Wall clock time and date at job start Tue Mar 31 2020 08:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.55204 * 2 1 4 4 C 1.53293 * 109.51275 * 120.12468 * 2 1 3 5 5 N 1.47158 * 108.38479 * 172.23188 * 4 2 1 6 6 C 1.34773 * 120.98654 * 129.44153 * 5 4 2 7 7 O 1.21277 * 119.99753 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00061 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.46646 * 300.00057 * 8 6 5 10 10 C 1.50701 * 109.47188 * 59.99988 * 8 6 5 11 11 H 1.07993 * 119.99927 * 235.40600 * 10 8 6 12 12 C 1.37872 * 119.99894 * 55.40393 * 10 8 6 13 13 N 1.31521 * 120.00339 * 2.06288 * 12 10 8 14 14 Si 1.86792 * 120.00069 * 182.06741 * 12 10 8 15 15 H 1.48508 * 109.47394 * 89.99889 * 14 12 10 16 16 H 1.48506 * 109.47469 * 210.00022 * 14 12 10 17 17 H 1.48500 * 109.47339 * 329.99504 * 14 12 10 18 18 C 1.50705 * 109.46697 * 180.02562 * 8 6 5 19 19 C 1.38231 * 120.00095 * 47.15838 * 18 8 6 20 20 C 1.38237 * 119.99772 * 179.97438 * 19 18 8 21 21 C 1.38239 * 119.99804 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00076 * 0.27452 * 21 20 19 23 23 C 1.38234 * 119.99306 * 227.13020 * 18 8 6 24 24 C 1.47156 * 118.02889 * 309.71436 * 5 4 2 25 25 C 1.52874 * 108.61044 * 50.23188 * 24 5 4 26 26 O 1.42958 * 109.51703 * 239.87420 * 2 1 3 27 27 H 1.08998 * 109.47381 * 299.86658 * 1 2 3 28 28 H 1.08996 * 109.47240 * 59.87634 * 1 2 3 29 29 H 1.09004 * 109.46955 * 179.87248 * 1 2 3 30 30 H 1.08995 * 109.47330 * 180.12705 * 3 2 1 31 31 H 1.08994 * 109.47069 * 300.12806 * 3 2 1 32 32 H 1.08997 * 109.47037 * 60.12478 * 3 2 1 33 33 H 1.09000 * 109.68477 * 52.51137 * 4 2 1 34 34 H 1.08999 * 109.71770 * 291.96514 * 4 2 1 35 35 H 0.97001 * 120.00627 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.00073 * 359.97307 * 19 18 8 37 37 H 1.07996 * 120.00087 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.99725 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.99927 * 179.72130 * 22 21 20 40 40 H 1.08000 * 120.00841 * 0.02562 * 23 18 8 41 41 H 1.09010 * 109.67502 * 170.00680 * 24 5 4 42 42 H 1.08999 * 109.68486 * 290.55740 * 24 5 4 43 43 H 1.08996 * 109.58237 * 187.92202 * 25 24 5 44 44 H 1.09004 * 109.37003 * 67.80825 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8760 1.1337 6 6 4.3194 -0.5032 2.1376 7 8 3.8555 -0.0357 3.1560 8 6 5.8105 -0.6681 1.9952 9 1 6.0464 -1.7210 1.8405 10 6 6.2942 0.1338 0.8145 11 1 6.8534 -0.3487 0.0267 12 6 6.0227 1.4835 0.7402 13 7 5.3769 2.0793 1.7188 14 14 6.5719 2.4659 -0.7506 15 1 5.5003 2.4465 -1.7785 16 1 6.8445 3.8686 -0.3461 17 1 7.8077 1.8638 -1.3124 18 6 6.4917 -0.1800 3.2478 19 6 6.0237 -0.5738 4.4874 20 6 6.6489 -0.1264 5.6363 21 6 7.7425 0.7144 5.5454 22 6 8.2073 1.1123 4.3058 23 6 7.5850 0.6611 3.1568 24 6 4.0410 -1.4404 -0.1136 25 6 3.4313 -0.6854 -1.2948 26 8 2.0076 -0.6763 -1.1654 27 1 -0.3634 0.5117 0.8911 28 1 -0.3633 0.5157 -0.8888 29 1 -0.3633 -1.0277 -0.0023 30 1 3.1320 1.4403 -0.0023 31 1 1.6775 1.9568 -0.8888 32 1 1.6812 1.9555 0.8911 33 1 1.5759 -1.7079 1.3208 34 1 1.8031 -0.1404 2.1380 35 1 5.1862 3.0289 1.6667 36 1 5.1696 -1.2309 4.5583 37 1 6.2831 -0.4336 6.6048 38 1 8.2307 1.0643 6.4430 39 1 9.0589 1.7727 4.2349 40 1 7.9507 0.9688 2.1883 41 1 5.1252 -1.3284 -0.1280 42 1 3.7796 -2.4964 -0.1821 43 1 3.7091 -1.1785 -2.2262 44 1 3.8029 0.3394 -1.2994 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433031609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:18 Heat of formation + Delta-G solvation = -46.744655 kcal Electronic energy + Delta-G solvation = -26913.812489 eV Core-core repulsion = 23410.403387 eV Total energy + Delta-G solvation = -3503.409101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.87808 -38.48688 -37.07373 -34.04934 -33.57568 -33.14017 -30.86163 -29.69037 -28.46951 -27.73051 -26.94779 -25.53429 -23.70984 -22.70108 -21.29421 -20.54894 -19.33779 -18.14901 -17.11116 -16.11906 -15.76409 -15.49084 -14.96675 -14.92734 -14.60558 -14.31612 -14.03489 -13.78764 -13.63975 -13.00728 -12.72607 -12.53969 -12.26987 -12.20630 -12.11750 -11.85689 -11.61876 -11.45364 -11.34058 -11.24535 -11.08996 -10.85627 -10.80805 -10.70780 -10.41156 -10.07415 -9.86946 -9.72395 -9.42857 -9.39811 -8.76634 -8.32592 -7.70186 -7.55594 -7.41160 -6.20440 -4.34758 2.53294 2.60309 3.11591 3.22686 3.23824 3.86548 4.09958 4.17183 4.29016 4.98771 5.04425 5.11711 5.31662 5.32385 5.62490 5.71751 5.81641 5.84751 5.90078 5.95338 5.98176 6.02581 6.04405 6.10741 6.12886 6.30893 6.34088 6.42936 6.44897 6.48276 6.60581 6.66803 6.75117 6.85280 6.86058 7.11617 7.19373 7.46239 7.54210 7.59523 7.63881 7.65003 7.74148 8.13829 8.23399 8.48031 8.69117 9.27958 9.61753 10.79171 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.006764 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.063677 B = 4138.719576 C = 5088.685756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.101 3.899 3 C -0.173 4.173 4 C 0.097 3.903 5 N -0.614 5.614 6 C 0.556 3.444 7 O -0.546 6.546 8 C 0.058 3.942 9 H 0.056 0.944 10 C -0.540 4.540 11 H 0.070 0.930 12 C 0.078 3.922 13 N -0.834 5.834 14 Si 0.875 3.125 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.269 1.269 18 C -0.015 4.015 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.064 4.064 24 C 0.075 3.925 25 C 0.046 3.954 26 O -0.383 6.383 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.265 0.735 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 -4.482 -2.714 6.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.061 3.939 3 C -0.231 4.231 4 C -0.027 4.027 5 N -0.349 5.349 6 C 0.348 3.652 7 O -0.422 6.422 8 C 0.037 3.963 9 H 0.074 0.926 10 C -0.577 4.577 11 H 0.088 0.912 12 C -0.130 4.130 13 N -0.466 5.466 14 Si 0.702 3.298 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.016 4.016 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.166 4.166 23 C -0.082 4.082 24 C -0.049 4.049 25 C -0.031 4.031 26 O -0.303 6.303 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.418 -4.104 -2.179 5.768 hybrid contribution 0.281 1.105 -0.693 1.334 sum -3.137 -3.000 -2.872 5.205 Atomic orbital electron populations 1.21696 0.92791 1.02343 1.02262 1.21798 0.94098 0.92081 0.85950 1.22333 1.04185 0.95276 1.01258 1.21974 0.82668 0.99617 0.98463 1.47853 1.04695 1.65384 1.16993 1.21038 0.89371 0.74014 0.80823 1.90527 1.77599 1.44167 1.29891 1.17895 0.88261 0.96640 0.93552 0.92631 1.20599 1.38404 0.93297 1.05406 0.91241 1.24987 0.94700 0.97751 0.95608 1.70071 1.36077 1.10960 1.29530 0.86850 0.79523 0.80056 0.83381 1.20308 1.21016 1.19400 1.19796 0.93587 0.94601 0.93601 1.20968 0.97955 1.00399 0.92502 1.20817 0.97379 1.00536 0.97492 1.20772 0.98305 1.00471 0.96704 1.20986 1.00765 1.01611 0.93233 1.21126 0.94766 0.94485 0.97792 1.22448 1.03218 0.95343 0.83877 1.22876 0.80736 1.01296 0.98224 1.87864 1.21669 1.77051 1.43668 0.91226 0.92029 0.92089 0.89964 0.93189 0.91977 0.92659 0.89070 0.92445 0.87586 0.88145 0.88251 0.88088 0.85442 0.85378 0.93326 0.88984 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.85 37.16 0.33 -1.47 16 2 C 0.10 1.70 1.11 -90.47 -0.10 1.60 16 3 C -0.17 -3.19 8.10 37.16 0.30 -2.89 16 4 C 0.10 1.77 5.31 -3.53 -0.02 1.76 16 5 N -0.61 -12.36 2.55 -172.52 -0.44 -12.80 16 6 C 0.56 12.87 5.41 -10.99 -0.06 12.81 16 7 O -0.55 -14.24 13.42 5.56 0.07 -14.17 16 8 C 0.06 1.30 2.01 -94.07 -0.19 1.11 16 9 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 10 C -0.54 -12.23 4.80 -34.44 -0.17 -12.39 16 11 H 0.07 1.51 7.49 -52.49 -0.39 1.12 16 12 C 0.08 1.85 3.99 -17.82 -0.07 1.78 16 13 N -0.83 -21.50 10.89 55.43 0.60 -20.90 16 14 Si 0.88 18.81 29.54 -169.99 -5.02 13.79 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 18 C -0.01 -0.35 4.52 -104.62 -0.47 -0.82 16 19 C -0.10 -2.24 8.21 -39.58 -0.33 -2.57 16 20 C -0.14 -2.93 10.05 -39.58 -0.40 -3.33 16 21 C -0.14 -2.83 10.05 -39.58 -0.40 -3.22 16 22 C -0.15 -3.04 10.05 -39.58 -0.40 -3.44 16 23 C -0.06 -1.45 8.19 -39.58 -0.32 -1.77 16 24 C 0.07 1.31 6.13 -3.75 -0.02 1.29 16 25 C 0.05 0.77 6.58 37.09 0.24 1.02 16 26 O -0.38 -6.65 10.23 -35.23 -0.36 -7.01 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.78 6.11 -51.93 -0.32 1.46 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.83 7.08 -51.93 -0.37 1.46 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.11 2.38 7.01 -52.49 -0.37 2.01 16 37 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.13 2.97 6.02 -52.49 -0.32 2.65 16 41 H 0.13 2.34 4.38 -51.92 -0.23 2.11 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.19 6.25 -51.93 -0.32 0.87 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -27.76 341.28 -8.58 -36.35 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.52 Total: 10.14 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.07 Total: -10.53 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.16 Total: -33.70 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.29 Total: -21.18 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.76 -8.58 -36.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433031609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.396 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds