Wall clock time and date at job start Tue Mar 31 2020 08:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.55204 * 2 1 4 4 C 1.53293 * 109.51275 * 120.12468 * 2 1 3 5 5 N 1.47158 * 108.38479 * 172.23188 * 4 2 1 6 6 C 1.34773 * 120.98654 * 129.44153 * 5 4 2 7 7 O 1.21277 * 119.99753 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00061 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.46646 * 300.00057 * 8 6 5 10 10 C 1.50701 * 109.47188 * 59.99988 * 8 6 5 11 11 H 1.07993 * 119.99927 * 235.40600 * 10 8 6 12 12 C 1.37872 * 119.99894 * 55.40393 * 10 8 6 13 13 N 1.31521 * 120.00339 * 2.06288 * 12 10 8 14 14 Si 1.86792 * 120.00069 * 182.06741 * 12 10 8 15 15 H 1.48508 * 109.47394 * 89.99889 * 14 12 10 16 16 H 1.48506 * 109.47469 * 210.00022 * 14 12 10 17 17 H 1.48500 * 109.47339 * 329.99504 * 14 12 10 18 18 C 1.50705 * 109.46697 * 180.02562 * 8 6 5 19 19 C 1.38231 * 120.00095 * 47.15838 * 18 8 6 20 20 C 1.38237 * 119.99772 * 179.97438 * 19 18 8 21 21 C 1.38239 * 119.99804 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00076 * 0.27452 * 21 20 19 23 23 C 1.38234 * 119.99306 * 227.13020 * 18 8 6 24 24 C 1.47156 * 118.02889 * 309.71436 * 5 4 2 25 25 C 1.52874 * 108.61044 * 50.23188 * 24 5 4 26 26 O 1.42958 * 109.51703 * 239.87420 * 2 1 3 27 27 H 1.08998 * 109.47381 * 299.86658 * 1 2 3 28 28 H 1.08996 * 109.47240 * 59.87634 * 1 2 3 29 29 H 1.09004 * 109.46955 * 179.87248 * 1 2 3 30 30 H 1.08995 * 109.47330 * 180.12705 * 3 2 1 31 31 H 1.08994 * 109.47069 * 300.12806 * 3 2 1 32 32 H 1.08997 * 109.47037 * 60.12478 * 3 2 1 33 33 H 1.09000 * 109.68477 * 52.51137 * 4 2 1 34 34 H 1.08999 * 109.71770 * 291.96514 * 4 2 1 35 35 H 0.97001 * 120.00627 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.00073 * 359.97307 * 19 18 8 37 37 H 1.07996 * 120.00087 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.99725 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.99927 * 179.72130 * 22 21 20 40 40 H 1.08000 * 120.00841 * 0.02562 * 23 18 8 41 41 H 1.09010 * 109.67502 * 170.00680 * 24 5 4 42 42 H 1.08999 * 109.68486 * 290.55740 * 24 5 4 43 43 H 1.08996 * 109.58237 * 187.92202 * 25 24 5 44 44 H 1.09004 * 109.37003 * 67.80825 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8760 1.1337 6 6 4.3194 -0.5032 2.1376 7 8 3.8555 -0.0357 3.1560 8 6 5.8105 -0.6681 1.9952 9 1 6.0464 -1.7210 1.8405 10 6 6.2942 0.1338 0.8145 11 1 6.8534 -0.3487 0.0267 12 6 6.0227 1.4835 0.7402 13 7 5.3769 2.0793 1.7188 14 14 6.5719 2.4659 -0.7506 15 1 5.5003 2.4465 -1.7785 16 1 6.8445 3.8686 -0.3461 17 1 7.8077 1.8638 -1.3124 18 6 6.4917 -0.1800 3.2478 19 6 6.0237 -0.5738 4.4874 20 6 6.6489 -0.1264 5.6363 21 6 7.7425 0.7144 5.5454 22 6 8.2073 1.1123 4.3058 23 6 7.5850 0.6611 3.1568 24 6 4.0410 -1.4404 -0.1136 25 6 3.4313 -0.6854 -1.2948 26 8 2.0076 -0.6763 -1.1654 27 1 -0.3634 0.5117 0.8911 28 1 -0.3633 0.5157 -0.8888 29 1 -0.3633 -1.0277 -0.0023 30 1 3.1320 1.4403 -0.0023 31 1 1.6775 1.9568 -0.8888 32 1 1.6812 1.9555 0.8911 33 1 1.5759 -1.7079 1.3208 34 1 1.8031 -0.1404 2.1380 35 1 5.1862 3.0289 1.6667 36 1 5.1696 -1.2309 4.5583 37 1 6.2831 -0.4336 6.6048 38 1 8.2307 1.0643 6.4430 39 1 9.0589 1.7727 4.2349 40 1 7.9507 0.9688 2.1883 41 1 5.1252 -1.3284 -0.1280 42 1 3.7796 -2.4964 -0.1821 43 1 3.7091 -1.1785 -2.2262 44 1 3.8029 0.3394 -1.2994 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433031609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:17 Heat of formation + Delta-G solvation = -61.107991 kcal Electronic energy + Delta-G solvation = -26914.435330 eV Core-core repulsion = 23410.403387 eV Total energy + Delta-G solvation = -3504.031942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.42455 -40.07887 -38.72684 -35.77045 -35.18133 -34.54471 -32.61069 -31.34527 -29.91900 -29.38706 -28.25982 -27.13286 -25.43463 -24.12085 -22.95966 -22.17647 -20.83986 -19.73327 -18.84474 -17.59753 -17.30737 -17.17613 -16.72396 -16.47377 -16.14346 -15.70039 -15.62080 -15.34868 -15.31989 -14.60278 -14.21257 -14.13299 -13.95116 -13.76389 -13.63796 -13.13911 -13.11451 -12.96077 -12.86044 -12.81232 -12.68681 -12.54894 -12.28853 -12.14409 -12.07894 -11.76724 -11.42418 -11.31409 -11.13437 -10.87566 -10.60743 -10.12321 -9.36952 -9.13285 -9.08614 -8.04843 -6.20720 0.88408 0.94146 1.37900 1.45533 1.49750 2.24299 2.38740 2.55008 2.83396 3.21704 3.33594 3.74824 3.91951 4.02411 4.21900 4.33120 4.35234 4.37031 4.41433 4.50739 4.57725 4.66136 4.69275 4.73866 4.76422 4.80092 4.87137 4.95067 5.00748 5.05184 5.07658 5.14670 5.17012 5.22218 5.37487 5.46263 5.55167 5.71043 5.88654 5.92899 5.96588 5.99896 6.27485 6.42829 6.53713 6.72890 6.95401 7.43550 7.87438 8.93424 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.006764 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.063677 B = 4138.719576 C = 5088.685756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.103 3.897 3 C -0.166 4.166 4 C 0.095 3.905 5 N -0.616 5.616 6 C 0.554 3.446 7 O -0.584 6.584 8 C 0.051 3.949 9 H 0.065 0.935 10 C -0.526 4.526 11 H 0.078 0.922 12 C 0.052 3.948 13 N -0.864 5.864 14 Si 0.920 3.080 15 H -0.276 1.276 16 H -0.299 1.299 17 H -0.259 1.259 18 C -0.036 4.036 19 C -0.118 4.118 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.083 4.083 24 C 0.072 3.928 25 C 0.048 3.952 26 O -0.381 6.381 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.253 0.747 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.126 0.874 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -5.270 -3.368 6.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 C -0.224 4.224 4 C -0.028 4.028 5 N -0.350 5.350 6 C 0.346 3.654 7 O -0.464 6.464 8 C 0.030 3.970 9 H 0.082 0.918 10 C -0.564 4.564 11 H 0.096 0.904 12 C -0.153 4.153 13 N -0.498 5.498 14 Si 0.746 3.254 15 H -0.202 1.202 16 H -0.226 1.226 17 H -0.183 1.183 18 C -0.037 4.037 19 C -0.137 4.137 20 C -0.165 4.165 21 C -0.159 4.159 22 C -0.170 4.170 23 C -0.101 4.101 24 C -0.050 4.050 25 C -0.029 4.029 26 O -0.300 6.300 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.144 0.856 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.509 -4.928 -2.885 6.702 hybrid contribution 0.335 1.304 -0.466 1.425 sum -3.175 -3.624 -3.351 5.869 Atomic orbital electron populations 1.21689 0.89794 1.03697 1.03306 1.21867 0.96224 0.90524 0.85104 1.22253 1.01899 0.96847 1.01388 1.22093 0.81758 1.00492 0.98481 1.47907 1.05407 1.64541 1.17122 1.21085 0.89777 0.73658 0.80914 1.90491 1.78211 1.46117 1.31566 1.17982 0.88248 0.97096 0.93652 0.91763 1.20746 1.37247 0.93104 1.05258 0.90418 1.25372 0.94673 0.98439 0.96838 1.70229 1.38135 1.10183 1.31255 0.86144 0.79503 0.78294 0.81426 1.20187 1.22565 1.18252 1.19942 0.94165 0.95455 0.94136 1.21020 0.98229 1.01180 0.93242 1.21171 0.97306 1.00065 0.97961 1.21163 0.97721 0.99374 0.97672 1.21313 1.01215 1.01452 0.93034 1.21114 0.95424 0.95415 0.98157 1.22574 1.02765 0.96701 0.83000 1.22921 0.80545 1.00092 0.99316 1.87879 1.21723 1.76854 1.43569 0.90314 0.90916 0.90582 0.93332 0.91855 0.92937 0.90686 0.91338 0.93734 0.88590 0.85486 0.84586 0.85664 0.86769 0.86251 0.90796 0.85600 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.85 71.98 0.64 -2.49 16 2 C 0.10 3.34 1.11 -10.69 -0.01 3.33 16 3 C -0.17 -6.13 8.10 71.98 0.58 -5.55 16 4 C 0.10 3.45 5.31 86.35 0.46 3.91 16 5 N -0.62 -24.78 2.55 -818.13 -2.08 -26.87 16 6 C 0.55 26.18 5.41 87.66 0.47 26.66 16 7 O -0.58 -31.58 13.42 -3.02 -0.04 -31.62 16 8 C 0.05 2.36 2.01 -13.03 -0.03 2.33 16 9 H 0.06 2.74 8.03 -2.39 -0.02 2.72 16 10 C -0.53 -24.00 4.80 25.60 0.12 -23.87 16 11 H 0.08 3.35 7.49 -2.91 -0.02 3.33 16 12 C 0.05 2.50 3.99 84.65 0.34 2.83 16 13 N -0.86 -45.94 10.89 21.45 0.23 -45.70 16 14 Si 0.92 38.97 29.54 68.60 2.03 41.00 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 18 C -0.04 -1.71 4.52 -19.87 -0.09 -1.79 16 19 C -0.12 -5.38 8.21 22.27 0.18 -5.19 16 20 C -0.15 -5.82 10.05 22.27 0.22 -5.59 16 21 C -0.14 -5.24 10.05 22.27 0.22 -5.01 16 22 C -0.15 -6.08 10.05 22.27 0.22 -5.85 16 23 C -0.08 -3.80 8.19 22.27 0.18 -3.61 16 24 C 0.07 2.45 6.13 86.21 0.53 2.97 16 25 C 0.05 1.55 6.58 71.94 0.47 2.02 16 26 O -0.38 -12.36 10.23 -148.98 -1.52 -13.89 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 2.13 6.11 -2.39 -0.01 2.12 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.07 2.80 7.08 -2.39 -0.02 2.79 16 35 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 36 H 0.10 4.44 7.01 -2.91 -0.02 4.42 16 37 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.11 5.41 6.02 -2.91 -0.02 5.39 16 41 H 0.12 4.27 4.38 -2.38 -0.01 4.26 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.04 1.39 6.25 -2.39 -0.01 1.38 16 Total: -1.00 -60.86 341.28 4.13 -56.73 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.99 Total: 35.28 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 4.52 Total: -14.93 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.85 Total: -72.57 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.56 Total: -45.51 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -60.86 4.13 -56.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433031609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.377 kcal (2) G-P(sol) polarization free energy of solvation -60.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds