Wall clock time and date at job start Tue Mar 31 2020 07:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 110.45616 * 2 1 4 4 N 1.46496 * 109.46976 * 59.30042 * 3 2 1 5 5 C 1.34777 * 120.00098 * 180.27663 * 4 3 2 6 6 O 1.21277 * 119.99924 * 359.72524 * 5 4 3 7 7 C 1.50700 * 119.99908 * 179.72265 * 5 4 3 8 8 H 1.08991 * 109.47164 * 299.99713 * 7 5 4 9 9 C 1.50698 * 109.47232 * 60.00087 * 7 5 4 10 10 H 1.07997 * 120.00068 * 235.33916 * 9 7 5 11 11 C 1.37877 * 120.00142 * 55.34131 * 9 7 5 12 12 N 1.31515 * 119.99905 * 1.97897 * 11 9 7 13 13 Si 1.86799 * 120.00178 * 181.97996 * 11 9 7 14 14 H 1.48496 * 109.47189 * 59.99982 * 13 11 9 15 15 H 1.48505 * 109.47152 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46869 * 300.00032 * 13 11 9 17 17 C 1.50704 * 109.46852 * 179.97438 * 7 5 4 18 18 C 1.38234 * 120.00005 * 226.94684 * 17 7 5 19 19 C 1.38240 * 119.99722 * 179.80936 * 18 17 7 20 20 C 1.38236 * 120.00249 * 0.42292 * 19 18 17 21 21 C 1.38237 * 119.99669 * 359.80762 * 20 19 18 22 22 C 1.38235 * 119.99965 * 47.21914 * 17 7 5 23 23 C 1.54510 * 110.51141 * 237.39828 * 2 1 3 24 24 C 1.54483 * 104.06138 * 241.21615 * 23 2 1 25 25 O 1.44429 * 104.80107 * 23.97786 * 24 23 2 26 26 C 1.44646 * 105.36805 * 319.56417 * 25 24 23 27 27 H 1.09000 * 109.46904 * 60.70018 * 1 2 3 28 28 H 1.08999 * 109.47018 * 180.69928 * 1 2 3 29 29 H 1.09000 * 109.47437 * 300.70169 * 1 2 3 30 30 H 1.08997 * 109.46881 * 299.30216 * 3 2 1 31 31 H 1.09001 * 109.47240 * 179.29889 * 3 2 1 32 32 H 0.97004 * 120.00326 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99977 * 179.97438 * 12 11 9 34 34 H 1.08000 * 120.00256 * 359.97438 * 18 17 7 35 35 H 1.08004 * 119.99643 * 180.20717 * 19 18 17 36 36 H 1.07992 * 120.00213 * 179.78933 * 20 19 18 37 37 H 1.07999 * 119.99996 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00399 * 359.97438 * 22 17 7 39 39 H 1.08997 * 110.51207 * 359.86037 * 23 2 1 40 40 H 1.09000 * 110.51200 * 122.43700 * 23 2 1 41 41 H 1.08990 * 110.37161 * 142.81185 * 24 23 2 42 42 H 1.09002 * 110.37415 * 265.04019 * 24 23 2 43 43 H 1.08996 * 110.34128 * 281.58842 * 26 25 24 44 44 H 1.08998 * 110.50233 * 159.18497 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 7 1.5747 2.1375 1.1876 5 6 1.9154 3.4247 1.3966 6 8 2.6318 3.9986 0.6040 7 6 1.4062 4.1506 2.6151 8 1 0.3165 4.1659 2.5999 9 6 1.8815 3.4420 3.8572 10 1 1.1677 3.1130 4.5978 11 6 3.2278 3.2138 4.0482 12 7 4.1002 3.6488 3.1655 13 14 3.8126 2.2867 5.5608 14 1 3.2134 0.9280 5.5710 15 1 5.2931 2.1751 5.5314 16 1 3.3961 3.0205 6.7829 17 6 1.9290 5.5641 2.6126 18 6 2.4799 6.0993 3.7619 19 6 2.9630 7.3945 3.7584 20 6 2.8872 8.1575 2.6082 21 6 2.3318 7.6239 1.4603 22 6 1.8523 6.3274 1.4626 23 6 2.0714 -0.7797 -1.2191 24 6 2.8787 -1.9393 -0.5946 25 8 2.3119 -2.1165 0.7219 26 6 2.0713 -0.7796 1.2188 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3634 0.5247 0.8836 30 1 1.7205 1.9497 -0.8962 31 1 3.1545 1.4149 0.0126 32 1 1.0014 1.6786 1.8214 33 1 5.0474 3.4885 3.3001 34 1 2.5355 5.5046 4.6617 35 1 3.3966 7.8115 4.6555 36 1 3.2614 9.1705 2.6065 37 1 2.2721 8.2201 0.5617 38 1 1.4182 5.9106 0.5657 39 1 1.2491 -1.1673 -1.8205 40 1 2.7181 -0.1432 -1.8231 41 1 2.7575 -2.8473 -1.1853 42 1 3.9330 -1.6722 -0.5228 43 1 3.0010 -0.3337 1.5721 44 1 1.3302 -0.7968 2.0178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411286280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:07 Heat of formation + Delta-G solvation = -64.797106 kcal Electronic energy + Delta-G solvation = -25699.074944 eV Core-core repulsion = 22194.883029 eV Total energy + Delta-G solvation = -3504.191914 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -39.90176 -38.79218 -37.35989 -34.96900 -33.59950 -32.07891 -30.80666 -29.67835 -29.63628 -27.58004 -26.53848 -25.23945 -23.72709 -22.59538 -21.25528 -20.50947 -19.33739 -19.08240 -16.89651 -16.31688 -16.01872 -15.44110 -15.25150 -15.04779 -14.77708 -14.60131 -14.21294 -13.75192 -13.63226 -13.57854 -12.93024 -12.84437 -12.42619 -12.34442 -12.16765 -12.06535 -11.96630 -11.43592 -11.37019 -11.28081 -10.96959 -10.87531 -10.80103 -10.62184 -10.52414 -10.42537 -10.03992 -9.66278 -9.63442 -9.37604 -8.71146 -8.30160 -7.98705 -7.67467 -7.38212 -6.13590 -4.30252 2.56398 2.62915 3.20214 3.28099 3.29313 4.00355 4.10909 4.23600 4.37916 4.62867 4.75801 4.89494 5.04626 5.13912 5.14836 5.23824 5.30353 5.61134 5.69409 5.78711 5.85798 5.86948 5.90771 5.94275 5.99218 6.04369 6.07000 6.16956 6.20726 6.34078 6.42169 6.59752 6.69186 6.82250 6.84117 6.91685 7.14899 7.23092 7.51578 7.57527 7.66077 7.68608 7.80665 8.17858 8.28752 8.60689 8.80764 9.36395 9.70484 10.86523 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.005117 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.544869 B = 5470.127550 C = 6643.582569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C 0.143 3.857 4 N -0.736 5.736 5 C 0.551 3.449 6 O -0.548 6.548 7 C 0.056 3.944 8 H 0.056 0.944 9 C -0.541 4.541 10 H 0.066 0.934 11 C 0.075 3.925 12 N -0.841 5.841 13 Si 0.884 3.116 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.013 4.013 18 C -0.065 4.065 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.100 4.100 23 C -0.143 4.143 24 C 0.045 3.955 25 O -0.379 6.379 26 C 0.054 3.946 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.395 0.605 33 H 0.265 0.735 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -5.403 -5.408 9.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C 0.018 3.982 4 N -0.389 5.389 5 C 0.340 3.660 6 O -0.424 6.424 7 C 0.035 3.965 8 H 0.074 0.926 9 C -0.579 4.579 10 H 0.084 0.916 11 C -0.133 4.133 12 N -0.473 5.473 13 Si 0.712 3.288 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.014 4.014 18 C -0.083 4.083 19 C -0.166 4.166 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.119 4.119 23 C -0.182 4.182 24 C -0.032 4.032 25 O -0.298 6.298 26 C -0.023 4.023 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.679 -5.158 -5.939 9.153 hybrid contribution 0.638 -0.571 0.940 1.271 sum -4.041 -5.728 -4.999 8.611 Atomic orbital electron populations 1.21821 0.93149 1.01756 1.02427 1.22180 0.97094 0.95761 0.95524 1.21083 0.98584 0.88956 0.89552 1.45818 1.54529 1.13485 1.25109 1.20999 0.78645 0.80628 0.85750 1.90536 1.36850 1.67320 1.47745 1.17875 0.95441 0.89893 0.93279 0.92628 1.20650 0.92336 1.40374 1.04553 0.91594 1.25040 0.96986 0.94985 0.96264 1.70065 1.02133 1.41553 1.33568 0.86768 0.77838 0.80679 0.83565 1.19984 1.21306 1.19970 1.19812 0.94968 0.94498 0.92127 1.21145 0.94707 0.93029 0.99446 1.20991 1.02599 0.95636 0.97381 1.20766 1.02638 0.98889 0.94046 1.20817 1.02101 0.96136 0.97220 1.20968 1.00064 0.93201 0.97636 1.22996 1.00446 0.97175 0.97550 1.23370 0.97022 0.98454 0.84343 1.89115 1.83102 1.26679 1.30883 1.23627 1.00974 0.81823 0.95852 0.92353 0.92333 0.91891 0.92533 0.92309 0.77133 0.92481 0.85464 0.88079 0.88247 0.88151 0.87555 0.90454 0.90183 0.89454 0.92367 0.91367 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.11 37.16 0.30 -1.24 16 2 C -0.10 -1.37 0.75 -152.94 -0.11 -1.48 16 3 C 0.14 2.36 4.31 -4.04 -0.02 2.34 16 4 N -0.74 -13.84 4.98 -60.29 -0.30 -14.14 16 5 C 0.55 12.65 5.45 -10.99 -0.06 12.59 16 6 O -0.55 -14.33 13.95 5.56 0.08 -14.26 16 7 C 0.06 1.30 2.78 -94.07 -0.26 1.04 16 8 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 9 C -0.54 -12.92 7.11 -34.44 -0.24 -13.16 16 10 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.08 1.87 4.00 -17.82 -0.07 1.80 16 12 N -0.84 -22.62 10.89 55.43 0.60 -22.02 16 13 Si 0.88 19.65 29.54 -169.99 -5.02 14.63 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C -0.01 -0.31 4.51 -104.62 -0.47 -0.78 16 18 C -0.07 -1.52 8.20 -39.58 -0.32 -1.85 16 19 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 20 C -0.15 -2.89 10.05 -39.58 -0.40 -3.28 16 21 C -0.14 -2.97 10.05 -39.58 -0.40 -3.37 16 22 C -0.10 -2.27 8.21 -39.58 -0.33 -2.60 16 23 C -0.14 -1.60 6.38 -25.16 -0.16 -1.76 16 24 C 0.05 0.52 7.64 37.94 0.29 0.81 16 25 O -0.38 -5.54 11.65 -35.23 -0.41 -5.95 16 26 C 0.05 0.78 6.27 37.93 0.24 1.02 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.73 6.88 -51.93 -0.36 0.37 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 32 H 0.39 6.80 6.94 -40.82 -0.28 6.51 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.13 3.06 6.04 -52.49 -0.32 2.75 16 35 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.11 2.38 7.01 -52.48 -0.37 2.01 16 39 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 40 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.12 7.85 -51.93 -0.41 0.72 16 44 H 0.09 1.30 7.87 -51.93 -0.41 0.89 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -29.40 351.54 -8.89 -38.29 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.72 Total: 11.58 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.42 Total: -13.43 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.30 Total: -36.16 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.33 Total: -20.20 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.40 -8.89 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411286280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.508 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds