Wall clock time and date at job start Tue Mar 31 2020 09:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 C 1.53002 * 112.99473 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46633 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99729 * 179.72401 * 5 4 3 7 7 O 1.21286 * 120.00053 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00049 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.46984 * 299.99877 * 8 6 5 10 10 C 1.50694 * 109.47362 * 59.99839 * 8 6 5 11 11 H 1.07995 * 120.00017 * 33.93583 * 10 8 6 12 12 C 1.37878 * 120.00052 * 213.93820 * 10 8 6 13 13 N 1.31506 * 120.00211 * 6.38615 * 12 10 8 14 14 Si 1.86804 * 119.99990 * 186.39044 * 12 10 8 15 15 H 1.48500 * 109.47065 * 89.99878 * 14 12 10 16 16 H 1.48501 * 109.47126 * 210.00063 * 14 12 10 17 17 H 1.48501 * 109.47204 * 329.99860 * 14 12 10 18 18 C 1.50697 * 109.47205 * 180.02562 * 8 6 5 19 19 C 1.38241 * 119.99956 * 293.83873 * 18 8 6 20 20 C 1.38229 * 120.00056 * 179.78868 * 19 18 8 21 21 C 1.38233 * 120.00028 * 0.44536 * 20 19 18 22 22 C 1.38229 * 120.00013 * 359.81310 * 21 20 19 23 23 C 1.38229 * 120.00367 * 359.97438 * 22 21 20 24 24 C 1.54036 * 113.81897 * 311.82362 * 3 2 1 25 25 O 1.44448 * 85.41999 * 91.80890 * 24 3 2 26 26 C 1.44172 * 93.38252 * 24.09214 * 25 24 3 27 27 H 1.08999 * 109.47105 * 59.99926 * 1 2 3 28 28 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47152 * 300.00321 * 1 2 3 30 30 H 1.09003 * 109.47061 * 240.00361 * 2 1 3 31 31 H 1.08999 * 109.47105 * 120.00074 * 2 1 3 32 32 H 1.08999 * 109.47241 * 60.00226 * 4 3 2 33 33 H 1.08993 * 109.47494 * 299.99926 * 4 3 2 34 34 H 0.96992 * 120.00162 * 0.02562 * 5 4 3 35 35 H 0.97007 * 120.00369 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.99639 * 0.02562 * 19 18 8 37 37 H 1.08006 * 119.99905 * 180.27949 * 20 19 18 38 38 H 1.08004 * 120.00168 * 179.83218 * 21 20 19 39 39 H 1.08008 * 120.00145 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00290 * 180.02562 * 23 22 21 41 41 H 1.08995 * 113.86547 * 205.91834 * 24 3 2 42 42 H 1.09003 * 113.86290 * 337.62197 * 24 3 2 43 43 H 1.09003 * 113.86201 * 221.76690 * 26 25 24 44 44 H 1.08996 * 113.86777 * 90.06062 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5671 1.5367 0.0006 5 7 3.9695 2.9454 0.0000 6 6 5.2769 3.2727 0.0060 7 8 6.1202 2.4011 0.0115 8 6 5.6908 4.7217 0.0059 9 1 5.3010 5.2109 -0.8868 10 6 5.1396 5.4017 1.2325 11 1 5.0492 4.8540 2.1589 12 6 4.7508 6.7232 1.1722 13 7 4.7421 7.3540 0.0183 14 14 4.2365 7.6175 2.7295 15 1 5.4258 8.2540 3.3505 16 1 3.2353 8.6614 2.3931 17 1 3.6394 6.6480 3.6829 18 6 7.1949 4.8145 0.0126 19 6 7.9096 4.3755 1.1115 20 6 9.2895 4.4566 1.1159 21 6 9.9543 4.9850 0.0252 22 6 9.2394 5.4288 -1.0714 23 6 7.8598 5.3438 -1.0777 24 6 1.3614 2.3423 -1.0501 25 8 0.4264 2.6675 0.0019 26 6 1.3614 2.3422 1.0501 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9617 1.0460 -0.8891 33 1 3.9610 1.0463 0.8908 34 1 3.2950 3.6424 -0.0004 35 1 4.4688 8.2838 -0.0241 36 1 7.3900 3.9658 1.9650 37 1 9.8481 4.1095 1.9727 38 1 11.0323 5.0508 0.0298 39 1 9.7588 5.8421 -1.9235 40 1 7.3012 5.6902 -1.9348 41 1 1.9742 3.1844 -1.3715 42 1 0.9186 1.7933 -1.8812 43 1 0.9186 1.7932 1.8812 44 1 1.9741 3.1844 1.3715 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417453367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:31 Heat of formation + Delta-G solvation = -34.605811 kcal Electronic energy + Delta-G solvation = -25256.308231 eV Core-core repulsion = 21753.425509 eV Total energy + Delta-G solvation = -3502.882722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06809 -39.02376 -37.66605 -34.41227 -33.67365 -33.10810 -31.11603 -29.95482 -29.26935 -27.30528 -26.57313 -25.14180 -23.97390 -23.05747 -21.61263 -20.78952 -19.37973 -18.52123 -17.00040 -16.57400 -16.21756 -16.06160 -15.81677 -15.32396 -14.68401 -14.55338 -14.33059 -14.25300 -13.91507 -13.65801 -13.08013 -12.78315 -12.67671 -12.42718 -12.33621 -12.16690 -12.01899 -11.69115 -11.61079 -11.39736 -11.34455 -11.08097 -11.02874 -10.42466 -10.37784 -10.31257 -10.28865 -10.01187 -9.46775 -9.43987 -8.81906 -8.61775 -8.37629 -7.96481 -7.63486 -6.30713 -4.36126 2.35657 2.38626 3.19259 3.26863 3.27652 3.68029 3.72608 3.98885 4.09910 4.26884 4.70404 4.80801 4.86327 5.07322 5.12539 5.20445 5.46120 5.49372 5.51586 5.55781 5.70632 5.74787 5.78163 5.86021 5.87276 5.89779 6.03676 6.05848 6.18889 6.20229 6.22056 6.25443 6.34720 6.48132 6.58054 6.85129 6.95552 7.12747 7.19840 7.35274 7.42826 7.59978 7.73816 7.93574 8.04992 8.31802 8.68074 9.20451 9.30296 10.77923 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.004939 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.890414 B = 5667.271933 C = 7053.941378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.138 4.138 4 C 0.129 3.871 5 N -0.732 5.732 6 C 0.528 3.472 7 O -0.567 6.567 8 C 0.048 3.952 9 H 0.092 0.908 10 C -0.516 4.516 11 H 0.062 0.938 12 C 0.076 3.924 13 N -0.878 5.878 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.271 1.271 18 C -0.011 4.011 19 C -0.084 4.084 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.120 4.120 24 C 0.041 3.959 25 O -0.377 6.377 26 C 0.040 3.960 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.404 0.596 35 H 0.268 0.732 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -9.094 -1.236 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.139 4.139 4 C 0.004 3.996 5 N -0.387 5.387 6 C 0.318 3.682 7 O -0.446 6.446 8 C 0.027 3.973 9 H 0.109 0.891 10 C -0.554 4.554 11 H 0.080 0.920 12 C -0.129 4.129 13 N -0.514 5.514 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.013 4.013 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.167 4.167 22 C -0.150 4.150 23 C -0.139 4.139 24 C -0.036 4.036 25 O -0.295 6.295 26 C -0.037 4.037 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.241 0.759 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.125 -9.437 -1.330 10.385 hybrid contribution -0.313 0.955 0.869 1.329 sum -4.438 -8.482 -0.461 9.584 Atomic orbital electron populations 1.21792 0.94892 1.00800 1.03014 1.21197 0.96454 0.93004 1.02692 1.23947 0.95565 0.97464 0.96919 1.21027 0.91917 0.84547 1.02078 1.46081 1.08653 1.06744 1.77232 1.21632 0.81032 0.92855 0.72678 1.90584 1.51085 1.52084 1.50837 1.18133 0.89243 0.87961 1.01939 0.89052 1.20663 1.43375 0.96301 0.95052 0.91976 1.24948 0.94193 0.97459 0.96301 1.69869 1.46011 1.11554 1.23961 0.86519 0.78501 0.79601 0.83083 1.20291 1.20995 1.19602 1.20057 0.96333 0.92882 0.91984 1.20825 0.92966 0.98345 0.98123 1.20961 0.94799 1.01468 0.98039 1.20802 0.98514 1.02495 0.94875 1.20903 0.94408 1.01639 0.98050 1.21003 0.93766 1.00654 0.98433 1.24141 0.90101 0.97157 0.92226 1.89697 1.32641 1.90507 1.16681 1.24143 0.90051 0.97367 0.92160 0.92227 0.93205 0.92194 0.91177 0.91148 0.91741 0.91667 0.75885 0.92258 0.87115 0.87581 0.87696 0.87538 0.86989 0.89462 0.89234 0.89293 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.63 37.16 0.32 -1.08 16 2 C -0.10 -0.94 5.65 -26.73 -0.15 -1.09 16 3 C -0.14 -1.65 1.38 -153.43 -0.21 -1.87 16 4 C 0.13 1.89 5.32 -4.04 -0.02 1.87 16 5 N -0.73 -13.02 4.60 -60.29 -0.28 -13.30 16 6 C 0.53 11.48 7.04 -10.99 -0.08 11.40 16 7 O -0.57 -13.55 15.42 5.55 0.09 -13.46 16 8 C 0.05 1.13 2.44 -94.08 -0.23 0.90 16 9 H 0.09 2.27 7.00 -51.93 -0.36 1.91 16 10 C -0.52 -12.69 7.46 -34.44 -0.26 -12.95 16 11 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 12 C 0.08 1.91 5.45 -17.82 -0.10 1.81 16 13 N -0.88 -22.91 12.78 55.43 0.71 -22.20 16 14 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C -0.01 -0.27 4.30 -104.62 -0.45 -0.72 16 19 C -0.08 -1.89 8.31 -39.58 -0.33 -2.22 16 20 C -0.13 -2.65 10.05 -39.59 -0.40 -3.04 16 21 C -0.15 -2.76 10.05 -39.59 -0.40 -3.16 16 22 C -0.13 -2.54 10.05 -39.59 -0.40 -2.94 16 23 C -0.12 -2.62 9.67 -39.58 -0.38 -3.00 16 24 C 0.04 0.50 7.45 37.64 0.28 0.78 16 25 O -0.38 -5.29 10.87 -35.23 -0.38 -5.67 16 26 C 0.04 0.51 7.44 37.64 0.28 0.79 16 27 H 0.06 0.60 6.53 -51.93 -0.34 0.26 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.40 7.07 5.72 -40.82 -0.23 6.83 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 36 H 0.11 2.50 7.89 -52.49 -0.41 2.08 16 37 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 41 H 0.09 1.16 6.68 -51.93 -0.35 0.82 16 42 H 0.09 0.95 7.33 -51.93 -0.38 0.57 16 43 H 0.09 1.00 7.33 -51.93 -0.38 0.62 16 44 H 0.09 1.32 6.68 -51.93 -0.35 0.98 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -28.49 355.89 -8.53 -37.02 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.49 Total: 11.89 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -2.52 Total: -14.50 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.43 Total: -35.50 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.30 Total: -19.13 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.49 -8.53 -37.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417453367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.416 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds