Wall clock time and date at job start Tue Mar 31 2020 09:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 C 1.53002 * 112.99473 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46633 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99729 * 179.72401 * 5 4 3 7 7 O 1.21286 * 120.00053 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00049 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.46984 * 299.99877 * 8 6 5 10 10 C 1.50694 * 109.47362 * 59.99839 * 8 6 5 11 11 H 1.07995 * 120.00017 * 33.93583 * 10 8 6 12 12 C 1.37878 * 120.00052 * 213.93820 * 10 8 6 13 13 N 1.31506 * 120.00211 * 6.38615 * 12 10 8 14 14 Si 1.86804 * 119.99990 * 186.39044 * 12 10 8 15 15 H 1.48500 * 109.47065 * 89.99878 * 14 12 10 16 16 H 1.48501 * 109.47126 * 210.00063 * 14 12 10 17 17 H 1.48501 * 109.47204 * 329.99860 * 14 12 10 18 18 C 1.50697 * 109.47205 * 180.02562 * 8 6 5 19 19 C 1.38241 * 119.99956 * 293.83873 * 18 8 6 20 20 C 1.38229 * 120.00056 * 179.78868 * 19 18 8 21 21 C 1.38233 * 120.00028 * 0.44536 * 20 19 18 22 22 C 1.38229 * 120.00013 * 359.81310 * 21 20 19 23 23 C 1.38229 * 120.00367 * 359.97438 * 22 21 20 24 24 C 1.54036 * 113.81897 * 311.82362 * 3 2 1 25 25 O 1.44448 * 85.41999 * 91.80890 * 24 3 2 26 26 C 1.44172 * 93.38252 * 24.09214 * 25 24 3 27 27 H 1.08999 * 109.47105 * 59.99926 * 1 2 3 28 28 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47152 * 300.00321 * 1 2 3 30 30 H 1.09003 * 109.47061 * 240.00361 * 2 1 3 31 31 H 1.08999 * 109.47105 * 120.00074 * 2 1 3 32 32 H 1.08999 * 109.47241 * 60.00226 * 4 3 2 33 33 H 1.08993 * 109.47494 * 299.99926 * 4 3 2 34 34 H 0.96992 * 120.00162 * 0.02562 * 5 4 3 35 35 H 0.97007 * 120.00369 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.99639 * 0.02562 * 19 18 8 37 37 H 1.08006 * 119.99905 * 180.27949 * 20 19 18 38 38 H 1.08004 * 120.00168 * 179.83218 * 21 20 19 39 39 H 1.08008 * 120.00145 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00290 * 180.02562 * 23 22 21 41 41 H 1.08995 * 113.86547 * 205.91834 * 24 3 2 42 42 H 1.09003 * 113.86290 * 337.62197 * 24 3 2 43 43 H 1.09003 * 113.86201 * 221.76690 * 26 25 24 44 44 H 1.08996 * 113.86777 * 90.06062 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5671 1.5367 0.0006 5 7 3.9695 2.9454 0.0000 6 6 5.2769 3.2727 0.0060 7 8 6.1202 2.4011 0.0115 8 6 5.6908 4.7217 0.0059 9 1 5.3010 5.2109 -0.8868 10 6 5.1396 5.4017 1.2325 11 1 5.0492 4.8540 2.1589 12 6 4.7508 6.7232 1.1722 13 7 4.7421 7.3540 0.0183 14 14 4.2365 7.6175 2.7295 15 1 5.4258 8.2540 3.3505 16 1 3.2353 8.6614 2.3931 17 1 3.6394 6.6480 3.6829 18 6 7.1949 4.8145 0.0126 19 6 7.9096 4.3755 1.1115 20 6 9.2895 4.4566 1.1159 21 6 9.9543 4.9850 0.0252 22 6 9.2394 5.4288 -1.0714 23 6 7.8598 5.3438 -1.0777 24 6 1.3614 2.3423 -1.0501 25 8 0.4264 2.6675 0.0019 26 6 1.3614 2.3422 1.0501 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9617 1.0460 -0.8891 33 1 3.9610 1.0463 0.8908 34 1 3.2950 3.6424 -0.0004 35 1 4.4688 8.2838 -0.0241 36 1 7.3900 3.9658 1.9650 37 1 9.8481 4.1095 1.9727 38 1 11.0323 5.0508 0.0298 39 1 9.7588 5.8421 -1.9235 40 1 7.3012 5.6902 -1.9348 41 1 1.9742 3.1844 -1.3715 42 1 0.9186 1.7933 -1.8812 43 1 0.9186 1.7932 1.8812 44 1 1.9741 3.1844 1.3715 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417453367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:29 Heat of formation + Delta-G solvation = -50.365897 kcal Electronic energy + Delta-G solvation = -25256.991639 eV Core-core repulsion = 21753.425509 eV Total energy + Delta-G solvation = -3503.566130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.16476 -40.67388 -39.26539 -35.76839 -35.52585 -34.18185 -32.89327 -31.54469 -30.47376 -28.91846 -27.60555 -26.48306 -25.58984 -24.13388 -23.21418 -22.32438 -21.00633 -19.53813 -18.75494 -18.16848 -17.59801 -17.20570 -17.13960 -16.78364 -16.41210 -15.89369 -15.80715 -15.43093 -15.42135 -15.19872 -14.40684 -14.20305 -14.02458 -13.94432 -13.87161 -13.33974 -13.30609 -13.15117 -12.89994 -12.87677 -12.77976 -12.38084 -12.30670 -12.17830 -11.96214 -11.66243 -11.39377 -11.30155 -11.27072 -10.72829 -10.49851 -10.43270 -9.90830 -9.56850 -9.27576 -8.23916 -6.33885 0.74503 0.79308 1.40369 1.43272 1.50812 1.93626 2.40612 2.47595 2.74634 3.06367 3.07740 3.26178 3.70262 3.84407 4.13623 4.21418 4.29605 4.36911 4.38359 4.41939 4.45615 4.53004 4.54857 4.63875 4.69840 4.70689 4.77545 4.87584 4.96337 5.03087 5.11867 5.12896 5.14434 5.21411 5.28223 5.35923 5.44235 5.50793 5.62618 5.66364 5.77812 5.82378 5.93742 6.22488 6.39382 6.67430 6.75058 7.32865 7.51812 8.84461 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.004939 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.890414 B = 5667.271933 C = 7053.941378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.122 4.122 4 C 0.129 3.871 5 N -0.721 5.721 6 C 0.527 3.473 7 O -0.591 6.591 8 C 0.050 3.950 9 H 0.068 0.932 10 C -0.515 4.515 11 H 0.053 0.947 12 C 0.037 3.963 13 N -0.905 5.905 14 Si 0.949 3.051 15 H -0.281 1.281 16 H -0.281 1.281 17 H -0.264 1.264 18 C -0.040 4.040 19 C -0.110 4.110 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.129 4.129 23 C -0.145 4.145 24 C 0.038 3.962 25 O -0.390 6.390 26 C 0.035 3.965 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.405 0.595 35 H 0.267 0.733 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 -10.018 -0.904 10.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.123 4.123 4 C 0.005 3.995 5 N -0.373 5.373 6 C 0.316 3.684 7 O -0.473 6.473 8 C 0.028 3.972 9 H 0.086 0.914 10 C -0.553 4.553 11 H 0.072 0.928 12 C -0.165 4.165 13 N -0.542 5.542 14 Si 0.774 3.226 15 H -0.207 1.207 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.041 4.041 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.147 4.147 23 C -0.163 4.163 24 C -0.039 4.039 25 O -0.308 6.308 26 C -0.041 4.041 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.604 -10.375 -0.995 11.028 hybrid contribution -0.441 1.211 0.731 1.482 sum -4.045 -9.164 -0.264 10.020 Atomic orbital electron populations 1.21754 0.94353 1.01705 1.02313 1.21234 0.96758 0.91119 1.03837 1.23896 0.93184 0.98982 0.96232 1.21186 0.94004 0.82278 1.01994 1.46007 1.07346 1.08451 1.75546 1.21363 0.82078 0.92037 0.72889 1.90550 1.52004 1.52322 1.52379 1.18024 0.90043 0.88756 1.00338 0.91401 1.20726 1.43036 0.96476 0.95072 0.92827 1.25548 0.94441 0.98042 0.98514 1.69966 1.47184 1.11681 1.25389 0.85690 0.77955 0.78644 0.80278 1.20715 1.20596 1.18872 1.20143 0.96193 0.94516 0.93250 1.20856 0.94510 0.99793 0.97628 1.21339 0.93778 1.00612 0.99566 1.21283 1.00614 1.00536 0.93654 1.21307 0.93360 1.00572 0.99479 1.21156 0.95368 1.01606 0.98156 1.24224 0.89942 0.96940 0.92799 1.89688 1.33140 1.90694 1.17326 1.24174 0.90026 0.97070 0.92873 0.92806 0.91495 0.93013 0.89908 0.90181 0.91496 0.91960 0.75755 0.92329 0.88584 0.84598 0.83494 0.84217 0.87513 0.90999 0.87000 0.87387 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.63 71.98 0.62 -1.79 16 2 C -0.09 -1.60 5.65 30.60 0.17 -1.42 16 3 C -0.12 -2.81 1.38 -51.48 -0.07 -2.88 16 4 C 0.13 3.76 5.32 86.38 0.46 4.22 16 5 N -0.72 -26.43 4.60 -463.05 -2.13 -28.56 16 6 C 0.53 23.78 7.04 87.66 0.62 24.40 16 7 O -0.59 -29.03 15.42 -3.05 -0.05 -29.07 16 8 C 0.05 2.43 2.44 -13.04 -0.03 2.39 16 9 H 0.07 3.58 7.00 -2.39 -0.02 3.57 16 10 C -0.52 -26.20 7.46 25.60 0.19 -26.01 16 11 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 12 C 0.04 1.88 5.45 84.66 0.46 2.34 16 13 N -0.91 -48.56 12.78 21.45 0.27 -48.28 16 14 Si 0.95 41.27 29.54 68.60 2.03 43.30 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 18 C -0.04 -1.92 4.30 -19.86 -0.09 -2.00 16 19 C -0.11 -4.96 8.31 22.27 0.19 -4.78 16 20 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 21 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 22 C -0.13 -4.73 10.05 22.27 0.22 -4.51 16 23 C -0.14 -6.37 9.67 22.27 0.22 -6.15 16 24 C 0.04 0.91 7.45 72.30 0.54 1.45 16 25 O -0.39 -10.72 10.87 -148.98 -1.62 -12.34 16 26 C 0.04 0.90 7.44 72.30 0.54 1.43 16 27 H 0.05 0.96 6.53 -2.39 -0.02 0.95 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.95 6.53 -2.39 -0.02 0.94 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.41 14.80 5.72 -92.71 -0.53 14.27 16 35 H 0.27 13.72 8.31 -92.70 -0.77 12.95 16 36 H 0.10 4.49 7.89 -2.91 -0.02 4.47 16 37 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 39 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.11 4.65 7.95 -2.91 -0.02 4.62 16 41 H 0.07 1.96 6.68 -2.39 -0.02 1.94 16 42 H 0.11 2.20 7.33 -2.39 -0.02 2.18 16 43 H 0.11 2.31 7.33 -2.39 -0.02 2.29 16 44 H 0.07 2.10 6.68 -2.39 -0.02 2.08 16 Total: -1.00 -62.35 355.89 3.45 -58.90 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: 0.47 Total: 38.88 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.48 Total: -22.82 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.86 Total: -76.84 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.67 Total: -41.41 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.35 3.45 -58.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417453367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.530 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds