Wall clock time and date at job start Tue Mar 31 2020 09:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47503 * 2 1 4 4 O 1.42899 * 110.64008 * 66.68306 * 3 2 1 5 5 C 1.55159 * 110.71997 * 303.54504 * 3 2 1 6 6 C 1.54906 * 101.58326 * 206.13514 * 5 3 2 7 7 N 1.47423 * 104.83562 * 37.00457 * 6 5 3 8 8 C 1.34772 * 125.64860 * 155.90253 * 7 6 5 9 9 O 1.21286 * 119.99887 * 179.97438 * 8 7 6 10 10 C 1.50698 * 120.00164 * 359.97438 * 8 7 6 11 11 H 1.08998 * 109.47023 * 59.99263 * 10 8 7 12 12 C 1.50700 * 109.46861 * 299.99805 * 10 8 7 13 13 H 1.07999 * 120.00102 * 325.63184 * 12 10 8 14 14 C 1.37872 * 120.00239 * 145.64642 * 12 10 8 15 15 N 1.31520 * 120.00167 * 5.21373 * 14 12 10 16 16 Si 1.86806 * 120.00321 * 185.21709 * 14 12 10 17 17 H 1.48495 * 109.46991 * 89.99351 * 16 14 12 18 18 H 1.48501 * 109.47004 * 209.99949 * 16 14 12 19 19 H 1.48500 * 109.46572 * 329.99833 * 16 14 12 20 20 C 1.50697 * 109.47358 * 179.97438 * 10 8 7 21 21 C 1.38243 * 119.99825 * 66.16676 * 20 10 8 22 22 C 1.38227 * 119.99891 * 179.74627 * 21 20 10 23 23 C 1.38239 * 120.00117 * 0.54733 * 22 21 20 24 24 C 1.38232 * 119.99795 * 359.70500 * 23 22 21 25 25 C 1.38229 * 120.00547 * 246.44076 * 20 10 8 26 26 C 1.47028 * 108.70016 * 335.87881 * 7 6 5 27 27 H 1.09000 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47562 * 300.00270 * 1 2 3 29 29 H 1.09001 * 109.46870 * 60.00077 * 1 2 3 30 30 H 1.09001 * 109.46870 * 119.99923 * 2 1 3 31 31 H 1.08999 * 109.47562 * 239.99730 * 2 1 3 32 32 H 0.96697 * 114.00398 * 300.70251 * 4 3 2 33 33 H 1.09000 * 111.00131 * 324.21178 * 5 3 2 34 34 H 1.09001 * 111.00264 * 88.01437 * 5 3 2 35 35 H 1.09001 * 110.36725 * 155.84851 * 6 5 3 36 36 H 1.09001 * 110.36191 * 278.16542 * 6 5 3 37 37 H 0.96994 * 120.00322 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.99848 * 0.02562 * 21 20 10 39 39 H 1.08008 * 120.00028 * 180.27667 * 22 21 20 40 40 H 1.08002 * 119.99823 * 179.72629 * 23 22 21 41 41 H 1.07999 * 120.00083 * 179.97438 * 24 23 22 42 42 H 1.08008 * 119.99597 * 0.02562 * 25 20 10 43 43 H 1.09000 * 109.87440 * 241.63683 * 26 7 6 44 44 H 1.08998 * 109.88065 * 120.47655 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.7089 2.0938 1.2281 5 6 1.4670 2.2274 -1.2095 6 6 2.5533 3.3115 -1.4197 7 7 3.8283 2.6288 -1.1338 8 6 5.0375 2.9943 -1.6034 9 8 6.0236 2.3561 -1.3012 10 6 5.1644 4.1959 -2.5038 11 1 4.8065 5.0821 -1.9798 12 6 4.3408 3.9809 -3.7474 13 1 4.2438 2.9902 -4.1663 14 6 3.7114 5.0490 -4.3507 15 7 3.9119 6.2692 -3.9025 16 14 2.5737 4.7633 -5.8045 17 1 1.1894 4.5438 -5.3141 18 1 2.6010 5.9511 -6.6953 19 1 3.0267 3.5676 -6.5598 20 6 6.6098 4.3877 -2.8849 21 6 7.2476 3.4473 -3.6722 22 6 8.5718 3.6258 -4.0261 23 6 9.2616 4.7390 -3.5834 24 6 8.6253 5.6767 -2.7918 25 6 7.2994 5.5010 -2.4426 26 6 3.5621 1.4834 -0.2512 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 0.7602 2.1287 1.4115 33 1 1.3808 1.5855 -2.0863 34 1 0.5061 2.6788 -0.9625 35 1 2.5374 3.6701 -2.4489 36 1 2.4024 4.1390 -0.7264 37 1 3.4688 7.0205 -4.3267 38 1 6.7100 2.5755 -4.0145 39 1 9.0689 2.8934 -4.6450 40 1 10.2975 4.8762 -3.8563 41 1 9.1642 6.5462 -2.4456 42 1 6.8024 6.2333 -1.8234 43 1 4.0904 1.6128 0.6934 44 1 3.8831 0.5606 -0.7344 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363014246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:21 Heat of formation + Delta-G solvation = -86.295800 kcal Electronic energy + Delta-G solvation = -25621.383419 eV Core-core repulsion = 22116.259251 eV Total energy + Delta-G solvation = -3505.124168 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33973 -40.08980 -38.96928 -36.38447 -35.52319 -33.79440 -32.89185 -31.55715 -30.95693 -30.11047 -28.62776 -25.99594 -24.40324 -23.84569 -23.21756 -22.17747 -21.12891 -20.16670 -18.70673 -18.01329 -17.67051 -17.32792 -16.90139 -16.52846 -16.08545 -15.82644 -15.60788 -15.45262 -14.96172 -14.83521 -14.29782 -14.05852 -13.97228 -13.77223 -13.58676 -13.38554 -13.33635 -13.26790 -12.87173 -12.76703 -12.70947 -12.56687 -12.25349 -12.16932 -11.96495 -11.85935 -11.69036 -11.51848 -11.29514 -10.82341 -10.63521 -10.45790 -9.58236 -9.51233 -9.27684 -8.20479 -6.30323 0.73844 0.78421 1.41755 1.44872 1.53612 1.87359 2.23827 2.41938 3.06758 3.12583 3.23776 3.50613 3.67006 3.79688 4.18313 4.25845 4.28306 4.28465 4.34708 4.41388 4.47239 4.52554 4.60017 4.67716 4.71232 4.85124 4.90076 4.95253 4.96849 5.04869 5.10496 5.14463 5.18059 5.28999 5.34477 5.42557 5.44750 5.58227 5.65183 5.76475 5.81421 5.92827 6.21744 6.38645 6.65225 6.71337 6.88127 7.32703 7.41899 8.87759 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.005423 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.242491 B = 5161.632730 C = 6476.366456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.133 3.867 4 O -0.564 6.564 5 C -0.145 4.145 6 C 0.094 3.906 7 N -0.612 5.612 8 C 0.534 3.466 9 O -0.598 6.598 10 C 0.062 3.938 11 H 0.060 0.940 12 C -0.507 4.507 13 H 0.051 0.949 14 C 0.037 3.963 15 N -0.903 5.903 16 Si 0.949 3.051 17 H -0.257 1.257 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.038 4.038 21 C -0.111 4.111 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.143 4.143 26 C 0.112 3.888 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.393 0.607 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.268 0.732 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -7.404 4.638 11.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.092 3.908 4 O -0.373 6.373 5 C -0.183 4.183 6 C -0.028 4.028 7 N -0.344 5.344 8 C 0.325 3.675 9 O -0.480 6.480 10 C 0.040 3.960 11 H 0.078 0.922 12 C -0.545 4.545 13 H 0.070 0.930 14 C -0.165 4.165 15 N -0.540 5.540 16 Si 0.774 3.226 17 H -0.181 1.181 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.039 4.039 21 C -0.129 4.129 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.147 4.147 25 C -0.161 4.161 26 C -0.011 4.011 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.244 0.756 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.122 0.878 43 H 0.069 0.931 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.778 -7.450 4.787 10.574 hybrid contribution -0.965 0.210 -0.711 1.217 sum -6.743 -7.240 4.076 10.701 Atomic orbital electron populations 1.21801 0.93167 1.03122 1.02825 1.22030 0.98302 0.93649 1.03379 1.21996 0.91643 0.92875 0.84304 1.86542 1.31026 1.80647 1.39126 1.23489 0.98551 0.97317 0.98918 1.22564 0.81808 0.95375 1.03033 1.48337 1.07475 1.30021 1.48571 1.21360 0.80792 0.86452 0.78869 1.90538 1.37970 1.57732 1.61787 1.17926 0.91279 0.91929 0.94825 0.92196 1.20578 1.30050 0.94268 1.09606 0.93041 1.25574 0.97307 0.94508 0.99125 1.70034 1.42632 0.99031 1.42274 0.85689 0.80059 0.77583 0.79313 1.18149 1.21280 1.19832 1.20121 0.95266 0.93845 0.94706 1.20835 0.95268 0.98427 0.98355 1.21332 0.94030 0.98973 1.00884 1.21283 1.00741 0.94610 0.99414 1.21301 0.94093 1.00116 0.99172 1.21117 0.95462 0.97903 1.01645 1.21936 0.95806 0.89743 0.93582 0.91295 0.91340 0.91818 0.90718 0.90767 0.75557 0.89206 0.86978 0.88977 0.93100 0.92293 0.88782 0.84503 0.83342 0.84182 0.87821 0.93084 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.47 71.98 0.68 -1.25 16 2 C -0.14 -2.48 5.20 30.59 0.16 -2.32 16 3 C 0.13 3.31 0.96 -9.61 -0.01 3.30 16 4 O -0.56 -13.65 13.10 -148.98 -1.95 -15.60 16 5 C -0.14 -3.68 4.94 31.99 0.16 -3.52 16 6 C 0.09 3.48 6.58 86.85 0.57 4.05 16 7 N -0.61 -25.71 3.32 -811.80 -2.70 -28.40 16 8 C 0.53 26.64 7.10 87.66 0.62 27.26 16 9 O -0.60 -32.45 15.75 -3.05 -0.05 -32.50 16 10 C 0.06 3.17 1.91 -13.03 -0.02 3.15 16 11 H 0.06 3.35 7.15 -2.39 -0.02 3.33 16 12 C -0.51 -26.15 5.26 25.60 0.13 -26.02 16 13 H 0.05 2.71 7.82 -2.91 -0.02 2.68 16 14 C 0.04 1.88 5.10 84.65 0.43 2.32 16 15 N -0.90 -48.45 12.85 21.45 0.28 -48.18 16 16 Si 0.95 39.95 29.54 68.60 2.03 41.97 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 C -0.04 -1.94 4.30 -19.87 -0.09 -2.02 16 21 C -0.11 -5.25 8.31 22.27 0.19 -5.07 16 22 C -0.13 -5.29 10.05 22.27 0.22 -5.07 16 23 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 24 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 25 C -0.14 -6.65 9.67 22.27 0.22 -6.43 16 26 C 0.11 3.90 6.23 86.73 0.54 4.44 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.68 7.01 -2.39 -0.02 0.67 16 29 H 0.06 0.80 7.15 -2.39 -0.02 0.78 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.40 7.97 -2.39 -0.02 1.38 16 32 H 0.39 5.70 7.74 -74.06 -0.57 5.12 16 33 H 0.09 2.19 8.05 -2.39 -0.02 2.17 16 34 H 0.11 2.16 8.11 -2.39 -0.02 2.14 16 35 H 0.09 3.87 5.32 -2.39 -0.01 3.86 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 38 H 0.09 4.62 7.89 -2.91 -0.02 4.60 16 39 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.10 4.80 7.96 -2.91 -0.02 4.78 16 43 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 44 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 Total: -1.00 -67.88 355.91 2.28 -65.60 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.42 Total: 33.91 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.25 Total: -16.79 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.42 Total: -76.58 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.00 Total: -48.10 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Total: -67.88 2.28 -65.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363014246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.700 kcal (2) G-P(sol) polarization free energy of solvation -67.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds