Wall clock time and date at job start Tue Mar 31 2020 08:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.88596 * 2 1 4 4 C 1.54905 * 111.00481 * 123.88290 * 2 1 3 5 5 N 1.47429 * 104.83146 * 81.06022 * 4 2 1 6 6 C 1.34772 * 125.65110 * 204.08887 * 5 4 2 7 7 O 1.21282 * 119.99865 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00126 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.47575 * 300.00305 * 8 6 5 10 10 C 1.50705 * 109.47115 * 60.00278 * 8 6 5 11 11 H 1.07998 * 119.99887 * 235.36689 * 10 8 6 12 12 C 1.37871 * 119.99643 * 55.36799 * 10 8 6 13 13 N 1.31517 * 120.00482 * 1.97797 * 12 10 8 14 14 Si 1.86804 * 119.99842 * 181.97849 * 12 10 8 15 15 H 1.48505 * 109.46884 * 60.00235 * 14 12 10 16 16 H 1.48499 * 109.47496 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47273 * 300.00055 * 14 12 10 18 18 C 1.50696 * 109.47287 * 180.02562 * 8 6 5 19 19 C 1.38237 * 120.00584 * 226.91554 * 18 8 6 20 20 C 1.38226 * 120.00500 * 179.80707 * 19 18 8 21 21 C 1.38235 * 120.00074 * 0.40412 * 20 19 18 22 22 C 1.38236 * 120.00039 * 359.85231 * 21 20 19 23 23 C 1.38238 * 119.99907 * 359.95567 * 22 21 20 24 24 C 1.47023 * 108.69766 * 24.13340 * 5 4 2 25 25 C 1.54323 * 107.40738 * 358.85961 * 24 5 4 26 26 H 1.08997 * 110.71881 * 96.24815 * 25 24 5 27 27 O 1.42898 * 110.71689 * 219.52422 * 25 24 5 28 28 H 1.09003 * 109.47028 * 297.57661 * 1 2 3 29 29 H 1.09001 * 109.47032 * 57.56756 * 1 2 3 30 30 H 1.09001 * 109.47290 * 177.56899 * 1 2 3 31 31 H 1.09003 * 109.47056 * 182.42282 * 3 2 1 32 32 H 1.09000 * 109.47289 * 302.42822 * 3 2 1 33 33 H 1.09006 * 109.46808 * 62.43093 * 3 2 1 34 34 H 1.09004 * 110.36717 * 322.22983 * 4 2 1 35 35 H 1.08993 * 110.46171 * 199.94937 * 4 2 1 36 36 H 0.96997 * 120.00171 * 180.02562 * 13 12 10 37 37 H 1.08007 * 119.99630 * 0.02562 * 19 18 8 38 38 H 1.08005 * 120.00431 * 180.23145 * 20 19 18 39 39 H 1.08004 * 120.00617 * 179.83157 * 21 20 19 40 40 H 1.07995 * 120.00233 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00522 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.88216 * 118.35830 * 24 5 4 43 43 H 1.09003 * 109.87903 * 239.36009 * 24 5 4 44 44 H 0.96697 * 114.00116 * 298.53625 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0853 -0.8062 1.2005 5 7 2.0138 -2.2157 0.7740 6 6 1.9471 -3.2824 1.5950 7 8 1.9419 -3.1228 2.7973 8 6 1.8788 -4.6733 1.0192 9 1 0.9897 -4.7651 0.3954 10 6 3.1068 -4.9324 0.1849 11 1 3.0046 -5.2387 -0.8457 12 6 4.3606 -4.7784 0.7373 13 7 4.4849 -4.4432 2.0030 14 14 5.8828 -5.0457 -0.3119 15 1 5.8728 -4.0923 -1.4505 16 1 7.0977 -4.8197 0.5116 17 1 5.8880 -6.4369 -0.8312 18 6 1.8113 -5.6783 2.1401 19 6 2.6270 -6.7941 2.1182 20 6 2.5679 -7.7139 3.1483 21 6 1.6872 -7.5222 4.1964 22 6 0.8677 -6.4091 4.2158 23 6 0.9296 -5.4872 3.1876 24 6 2.0285 -2.2648 -0.6953 25 6 2.0842 -0.8093 -1.2054 26 1 3.1108 -0.5172 -1.4262 27 8 1.2515 -0.6443 -2.3549 28 1 -0.3633 0.4758 0.9109 29 1 -0.3633 0.5511 -0.8674 30 1 -0.3634 -1.0267 -0.0436 31 1 3.1643 1.4029 -0.0434 32 1 1.6902 1.9654 -0.8674 33 1 1.7606 1.9385 0.9110 34 1 1.4672 -0.6455 2.0839 35 1 3.1180 -0.5235 1.4044 36 1 5.3670 -4.3345 2.3915 37 1 3.3130 -6.9454 1.2978 38 1 3.2079 -8.5838 3.1330 39 1 1.6391 -8.2422 4.9999 40 1 0.1793 -6.2596 5.0344 41 1 0.2891 -4.6178 3.2024 42 1 2.9063 -2.8119 -1.0392 43 1 1.1231 -2.7507 -1.0590 44 1 1.5108 -1.1899 -3.1100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433963520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:00 Heat of formation + Delta-G solvation = -77.298226 kcal Electronic energy + Delta-G solvation = -26235.288469 eV Core-core repulsion = 22730.554465 eV Total energy + Delta-G solvation = -3504.734004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25640 -40.01686 -38.61726 -36.34138 -35.56459 -34.21959 -32.63602 -31.37138 -29.49184 -29.32610 -28.22380 -27.17193 -25.59204 -23.67476 -22.97942 -22.03771 -20.29045 -20.00557 -18.63412 -18.10005 -17.34459 -17.11408 -16.90484 -16.57253 -16.08363 -15.52446 -15.36002 -15.21039 -14.95097 -14.49315 -14.28588 -14.06838 -13.92922 -13.76861 -13.67024 -13.34556 -13.14855 -13.00731 -12.88372 -12.73486 -12.68248 -12.57243 -12.27946 -12.00334 -11.85012 -11.80020 -11.44376 -11.22936 -11.19460 -10.96883 -10.62368 -10.17757 -9.40018 -9.24735 -9.11699 -8.06956 -6.25449 0.85806 0.91577 1.40965 1.44309 1.49953 2.24070 2.39334 2.54670 3.19342 3.26132 3.31805 3.46086 3.65414 4.00531 4.23396 4.30788 4.34181 4.34910 4.40513 4.48228 4.51820 4.66819 4.77222 4.77628 4.85675 4.91366 4.97364 5.02019 5.03045 5.05216 5.08605 5.14286 5.18630 5.34618 5.44101 5.46199 5.52384 5.68325 5.77076 5.88066 5.93927 5.96517 6.41081 6.51337 6.73418 6.90182 7.01465 7.40742 7.83650 8.92197 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.005995 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.543803 B = 4669.531403 C = 5798.995448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.617 5.617 6 C 0.563 3.437 7 O -0.586 6.586 8 C 0.055 3.945 9 H 0.059 0.941 10 C -0.525 4.525 11 H 0.073 0.927 12 C 0.039 3.961 13 N -0.876 5.876 14 Si 0.938 3.062 15 H -0.262 1.262 16 H -0.299 1.299 17 H -0.268 1.268 18 C -0.038 4.038 19 C -0.085 4.085 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.120 4.120 24 C 0.084 3.916 25 C 0.110 3.890 26 H 0.079 0.921 27 O -0.556 6.556 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.255 0.745 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 5.441 -6.769 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.185 4.185 4 C -0.007 4.007 5 N -0.352 5.352 6 C 0.355 3.645 7 O -0.466 6.466 8 C 0.034 3.966 9 H 0.076 0.924 10 C -0.562 4.562 11 H 0.091 0.909 12 C -0.165 4.165 13 N -0.510 5.510 14 Si 0.764 3.236 15 H -0.187 1.187 16 H -0.226 1.226 17 H -0.192 1.192 18 C -0.039 4.039 19 C -0.103 4.103 20 C -0.169 4.169 21 C -0.158 4.158 22 C -0.164 4.164 23 C -0.138 4.138 24 C -0.040 4.040 25 C 0.051 3.949 26 H 0.096 0.904 27 O -0.364 6.364 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.933 5.910 -5.554 9.493 hybrid contribution 1.576 -0.576 -0.391 1.723 sum -3.357 5.334 -5.946 8.664 Atomic orbital electron populations 1.21457 0.92595 1.01235 1.01948 1.21817 0.97202 0.95724 0.91735 1.21687 1.00875 0.92881 1.03099 1.22222 0.99502 0.81434 0.97578 1.48072 1.74735 1.05276 1.07092 1.20859 0.72010 0.86537 0.85097 1.90501 1.52612 1.86609 1.16912 1.17913 0.98070 0.87531 0.93126 0.92361 1.20738 0.89058 1.48820 0.97619 0.90927 1.25585 1.01290 0.94378 0.95279 1.70244 1.23436 1.44731 1.12577 0.85914 0.79241 0.79366 0.79115 1.18706 1.22590 1.19242 1.19951 0.93567 0.94678 0.95704 1.21110 0.96987 0.93672 0.98511 1.21326 1.00195 1.00052 0.95336 1.21185 0.97196 0.98418 0.98994 1.21185 1.01127 0.95366 0.98716 1.21026 0.99653 0.97729 0.95391 1.22726 1.02386 0.98297 0.80542 1.22811 0.93884 0.92066 0.86186 0.90357 1.86444 1.57009 1.68948 1.23961 0.92552 0.90749 0.94401 0.92217 0.90601 0.91512 0.92378 0.93434 0.93578 0.86904 0.85421 0.84295 0.85284 0.88696 0.91166 0.91576 0.75383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.05 71.98 0.58 -2.42 16 2 C -0.06 -1.73 0.89 -50.70 -0.05 -1.77 16 3 C -0.13 -2.71 8.67 71.98 0.62 -2.09 16 4 C 0.12 4.17 5.84 86.85 0.51 4.68 16 5 N -0.62 -25.69 3.31 -811.80 -2.69 -28.38 16 6 C 0.56 28.05 5.52 87.66 0.48 28.54 16 7 O -0.59 -33.30 14.21 -3.04 -0.04 -33.35 16 8 C 0.05 2.66 2.32 -13.03 -0.03 2.63 16 9 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 10 C -0.52 -25.30 5.11 25.60 0.13 -25.17 16 11 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 12 C 0.04 1.95 4.01 84.65 0.34 2.29 16 13 N -0.88 -48.85 10.90 21.45 0.23 -48.62 16 14 Si 0.94 39.93 29.54 68.60 2.03 41.95 16 15 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 C -0.04 -1.88 4.51 -19.86 -0.09 -1.97 16 19 C -0.08 -4.01 8.21 22.27 0.18 -3.83 16 20 C -0.15 -6.18 10.05 22.27 0.22 -5.95 16 21 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 22 C -0.15 -5.92 10.05 22.27 0.22 -5.69 16 23 C -0.12 -5.63 8.21 22.27 0.18 -5.45 16 24 C 0.08 2.85 5.39 86.73 0.47 3.32 16 25 C 0.11 2.90 3.59 31.87 0.11 3.02 16 26 H 0.08 1.94 8.02 -2.39 -0.02 1.92 16 27 O -0.56 -12.17 12.30 -148.98 -1.83 -14.00 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.74 7.78 -2.39 -0.02 1.72 16 30 H 0.04 1.12 7.81 -2.39 -0.02 1.10 16 31 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 2.22 7.95 -2.38 -0.02 2.20 16 35 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 36 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.11 5.55 6.04 -2.91 -0.02 5.53 16 38 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.09 4.56 7.01 -2.91 -0.02 4.54 16 42 H 0.07 2.60 6.71 -2.39 -0.02 2.58 16 43 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 44 H 0.40 5.52 9.11 -74.06 -0.67 4.85 16 Total: -1.00 -66.29 349.55 2.13 -64.15 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.32 Total: 33.16 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 4.12 Total: -14.92 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -2.45 Total: -77.00 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.88 Total: -47.35 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -66.29 2.13 -64.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433963520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.145 kcal (2) G-P(sol) polarization free energy of solvation -66.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds