 4 4 O 1.42899 * 110.64008 * 66.68306 * 3 2 1 5 5 C 1.55159 * 110.71997 * 303.54504 * 3 2 1 6 6 C 1.54906 * 101.58326 * 206.13514 * 5 3 2 7 7 N 1.47423 * 104.83562 * 37.00457 * 6 5 3 8 8 C 1.34772 * 125.64860 * 155.90253 * 7 6 5 9 9 O 1.21286 * 119.99887 * 179.97438 * 8 7 6 10 10 C 1.50698 * 120.00164 * 359.97438 * 8 7 6 11 11 H 1.08998 * 109.47023 * 59.99263 * 10 8 7 12 12 C 1.50700 * 109.46861 * 299.99805 * 10 8 7 13 13 H 1.07999 * 120.00102 * 325.63184 * 12 10 8 14 14 C 1.37872 * 120.00239 * 145.64642 * 12 10 8 15 15 N 1.31520 * 120.00167 * 5.21373 * 14 12 10 16 16 Si 1.86806 * 120.00321 * 185.21709 * 14 12 10 17 17 H 1.48495 * 109.46991 * 89.99351 * 16 14 12 18 18 H 1.48501 * 109.47004 * 209.99949 * 16 14 12 19 19 H 1.48500 * 109.46572 * 329.99833 * 16 14 12 20 20 C 1.50697 * 109.47358 * 179.97438 * 10 8 7 21 21 C 1.38243 * 119.99825 * 66.16676 * 20 10 8 22 22 C 1.38227 * 119.99891 * 179.74627 * 21 20 10 23 23 C 1.38239 * 120.00117 * 0.54733 * 22 21 20 24 24 C 1.38232 * 119.99795 * 359.70500 * 23 22 21 25 25 C 1.38229 * 120.00547 * 246.44076 * 20 10 8 26 26 C 1.47028 * 108.70016 * 335.87881 * 7 6 5 27 27 H 1.09000 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47562 * 300.00270 * 1 2 3 29 29 H 1.09001 * 109.46870 * 60.00077 * 1 2 3 30 30 H 1.09001 * 109.46870 * 119.99923 * 2 1 3 31 31 H 1.08999 * 109.47562 * 239.99730 * 2 1 3 32 32 H 0.96697 * 114.00398 * 300.70251 * 4 3 2 33 33 H 1.09000 * 111.00131 * 324.21178 * 5 3 2 34 34 H 1.09001 * 111.00264 * 88.01437 * 5 3 2 35 35 H 1.09001 * 110.36725 * 155.84851 * 6 5 3 36 36 H 1.09001 * 110.36191 * 278.16542 * 6 5 3 37 37 H 0.96994 * 120.00322 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.99848 * 0.02562 * 21 20 10 39 39 H 1.08008 * 120.00028 * 180.27667 * 22 21 20 40 40 H 1.08002 * 119.99823 * 179.72629 * 23 22 21 41 41 H 1.07999 * 120.00083 * 179.97438 * 24 23 22 42 42 H 1.08008 * 119.99597 * 0.02562 * 25 20 10 43 43 H 1.09000 * 109.87440 * 241.63683 * 26 7 6 44 44 H 1.08998 * 109.88065 * 120.47655 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.7089 2.0938 1.2281 5 6 1.4670 2.2274 -1.2095 6 6 2.5533 3.3115 -1.4197 7 7 3.8283 2.6288 -1.1338 8 6 5.0375 2.9943 -1.6034 9 8 6.0236 2.3561 -1.3012 10 6 5.1644 4.1959 -2.5038 11 1 4.8065 5.0821 -1.9798 12 6 4.3408 3.9809 -3.7474 13 1 4.2438 2.9902 -4.1663 14 6 3.7114 5.0490 -4.3507 15 7 3.9119 6.2692 -3.9025 16 14 2.5737 4.7633 -5.8045 17 1 1.1894 4.5438 -5.3141 18 1 2.6010 5.9511 -6.6953 19 1 3.0267 3.5676 -6.5598 20 6 6.6098 4.3877 -2.8849 21 6 7.2476 3.4473 -3.6722 22 6 8.5718 3.6258 -4.0261 23 6 9.2616 4.7390 -3.5834 24 6 8.6253 5.6767 -2.7918 25 6 7.2994 5.5010 -2.4426 26 6 3.5621 1.4834 -0.2512 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 0.7602 2.1287 1.4115 33 1 1.3808 1.5855 -2.0863 34 1 0.5061 2.6788 -0.9625 35 1 2.5374 3.6701 -2.4489 36 1 2.4024 4.1390 -0.7264 37 1 3.4688 7.0205 -4.3267 38 1 6.7100 2.5755 -4.0145 39 1 9.0689 2.8934 -4.6450 40 1 10.2975 4.8762 -3.8563 41 1 9.1642 6.5462 -2.4456 42 1 6.8024 6.2333 -1.8234 43 1 4.0904 1.6128 0.6934 44 1 3.8831 0.5606 -0.7344 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363014246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:22 Heat of formation + Delta-G solvation = -67.908262 kcal Electronic energy + Delta-G solvation = -25620.586075 eV Core-core repulsion = 22116.259251 eV Total energy + Delta-G solvation = -3504.326824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.84798 -38.57323 -37.36661 -34.94005 -33.68822 -32.86288 -31.07990 -29.89983 -29.62453 -28.70465 -27.02445 -24.24186 -23.21097 -22.48901 -21.54898 -20.60506 -20.00144 -18.48989 -16.84652 -16.69070 -16.07959 -15.83664 -15.51755 -14.82078 -14.69874 -14.31422 -14.02551 -13.96596 -13.83608 -13.34648 -12.73781 -12.61909 -12.56896 -12.37908 -12.19345 -11.99891 -11.84765 -11.65383 -11.52368 -11.44322 -11.19196 -11.06661 -10.97860 -10.89412 -10.44395 -10.39980 -10.24441 -10.01073 -9.70472 -9.42239 -8.77399 -8.59068 -7.91122 -7.84874 -7.57139 -6.29165 -4.33393 2.41830 2.44237 3.14231 3.24087 3.26437 3.71248 3.81017 4.18638 4.25169 4.57299 4.76969 4.81848 4.87145 5.06463 5.10622 5.29584 5.39914 5.64115 5.69168 5.75566 5.79141 5.82196 5.89784 5.92524 5.97685 5.99165 6.09337 6.16252 6.24078 6.30443 6.50883 6.53756 6.63169 6.64874 6.89535 6.99849 7.14631 7.21058 7.40705 7.48770 7.60980 7.67292 7.77141 7.98884 8.08770 8.39337 8.67745 9.23308 9.28494 10.78795 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.005423 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.242491 B = 5161.632730 C = 6476.366456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.118 3.882 4 O -0.549 6.549 5 C -0.158 4.158 6 C 0.100 3.900 7 N -0.611 5.611 8 C 0.542 3.458 9 O -0.568 6.568 10 C 0.056 3.944 11 H 0.088 0.912 12 C -0.509 4.509 13 H 0.063 0.937 14 C 0.074 3.926 15 N -0.874 5.874 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.008 4.008 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.117 4.117 26 C 0.122 3.878 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.372 0.628 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.267 0.733 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 -6.587 4.980 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C 0.077 3.923 4 O -0.355 6.355 5 C -0.196 4.196 6 C -0.022 4.022 7 N -0.345 5.345 8 C 0.334 3.666 9 O -0.447 6.447 10 C 0.035 3.965 11 H 0.106 0.894 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.132 4.132 15 N -0.509 5.509 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.009 4.009 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.167 4.167 24 C -0.150 4.150 25 C -0.135 4.135 26 C -0.001 4.001 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.220 0.780 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.869 -6.620 5.108 9.676 hybrid contribution -1.310 -0.064 -0.889 1.584 sum -6.179 -6.684 4.219 10.033 Atomic orbital electron populations 1.21802 0.95416 1.02027 1.01984 1.22083 0.96484 0.96232 1.03231 1.22184 0.94849 0.90941 0.84337 1.86586 1.28842 1.80509 1.39543 1.23490 0.98963 0.98787 0.98346 1.22508 0.81125 0.93835 1.04756 1.48279 1.07740 1.29366 1.49153 1.21439 0.79975 0.86555 0.78650 1.90588 1.36730 1.56830 1.60532 1.18079 0.90598 0.92819 0.95035 0.89446 1.20628 1.29803 0.94765 1.09483 0.91914 1.24966 0.96248 0.94960 0.96977 1.69924 1.41592 0.98371 1.41004 0.86570 0.80907 0.78229 0.82383 1.20171 1.20956 1.19571 1.19995 0.95082 0.92563 0.93307 1.20811 0.93623 0.98738 0.97123 1.20943 0.95206 0.97861 1.01284 1.20791 0.98919 0.95969 1.01037 1.20892 0.95235 0.98883 1.00001 1.20976 0.93801 0.98109 1.00621 1.21679 0.92417 0.90976 0.95049 0.92430 0.92785 0.92055 0.91053 0.90593 0.78028 0.89968 0.90203 0.86574 0.92412 0.92284 0.87186 0.87630 0.87740 0.87578 0.87062 0.91429 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.47 37.15 0.35 -0.91 16 2 C -0.14 -1.47 5.20 -26.73 -0.14 -1.61 16 3 C 0.12 1.55 0.96 -88.79 -0.08 1.47 16 4 O -0.55 -7.15 13.10 -35.23 -0.46 -7.61 16 5 C -0.16 -2.14 4.94 -24.58 -0.12 -2.26 16 6 C 0.10 1.81 6.58 -2.53 -0.02 1.79 16 7 N -0.61 -12.30 3.32 -170.52 -0.57 -12.87 16 8 C 0.54 12.75 7.10 -10.99 -0.08 12.68 16 9 O -0.57 -14.58 15.75 5.55 0.09 -14.50 16 10 C 0.06 1.35 1.91 -94.08 -0.18 1.17 16 11 H 0.09 2.26 7.15 -51.93 -0.37 1.89 16 12 C -0.51 -12.55 5.26 -34.44 -0.18 -12.73 16 13 H 0.06 1.58 7.82 -52.49 -0.41 1.16 16 14 C 0.07 1.82 5.10 -17.82 -0.09 1.73 16 15 N -0.87 -22.66 12.85 55.43 0.71 -21.95 16 16 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.01 -0.20 4.30 -104.62 -0.45 -0.65 16 21 C -0.08 -1.96 8.31 -39.58 -0.33 -2.28 16 22 C -0.13 -2.73 10.05 -39.59 -0.40 -3.13 16 23 C -0.15 -2.85 10.05 -39.58 -0.40 -3.25 16 24 C -0.13 -2.63 10.05 -39.59 -0.40 -3.03 16 25 C -0.12 -2.63 9.67 -39.59 -0.38 -3.02 16 26 C 0.12 2.09 6.23 -3.06 -0.02 2.07 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.38 7.01 -51.93 -0.36 0.02 16 29 H 0.06 0.50 7.15 -51.93 -0.37 0.13 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 32 H 0.37 3.27 7.74 45.56 0.35 3.62 16 33 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.12 2.36 5.32 -51.93 -0.28 2.08 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.11 2.56 7.89 -52.49 -0.41 2.15 16 39 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.11 2.43 7.96 -52.48 -0.42 2.01 16 43 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -29.69 355.91 -8.82 -38.50 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.02 Total: 10.72 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.91 Total: -11.96 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.15 Total: -34.82 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.37 Total: -22.10 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.69 -8.82 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363014246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.406 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds