Wall clock time and date at job start Tue Mar 31 2020 07:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 110.45616 * 2 1 4 4 N 1.46496 * 109.46976 * 59.30042 * 3 2 1 5 5 C 1.34777 * 120.00098 * 180.27663 * 4 3 2 6 6 O 1.21277 * 119.99924 * 359.72524 * 5 4 3 7 7 C 1.50700 * 119.99908 * 179.72265 * 5 4 3 8 8 H 1.08991 * 109.47164 * 299.99713 * 7 5 4 9 9 C 1.50698 * 109.47232 * 60.00087 * 7 5 4 10 10 H 1.07997 * 120.00068 * 235.33916 * 9 7 5 11 11 C 1.37877 * 120.00142 * 55.34131 * 9 7 5 12 12 N 1.31515 * 119.99905 * 1.97897 * 11 9 7 13 13 Si 1.86799 * 120.00178 * 181.97996 * 11 9 7 14 14 H 1.48496 * 109.47189 * 59.99982 * 13 11 9 15 15 H 1.48505 * 109.47152 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46869 * 300.00032 * 13 11 9 17 17 C 1.50704 * 109.46852 * 179.97438 * 7 5 4 18 18 C 1.38234 * 120.00005 * 226.94684 * 17 7 5 19 19 C 1.38240 * 119.99722 * 179.80936 * 18 17 7 20 20 C 1.38236 * 120.00249 * 0.42292 * 19 18 17 21 21 C 1.38237 * 119.99669 * 359.80762 * 20 19 18 22 22 C 1.38235 * 119.99965 * 47.21914 * 17 7 5 23 23 C 1.54510 * 110.51141 * 237.39828 * 2 1 3 24 24 C 1.54483 * 104.06138 * 241.21615 * 23 2 1 25 25 O 1.44429 * 104.80107 * 23.97786 * 24 23 2 26 26 C 1.44646 * 105.36805 * 319.56417 * 25 24 23 27 27 H 1.09000 * 109.46904 * 60.70018 * 1 2 3 28 28 H 1.08999 * 109.47018 * 180.69928 * 1 2 3 29 29 H 1.09000 * 109.47437 * 300.70169 * 1 2 3 30 30 H 1.08997 * 109.46881 * 299.30216 * 3 2 1 31 31 H 1.09001 * 109.47240 * 179.29889 * 3 2 1 32 32 H 0.97004 * 120.00326 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99977 * 179.97438 * 12 11 9 34 34 H 1.08000 * 120.00256 * 359.97438 * 18 17 7 35 35 H 1.08004 * 119.99643 * 180.20717 * 19 18 17 36 36 H 1.07992 * 120.00213 * 179.78933 * 20 19 18 37 37 H 1.07999 * 119.99996 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00399 * 359.97438 * 22 17 7 39 39 H 1.08997 * 110.51207 * 359.86037 * 23 2 1 40 40 H 1.09000 * 110.51200 * 122.43700 * 23 2 1 41 41 H 1.08990 * 110.37161 * 142.81185 * 24 23 2 42 42 H 1.09002 * 110.37415 * 265.04019 * 24 23 2 43 43 H 1.08996 * 110.34128 * 281.58842 * 26 25 24 44 44 H 1.08998 * 110.50233 * 159.18497 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 7 1.5747 2.1375 1.1876 5 6 1.9154 3.4247 1.3966 6 8 2.6318 3.9986 0.6040 7 6 1.4062 4.1506 2.6151 8 1 0.3165 4.1659 2.5999 9 6 1.8815 3.4420 3.8572 10 1 1.1677 3.1130 4.5978 11 6 3.2278 3.2138 4.0482 12 7 4.1002 3.6488 3.1655 13 14 3.8126 2.2867 5.5608 14 1 3.2134 0.9280 5.5710 15 1 5.2931 2.1751 5.5314 16 1 3.3961 3.0205 6.7829 17 6 1.9290 5.5641 2.6126 18 6 2.4799 6.0993 3.7619 19 6 2.9630 7.3945 3.7584 20 6 2.8872 8.1575 2.6082 21 6 2.3318 7.6239 1.4603 22 6 1.8523 6.3274 1.4626 23 6 2.0714 -0.7797 -1.2191 24 6 2.8787 -1.9393 -0.5946 25 8 2.3119 -2.1165 0.7219 26 6 2.0713 -0.7796 1.2188 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3634 0.5247 0.8836 30 1 1.7205 1.9497 -0.8962 31 1 3.1545 1.4149 0.0126 32 1 1.0014 1.6786 1.8214 33 1 5.0474 3.4885 3.3001 34 1 2.5355 5.5046 4.6617 35 1 3.3966 7.8115 4.6555 36 1 3.2614 9.1705 2.6065 37 1 2.2721 8.2201 0.5617 38 1 1.4182 5.9106 0.5657 39 1 1.2491 -1.1673 -1.8205 40 1 2.7181 -0.1432 -1.8231 41 1 2.7575 -2.8473 -1.1853 42 1 3.9330 -1.6722 -0.5228 43 1 3.0010 -0.3337 1.5721 44 1 1.3302 -0.7968 2.0178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411286280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:55 Heat of formation + Delta-G solvation = -81.958430 kcal Electronic energy + Delta-G solvation = -25699.819115 eV Core-core repulsion = 22194.883029 eV Total energy + Delta-G solvation = -3504.936085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 10.47 seconds Orbital eigenvalues (eV) -41.14366 -40.39426 -39.00836 -36.32058 -35.46317 -33.48525 -32.60782 -31.33819 -30.67012 -29.22785 -27.69831 -26.69213 -25.47219 -23.62876 -22.94229 -22.13921 -20.91644 -20.38254 -18.65742 -17.75117 -17.19944 -17.00426 -16.89045 -16.51514 -16.25960 -16.06003 -15.69718 -15.32420 -15.14651 -14.93577 -14.31137 -14.16947 -13.97106 -13.86061 -13.71290 -13.60450 -13.25728 -13.00890 -12.75938 -12.69028 -12.56578 -12.34706 -12.25683 -11.90898 -11.77612 -11.71204 -11.61728 -11.40138 -11.16080 -10.72841 -10.62689 -10.14137 -9.63006 -9.36538 -9.08349 -8.06427 -6.25879 0.89274 0.94550 1.41799 1.45342 1.49707 2.33744 2.46302 2.76847 2.98648 3.20997 3.35958 3.55159 3.72099 3.79031 4.12738 4.22183 4.29677 4.35062 4.36933 4.51215 4.57706 4.62224 4.70475 4.71326 4.76275 4.82207 4.86207 4.91432 5.01417 5.02495 5.09171 5.10104 5.16883 5.19382 5.35750 5.47136 5.55923 5.70987 5.78091 5.89699 5.93162 5.98790 6.01098 6.44182 6.54397 6.76996 7.10204 7.42978 7.95454 8.91923 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.005117 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.544869 B = 5470.127550 C = 6643.582569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C 0.148 3.852 4 N -0.724 5.724 5 C 0.549 3.451 6 O -0.585 6.585 7 C 0.046 3.954 8 H 0.069 0.931 9 C -0.534 4.534 10 H 0.072 0.928 11 C 0.043 3.957 12 N -0.872 5.872 13 Si 0.934 3.066 14 H -0.267 1.267 15 H -0.300 1.300 16 H -0.268 1.268 17 C -0.034 4.034 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.118 4.118 23 C -0.138 4.138 24 C 0.039 3.961 25 O -0.393 6.393 26 C 0.054 3.946 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.403 0.597 33 H 0.254 0.746 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.053 0.947 43 H 0.039 0.961 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 -5.630 -5.781 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 C 0.024 3.976 4 N -0.377 5.377 5 C 0.338 3.662 6 O -0.465 6.465 7 C 0.025 3.975 8 H 0.087 0.913 9 C -0.571 4.571 10 H 0.090 0.910 11 C -0.162 4.162 12 N -0.506 5.506 13 Si 0.760 3.240 14 H -0.191 1.191 15 H -0.226 1.226 16 H -0.193 1.193 17 C -0.035 4.035 18 C -0.106 4.106 19 C -0.171 4.171 20 C -0.160 4.160 21 C -0.165 4.165 22 C -0.136 4.136 23 C -0.176 4.176 24 C -0.038 4.038 25 O -0.312 6.312 26 C -0.022 4.022 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.238 0.762 33 H 0.063 0.937 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.661 -5.423 -6.294 10.054 hybrid contribution 0.915 -0.473 1.037 1.462 sum -4.746 -5.896 -5.257 9.216 Atomic orbital electron populations 1.21803 0.91365 1.02781 1.02786 1.22108 0.98331 0.93173 0.96042 1.21119 0.96946 0.91064 0.88502 1.45703 1.53743 1.12435 1.25823 1.20990 0.78197 0.81657 0.85342 1.90502 1.38593 1.68434 1.48948 1.18003 0.96242 0.90124 0.93119 0.91348 1.20860 0.92277 1.39262 1.04745 0.90990 1.25526 0.97141 0.95562 0.97968 1.70231 1.01599 1.43488 1.35299 0.85976 0.76555 0.80091 0.81338 1.19147 1.22613 1.19342 1.19936 0.95930 0.94841 0.92816 1.21125 0.96331 0.94266 0.98857 1.21314 1.01877 0.94896 0.98976 1.21171 1.01415 1.00373 0.93050 1.21194 1.00981 0.95536 0.98748 1.21041 1.01116 0.94354 0.97113 1.23012 1.01160 0.96663 0.96770 1.23588 0.96745 0.99970 0.83449 1.89100 1.83331 1.26390 1.32367 1.23538 0.99779 0.82225 0.96701 0.91321 0.90902 0.92285 0.92316 0.95166 0.76163 0.93654 0.87082 0.85682 0.84488 0.85286 0.88215 0.88062 0.89940 0.86733 0.92875 0.94262 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.11 71.98 0.58 -2.12 16 2 C -0.10 -2.40 0.75 -51.16 -0.04 -2.44 16 3 C 0.15 4.92 4.31 86.38 0.37 5.30 16 4 N -0.72 -27.59 4.98 -463.06 -2.31 -29.90 16 5 C 0.55 25.73 5.45 87.66 0.48 26.21 16 6 O -0.59 -31.49 13.95 -3.02 -0.04 -31.53 16 7 C 0.05 2.17 2.78 -13.03 -0.04 2.13 16 8 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 9 C -0.53 -25.63 7.11 25.60 0.18 -25.45 16 10 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 11 C 0.04 2.14 4.00 84.65 0.34 2.48 16 12 N -0.87 -48.16 10.89 21.45 0.23 -47.92 16 13 Si 0.93 40.68 29.54 68.60 2.03 42.70 16 14 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 C -0.03 -1.64 4.51 -19.86 -0.09 -1.73 16 18 C -0.09 -4.11 8.20 22.27 0.18 -3.93 16 19 C -0.15 -6.21 10.05 22.27 0.22 -5.99 16 20 C -0.14 -5.32 10.05 22.27 0.22 -5.09 16 21 C -0.15 -5.81 10.05 22.27 0.22 -5.58 16 22 C -0.12 -5.36 8.21 22.27 0.18 -5.17 16 23 C -0.14 -2.80 6.38 31.61 0.20 -2.60 16 24 C 0.04 0.84 7.64 72.49 0.55 1.39 16 25 O -0.39 -11.02 11.65 -148.98 -1.74 -12.75 16 26 C 0.05 1.56 6.27 72.48 0.45 2.01 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.27 6.88 -2.39 -0.02 1.25 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.40 13.86 6.94 -92.71 -0.64 13.22 16 33 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.11 5.45 6.04 -2.91 -0.02 5.43 16 35 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.10 4.55 7.01 -2.91 -0.02 4.53 16 39 H 0.10 1.61 7.73 -2.39 -0.02 1.60 16 40 H 0.08 1.65 7.73 -2.39 -0.02 1.63 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.04 1.34 7.85 -2.39 -0.02 1.32 16 44 H 0.10 2.68 7.87 -2.39 -0.02 2.66 16 Total: -1.00 -64.07 351.54 2.56 -61.51 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: 0.35 Total: 38.48 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.04 Total: -20.59 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.07 Total: -77.82 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.78 Total: -44.28 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -64.07 2.56 -61.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411286280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.451 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.47 seconds