Wall clock time and date at job start Tue Mar 31 2020 08:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.88596 * 2 1 4 4 C 1.54905 * 111.00481 * 123.88290 * 2 1 3 5 5 N 1.47429 * 104.83146 * 81.06022 * 4 2 1 6 6 C 1.34772 * 125.65110 * 204.08887 * 5 4 2 7 7 O 1.21282 * 119.99865 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00126 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.47575 * 300.00305 * 8 6 5 10 10 C 1.50705 * 109.47115 * 60.00278 * 8 6 5 11 11 H 1.07998 * 119.99887 * 235.36689 * 10 8 6 12 12 C 1.37871 * 119.99643 * 55.36799 * 10 8 6 13 13 N 1.31517 * 120.00482 * 1.97797 * 12 10 8 14 14 Si 1.86804 * 119.99842 * 181.97849 * 12 10 8 15 15 H 1.48505 * 109.46884 * 60.00235 * 14 12 10 16 16 H 1.48499 * 109.47496 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47273 * 300.00055 * 14 12 10 18 18 C 1.50696 * 109.47287 * 180.02562 * 8 6 5 19 19 C 1.38237 * 120.00584 * 226.91554 * 18 8 6 20 20 C 1.38226 * 120.00500 * 179.80707 * 19 18 8 21 21 C 1.38235 * 120.00074 * 0.40412 * 20 19 18 22 22 C 1.38236 * 120.00039 * 359.85231 * 21 20 19 23 23 C 1.38238 * 119.99907 * 359.95567 * 22 21 20 24 24 C 1.47023 * 108.69766 * 24.13340 * 5 4 2 25 25 C 1.54323 * 107.40738 * 358.85961 * 24 5 4 26 26 H 1.08997 * 110.71881 * 96.24815 * 25 24 5 27 27 O 1.42898 * 110.71689 * 219.52422 * 25 24 5 28 28 H 1.09003 * 109.47028 * 297.57661 * 1 2 3 29 29 H 1.09001 * 109.47032 * 57.56756 * 1 2 3 30 30 H 1.09001 * 109.47290 * 177.56899 * 1 2 3 31 31 H 1.09003 * 109.47056 * 182.42282 * 3 2 1 32 32 H 1.09000 * 109.47289 * 302.42822 * 3 2 1 33 33 H 1.09006 * 109.46808 * 62.43093 * 3 2 1 34 34 H 1.09004 * 110.36717 * 322.22983 * 4 2 1 35 35 H 1.08993 * 110.46171 * 199.94937 * 4 2 1 36 36 H 0.96997 * 120.00171 * 180.02562 * 13 12 10 37 37 H 1.08007 * 119.99630 * 0.02562 * 19 18 8 38 38 H 1.08005 * 120.00431 * 180.23145 * 20 19 18 39 39 H 1.08004 * 120.00617 * 179.83157 * 21 20 19 40 40 H 1.07995 * 120.00233 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00522 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.88216 * 118.35830 * 24 5 4 43 43 H 1.09003 * 109.87903 * 239.36009 * 24 5 4 44 44 H 0.96697 * 114.00116 * 298.53625 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0853 -0.8062 1.2005 5 7 2.0138 -2.2157 0.7740 6 6 1.9471 -3.2824 1.5950 7 8 1.9419 -3.1228 2.7973 8 6 1.8788 -4.6733 1.0192 9 1 0.9897 -4.7651 0.3954 10 6 3.1068 -4.9324 0.1849 11 1 3.0046 -5.2387 -0.8457 12 6 4.3606 -4.7784 0.7373 13 7 4.4849 -4.4432 2.0030 14 14 5.8828 -5.0457 -0.3119 15 1 5.8728 -4.0923 -1.4505 16 1 7.0977 -4.8197 0.5116 17 1 5.8880 -6.4369 -0.8312 18 6 1.8113 -5.6783 2.1401 19 6 2.6270 -6.7941 2.1182 20 6 2.5679 -7.7139 3.1483 21 6 1.6872 -7.5222 4.1964 22 6 0.8677 -6.4091 4.2158 23 6 0.9296 -5.4872 3.1876 24 6 2.0285 -2.2648 -0.6953 25 6 2.0842 -0.8093 -1.2054 26 1 3.1108 -0.5172 -1.4262 27 8 1.2515 -0.6443 -2.3549 28 1 -0.3633 0.4758 0.9109 29 1 -0.3633 0.5511 -0.8674 30 1 -0.3634 -1.0267 -0.0436 31 1 3.1643 1.4029 -0.0434 32 1 1.6902 1.9654 -0.8674 33 1 1.7606 1.9385 0.9110 34 1 1.4672 -0.6455 2.0839 35 1 3.1180 -0.5235 1.4044 36 1 5.3670 -4.3345 2.3915 37 1 3.3130 -6.9454 1.2978 38 1 3.2079 -8.5838 3.1330 39 1 1.6391 -8.2422 4.9999 40 1 0.1793 -6.2596 5.0344 41 1 0.2891 -4.6178 3.2024 42 1 2.9063 -2.8119 -1.0392 43 1 1.1231 -2.7507 -1.0590 44 1 1.5108 -1.1899 -3.1100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433963520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:01 Heat of formation + Delta-G solvation = -58.590114 kcal Electronic energy + Delta-G solvation = -26234.477224 eV Core-core repulsion = 22730.554465 eV Total energy + Delta-G solvation = -3503.922759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.75510 -38.43620 -36.97153 -35.15254 -33.70860 -32.80064 -30.82072 -29.66883 -28.09852 -27.66296 -27.17246 -25.63847 -23.83494 -22.29669 -21.26714 -20.36480 -18.93258 -18.43850 -17.00901 -16.82859 -15.72793 -15.40853 -15.32293 -14.85158 -14.47746 -14.20465 -13.80261 -13.67541 -13.40560 -13.12696 -12.87029 -12.61409 -12.33269 -12.27615 -12.08676 -11.97316 -11.77720 -11.55035 -11.47275 -11.23844 -10.98320 -10.88637 -10.81279 -10.62618 -10.47425 -10.06850 -10.04396 -9.83177 -9.67821 -9.38904 -8.71922 -8.31570 -7.68945 -7.58527 -7.39155 -6.15459 -4.30501 2.55269 2.62315 3.15729 3.23978 3.25663 3.89300 4.16298 4.31759 4.38160 4.65237 4.86799 5.02144 5.12369 5.15510 5.36356 5.54749 5.61485 5.77330 5.86605 5.89887 5.96230 6.00309 6.05935 6.07192 6.20350 6.24511 6.30885 6.36055 6.38903 6.49451 6.51662 6.60470 6.68753 6.77104 6.88654 7.14233 7.20730 7.33572 7.56131 7.64112 7.67058 7.75143 7.78813 8.17094 8.27030 8.58553 8.77349 9.33467 9.65091 10.85067 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.005995 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.543803 B = 4669.531403 C = 5798.995448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C -0.133 4.133 4 C 0.120 3.880 5 N -0.613 5.613 6 C 0.568 3.432 7 O -0.545 6.545 8 C 0.062 3.938 9 H 0.054 0.946 10 C -0.536 4.536 11 H 0.066 0.934 12 C 0.074 3.926 13 N -0.840 5.840 14 Si 0.884 3.116 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.015 4.015 19 C -0.065 4.065 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.100 4.100 24 C 0.086 3.914 25 C 0.095 3.905 26 H 0.068 0.932 27 O -0.557 6.557 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.266 0.734 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 5.189 -5.654 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.072 4.072 3 C -0.191 4.191 4 C -0.004 4.004 5 N -0.350 5.350 6 C 0.360 3.640 7 O -0.421 6.421 8 C 0.041 3.959 9 H 0.072 0.928 10 C -0.574 4.574 11 H 0.084 0.916 12 C -0.134 4.134 13 N -0.473 5.473 14 Si 0.712 3.288 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.016 4.016 19 C -0.082 4.082 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.119 4.119 24 C -0.038 4.038 25 C 0.036 3.964 26 H 0.086 0.914 27 O -0.362 6.362 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.145 0.855 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.799 5.649 -4.357 8.598 hybrid contribution 1.619 -0.460 -0.724 1.832 sum -3.180 5.188 -5.081 7.928 Atomic orbital electron populations 1.21500 0.93052 1.02248 1.00968 1.21833 0.96939 0.94778 0.93679 1.21710 1.00681 0.94759 1.01918 1.22077 0.99983 0.82186 0.96108 1.48049 1.76301 1.04850 1.05754 1.20827 0.72257 0.85601 0.85339 1.90548 1.50488 1.85870 1.15216 1.17829 0.97964 0.87315 0.92841 0.92765 1.20581 0.88972 1.50244 0.97569 0.91609 1.25050 0.99003 0.94596 0.94761 1.70057 1.23940 1.42459 1.10803 0.86770 0.82704 0.79007 0.80360 1.20135 1.21248 1.19892 1.19815 0.92610 0.94193 0.94974 1.21130 0.96674 0.92757 0.97681 1.20985 0.99855 0.99846 0.95908 1.20771 0.98612 0.98275 0.98604 1.20818 1.00750 0.95794 0.98844 1.20978 0.99292 0.97185 0.94412 1.22594 1.03011 0.95766 0.82477 1.23028 0.93066 0.94717 0.85621 0.91444 1.86476 1.57253 1.68586 1.23900 0.93200 0.92134 0.92387 0.92556 0.92147 0.92353 0.91023 0.92552 0.92407 0.85457 0.88049 0.88211 0.88101 0.87566 0.89647 0.91911 0.77604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.05 37.16 0.30 -1.35 16 2 C -0.07 -1.01 0.89 -152.23 -0.14 -1.15 16 3 C -0.13 -1.58 8.67 37.16 0.32 -1.25 16 4 C 0.12 2.13 5.84 -2.53 -0.01 2.12 16 5 N -0.61 -12.48 3.31 -170.52 -0.56 -13.04 16 6 C 0.57 13.65 5.52 -10.99 -0.06 13.59 16 7 O -0.55 -14.80 14.21 5.56 0.08 -14.72 16 8 C 0.06 1.45 2.32 -94.08 -0.22 1.23 16 9 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 10 C -0.54 -12.75 5.11 -34.44 -0.18 -12.93 16 11 H 0.07 1.51 7.81 -52.49 -0.41 1.10 16 12 C 0.07 1.84 4.01 -17.82 -0.07 1.76 16 13 N -0.84 -22.79 10.90 55.43 0.60 -22.19 16 14 Si 0.88 19.41 29.54 -169.99 -5.02 14.39 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 C -0.01 -0.36 4.51 -104.62 -0.47 -0.83 16 19 C -0.06 -1.51 8.21 -39.59 -0.32 -1.83 16 20 C -0.15 -3.11 10.05 -39.59 -0.40 -3.50 16 21 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 22 C -0.14 -2.99 10.05 -39.58 -0.40 -3.39 16 23 C -0.10 -2.31 8.21 -39.58 -0.33 -2.64 16 24 C 0.09 1.47 5.39 -3.06 -0.02 1.45 16 25 C 0.10 1.34 3.59 -24.76 -0.09 1.25 16 26 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 27 O -0.56 -6.90 12.30 -35.23 -0.43 -7.33 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.79 7.78 -51.93 -0.40 0.38 16 30 H 0.06 0.88 7.81 -51.93 -0.41 0.48 16 31 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.32 7.95 -51.93 -0.41 0.91 16 35 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.13 3.06 6.04 -52.48 -0.32 2.75 16 38 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.44 7.01 -52.49 -0.37 2.07 16 42 H 0.09 1.59 6.71 -51.93 -0.35 1.24 16 43 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 44 H 0.38 3.20 9.11 45.56 0.42 3.62 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -30.07 349.55 -8.56 -38.63 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.02 Total: 9.74 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.48 Total: -10.75 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.04 Total: -35.23 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.35 Total: -22.05 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.07 -8.56 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433963520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.959 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds